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DNA polymerase η is an A-T mutator in somatic hypermutation of immunoglobulin variable genes
Abstract
To determine whether DNA polymerase eta plays a role in the hypermutation of immunoglobulin variable genes, we examined the frequency and pattern of substitutions in variable VH6 genes from the peripheral blood lymphocytes of three patients with xeroderma pigmentosum variant disease, whose polymerase eta had genetic defects. The frequency of mutation was normal but the types of base changes were different: there was a decrease in mutations at A and T and a concomitant rise in mutations at G and C. We propose that more than one polymerase contributes to hypermutation and that if one is absent, others compensate. The data indicate that polymerase eta is involved in generating errors that occur predominantly at A and T and that another polymerase(s) may preferentially generate errors opposite G and C.
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“is characterized by a pattern of mutations that has been attributed to pol h (see the Discussion section for details) recruited for the repair of DNA damaged by AID during somatic hypermutation in immunoglobulin genes [28][29][30] .”
From DNA polymerase η mutational signatures are found in a variety of different types of cancer (2018) · cites this paper as [30]
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- Wood, R. D., Gearhart, P. J. & Neuberger, M. S. Hypermutation in antibody genes. Phil. Trans. R. Soc. Lond. B 356, 1–125 (2001).
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Class Switch Recombination: A Comparison Between Mouse and Human
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Smit, L. A., Bende, R. J., Aten, J., Guikema, J. E. J., Aarts, W. M., & van Noesel, C. J. M. (2003) · PubMed · Cited by 99
Martín, A., Li, Z., Lin, D. P., Bardwell, P. D., Iglesias-Ussel, M. D., Edelmann, W., & Scharff, M. D. (2003) · The Journal of Experimental Medicine · doi:10.1084/jem.20030880 · Cited by 98
“In fact, polymerase has been implicated as being the A-T mutator in SHM (42, 43).”
BackgroundHyper‐immunoglobulin M syndromes caused by intrinsic B‐lymphocyte defects
Durandy, A., Revy, P., Imai, K., et al. (2005) · Immunological Reviews · doi:10.1111/j.0105-2896.2005.00222.x · Cited by 97
“It probably requires the error-prone polymerases (Pol) Z and z (47, 48), because inactivation of Pol z in a human B-cell line diminishes SHM frequency (47, 49, 50), and SHMs exhibit an abnormal pattern in patients carrying mutations in Pol Z (Xeroderma pigmentosum variant) (48).”
BackgroundIncreased Susceptibility to UV-Induced Skin Carcinogenesis in Polymerase η–deficient Mice
Lin, Q., Clark, A. B., McCulloch, S. D., Yuan, T., Bronson, R. T., Kunkel, T. A., & Kucherlapati, R. (2006) · Cancer Research · doi:10.1158/0008-5472.can-05-1862 · Cited by 95
“This hypothesis has been supported by error specificity studies during copying of immunoglobulin gene-coding sequences in vitro (22) and by studies showing that mutations at A-T base pairs in immunoglobulin genes are underrepresented in XPV patients (23, 24 ).”
BackgroundResultInfluentialMutator phenotypes due to DNA replication infidelity
Arana, M. E., & Kunkel, T. A. (2010) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2010.10.003 · Cited by 103
Li, Z., Scherer, S. J., Ronai, D., et al. (2004) · The Journal of Experimental Medicine · doi:10.1084/jem.20040355 · Cited by 95
“Error-prone polymerases may also participate in the mutational process in both the V and switch regions (1), and a deficiency in polymerase � results in fewer mutations at A/T in the V region and in the switch regions ( 16 , 17, 56).”
BackgroundEPELDEGUI, M., HUNG, Y., MCQUAY, A., AMBINDER, R., & MARTINEZMAZA, O. (2007) · Molecular Immunology · doi:10.1016/j.molimm.2006.03.018 · Cited by 93
Gurrieri, C., McGuire, P. J., Zan, H., Yan, X., Cerutti, A., Albesiano, E., Allen, S. L., Vinciguerra, V. P., Rai, K. R., Ferrarini, M., et al. (2002) · The Journal of Experimental Medicine · doi:10.1084/jem.20011693 · Cited by 92
“636 Intraclonal Diversification in CLL B Cells downregulation of the translesion DNA pol , and the maintenance or upregulation of the translesion DNA pol (33), although studies in mice differ in this regard (60).”
