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Directionally biased neuronal responses to pitch-axis vestibular stimulation in larval zebrafish compared to roll-axis responses

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Parsing Neurodynamic Information Streams to Estimate the Frequency, Magnitude and Duration of Team Uncertainty

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Linking brain and behavior states in Zebrafish Larvae locomotion using hidden Markov models

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Distinct distributed neural dynamics predict pallium-dependent social approach

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A thalamus–brainstem attractor network drives history-biased decisions

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Brain-Wide Impacts of Sedation on Spontaneous Activity and Auditory Processing in Larval Zebrafish

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Modulation of habenula axon terminals supports action-outcome associations in larval zebrafishPreprint

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Research status and trends of models integrating fish behavior and eco-hydraulic dynamics

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Ramp-to-threshold dynamics in a hindbrain population controls the timing of spontaneous saccades

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Aspiras, A. C., Harpaz, R., Chambule, S., Tseng, S.-M., Engert, F., Fishman, M. C., & Bahl, A. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.03.03.433803 · Cited by 2 · see citing works

Behavioral adaptation to changing energy constraints via altered frequency of movement selectionPreprint

Darveniza, T., Zhu, S., Pujic, Z., Sun, B., Levendosky, M., Wong, R., Agarwal, R., McCullough, M., & Goodhill, G. J. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.11.08.566262 · Cited by 2 · see citing works

Algorithmic dissection of optic flow memory in larval zebrafishPreprint

Tanaka, R., & Portugues, R. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.04.15.648832 · Cited by 2 · see citing works

Cardiac interoception impacts behavior and brain-wide neuronal dynamicsPreprint

Herrera, K. J., Zarghani-Shiraz, A., Ahrens, M. B., Engert, F., & Fishman, M. C. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.04.25.650721 · Cited by 2 · see citing works

Behavioral alignment as an organizing principle in sensory codingPreprint

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Molecular and functional dissection using CaMPARI-seq reveals the neuronal organization for dissociating optic flow-dependent behaviors

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Neural temporal scaling accounts for robust hunting behavior across temperatures

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Modulation of habenula axon terminals supports action-outcome associations in larval zebrafish

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How do we know how the brain works?—Analyzing whole brain activities with classic mathematical and machine learning methods

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Ramp-to-Threshold Dynamics in a Hindbrain Population Controls the Timing of Spontaneous SaccadesPreprint

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Investigating heading representation in the zebrafish interpeduncular nucleus (2024 FENS‐Kavli network of excellence PhD thesis prize)

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Distinct brain-wide neural dynamics predict social approach behaviorPreprint

Lifshitz, I., Livneh, N., Moshkovitz, M., Karmi, A., & Avitan, L. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.07.09.663340 · Cited by 1 · see citing works

Parallel and convergent pathways for multifeature visual processing in larval zebrafish sensorimotor decision-makingPreprint

Slangewal, K., Aimon, S., Capelle, M. Q., Kämpf, F., Naumann, H., Baier, H., Slanchev, K., & Bahl, A. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.08.12.669772 · Cited by 1 · see citing works

Astrocyte-induced internal state transitions reshape brainwide sensory, integrative, and motor computationsPreprint

Lim, J.-X., Wei, Z., Narayan, S., Zhang, Y., Hasseman, J. P., Kolb, I., Zheng, J., Sheikhattar, A., Mi, X., Zheng, W. H., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.02.05.704034 · Cited by 1 · see citing works

Developmental and genetic modulation of evidence integration dynamics in zebrafish sensorimotor decision-making

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Distributed representations of chemosensory valence in a naïve vertebrate brainPreprint

Jenkins, B., & Frank, T. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.06.17.732810 · Cited by 2 · see citing works

Opposing influences of sensory and response history in larval zebrafishPreprint

Mangalwedhekar, A., Hunt, S. A., Hachen, I., & Bahl, A. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.07.30.741669 · Cited by 1 · see citing works

A neural circuit basis for binasal input-enhanced chemosensory avoidancePreprint

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Mirror-assisted light-sheet microscopy: a simple upgrade to enable bi-directional sample excitation

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It’s about time: neural temporal scaling accounts for robust hunting behavior across temperaturesPreprint

Tamari, S. T., Rubinstein, Y., Livneh, N., Moshkovitz, M., Karmi, A., & Avitan, L. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.07.20.665717

Motor history influences behavioral strategy more than response outcome in Drosophila melanogasterPreprint

Bruzzone, M., Menti, G. M., Maschio, M. D., & Megighian, A. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.07.11.664321

Trans‐Synaptic Virus Tracing Reveals Reciprocal Connections of the Interpeduncular Nucleus With the Mood, Exteroceptive, Interoceptive, and Motor Control Systems

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An RNA ligase shapes transcriptional profiles, neural function, and behaviour in the developing larval zebrafishPreprint

Klusmann, F. S., Kögler, A. C., Slangewal, K., Önder, O., Naumann, H., Marx, A., Bahl, A., & Müller, P. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2025.12.01.691575

The hierarchical timescale hypothesis: Functional and structural convergence of biological networks and artificial neural nets

Lee, S. H., Nemenman, I. M., & Levchenko, A. (2026) · Cell Systems · doi:10.1016/j.cels.2025.101507

Control of wildtype zebrafish optomotor response with a photoswitchable drugPreprint

Camerin, L., Martínez‐Tambella, J., Schuhknecht, G. F. P., Wang, V. M., Krishnan, K., Pflitsch, P., Engert, F., & Gorostiza, P. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.03.05.709743

Light-seeking navigation in zebrafish larva : from behavior to neural circuits

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The neuronal basis of auditory-induced and spontaneous behavior in the zebrafish larva

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Latent factors capturing evolution of behavior in larval zebrafish

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Remote control of wildtype zebrafish optomotor response with a photoswitchable drug

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Innate sensorimotor policies constrain cerebellar adaptive correctionPreprint

Shenoy, A. K., & Portugues, R. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.10.01.754451

An atlas of functional ensembles in the zebrafish hindbrain links structural and molecular features to behaviorPreprint

Aimon, S., Naumann, H., & Bahl, A. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.09.30.752102

Perceptual decision making in larval zebrafish revealed by whole-brain imaging

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Neural circuits for evidence accumulation and decision making in larval zebrafish

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Signatures of motion processing and decisions in the larval zebrafish brain

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Brain-wide dynamics linking sensation to action during decision-making

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Neural Activity in Macaque Parietal Cortex Reflects Temporal Integration of Visual Motion Signals during Perceptual Decision Making

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