BackgroundThe genetics of the hereditary xeroderma pigmentosum syndrome
Stary, A., & Sarasin, A. R. (2002) · Biochimie · doi:10.1016/s0300-9084(01)01358-x · Cited by 94
Delineation of the Role of the Mre11 Complex in Class Switch Recombination
Lähdesmäki, A., Taylor, A. M. R., Chrzańowska, K., & Pan‐Hammarström, Q. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m312796200 · Cited by 94
Xeroderma Pigmentosum-Variant Patients from America, Europe, and Asia
Inui, H., Oh, K., Nadem, C., Ueda, T., Khan, S. G., Metın, A., Gözükara, E. M., Emmert, S., Slor, H., Busch, D. B., et al. (2008) · Journal of Investigative Dermatology · doi:10.1038/jid.2008.48 · Cited by 92
Self-citationInhibition of mutagenic translesion synthesis: A possible strategy for improving chemotherapy?
Yamanaka, K., Chatterjee, N., Hemann, M. T., & Walker, G. C. (2017) · PLOS Genetics · doi:10.1371/journal.pgen.1006842 · Cited by 87
“• Generates A/T substitutions during somatic hypermutagenesis [34] • Protein expression ubiquitous in nucleus and cytoplasm of all tissues, with high expression in thyroid, lung, pancreas, placenta, testis, etc.”
BackgroundMutational fingerprints of aging
Dolle, M. E. T. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.2.545 · Cited by 87
“Recently, somatic hypermutation has been associated with DNA polymerase η as an A:T mutator (21,22), which could explain the relatively large fraction of mutations found at A:T base pairs in old spleen and lymphoma (Figs 1 and 2).”
BackgroundDurandy, A. (2003) · European Journal of Immunology · doi:10.1002/eji.200324133 · Cited by 87
Metadata
- Authors
- Zeng, X., Winter, D. B., Kasmer, C., Kraemer, K. H., Lehmann, A. R., & Gearhart, P. J.
- Affiliations
- National Institutes of Health (US)
- Walter Reed Army Institute of Research (US)
- University of Sussex (GB)
- Corresponding author
- Gearhart, Patricia J.
- Venue
- Nature Immunology
- Published
- 2001-06
- Volume
- 2
- Issue
- 6
- Pages
- 537-541
- ISSN
- 1529-2908 (ISSN-L)
- 1529-2916
- OpenAlex
- W1560486125
- Semantic Scholar
- 8a9d17ca74ddcb4e43d0ff02f4b768b9cb457829
- Cited by
- 420
- References
- 49
- Citations by year
- 2026: 1 · 2025: 4 · 2024: 6 · 2023: 6 · 2022: 7 · 2021: 11 · 2020: 12 · 2019: 12 · 2018: 10 · 2017: 10 · 2016: 11 · 2015: 8 · 2014: 12 · 2013: 15 · 2012: 15
- FWCI
- 13.73
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Immunology (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institutes of Health
- National Cancer Institute (Z01BC004517)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Immunology and Microbiology › Immunology › T-cell and B-cell Immunology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA regulation and disease
- Keywords
- DNA polymerase eta, somatic hypermutation, immunoglobulin variable region genes, xeroderma pigmentosum variant, peripheral blood lymphocytes, error-prone mutagenesis
- MeSH terms
- Y-Family DNA Polymerases, Animals, B-Lymphocytes, Base Sequence, DNA, DNA-Directed DNA Polymerase, Genes, Immunoglobulin, Humans, Immunoglobulin Variable Region, Molecular Sequence Data, Mutation, Xeroderma Pigmentosum, Base Pairing, Mice
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