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High-fat maternal diet during pregnancy persistently alters the offspring microbiome in a primate model
Open accessAbstract
The intestinal microbiome is a unique ecosystem and an essential mediator of metabolism and obesity in mammals. However, studies investigating the impact of the diet on the establishment of the gut microbiome early in life are generally lacking, and most notably so in primate models. Here we report that a high-fat maternal or postnatal diet, but not obesity per se, structures the offspring’s intestinal microbiome in Macaca fuscata (Japanese macaque). The resultant microbial dysbiosis is only partially corrected by a low-fat, control diet after weaning. Unexpectedly, early exposure to a high-fat diet diminished the abundance of non-pathogenic Campylobacter in the juvenile gut, suggesting a potential role for dietary fat in shaping commensal microbial communities in primates. Our data challenge the concept of an obesity-causing gut microbiome and rather provide evidence for a contribution of the maternal diet in establishing the microbiota, which in turn affects intestinal maintenance of metabolic health. The influence of diet on the establishment of gut microbiota early in life is poorly understood. Here the authors show, in a primate model, that maternal diet during pregnancy affects the offspring’s microbiome, and that dietary intervention after weaning only partially reverses this effect.
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Cites
QIIME allows analysis of high-throughput community sequencing data
Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Peña, A. G., Goodrich, J. K., Gordon, J. I., et al. (2010) · Nature Methods · doi:10.1038/nmeth.f.303 · Cited by 34,887
Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
Wang, Q., Garrity, G. M., Tiedje, J. M., & Cole, J. R. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.00062-07 · Cited by 19,885
Metagenomic biomarker discovery and explanation
Segata, N., Izard, J., Waldron, L., Gevers, D., Miropolsky, L., Garrett, W. S., & Huttenhower, C. (2011) · Genome Biology · doi:10.1186/gb-2011-12-6-r60 · Cited by 16,192
An obesity-associated gut microbiome with increased capacity for energy harvest
Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., Magrini, V., Mardis, E. R., & Gordon, J. I. (2006) · Nature · doi:10.1038/nature05414 · Cited by 12,444
Structure, function and diversity of the healthy human microbiome
The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11234 · Cited by 11,726
Diet rapidly and reproducibly alters the human gut microbiome
David, L. A., Maurice, C. F., Carmody, R. N., Gootenberg, D. B., Button, J. E., Wolfe, B. E., Ling, A. V., Devlin, A. S., Varma, Y., Fischbach, M. A., et al. (2014) · Nature · doi:10.1038/nature12820 · Cited by 10,100
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
Langille, M. G. I., Zaneveld, J., Caporaso, J. G., McDonald, D., Knights, D., Reyes, J. A., Clemente, J. C., Burkepile, D. E., Vega Thurber, R. L., Knight, R., et al. (2013) · Nature Biotechnology · doi:10.1038/nbt.2676 · Cited by 9,116
Human gut microbes associated with obesity
Ley, R. E., Turnbaugh, P. J., Klein, S., & Gordon, J. I. (2006) · Nature · doi:10.1038/4441022a · Cited by 8,785
A core gut microbiome in obese and lean twins
Turnbaugh, P. J., Hamady, M., Yatsunenko, T., Cantarel, B. L., Duncan, A., Ley, R. E., Sogin, M. L., Jones, W. J., Roe, B. A., Affourtit, J. P., et al. (2009) · Nature · doi:10.1038/nature07540 · Cited by 7,823
Human gut microbiome viewed across age and geography
Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G., Contreras, M., Magris, M., Hidalgo, G., Baldassano, R. N., Anokhin, A. P., et al. (2012) · Nature · doi:10.1038/nature11053 · Cited by 7,815
A metagenome-wide association study of gut microbiota in type 2 diabetes
Qin, J., Li, Y., Cai, Z., Li, S., Zhu, J., Zhang, F., Liang, S., Zhang, W., Guan, Y., Shen, D., et al. (2012) · Nature · doi:10.1038/nature11450 · Cited by 6,762
Linking long-term dietary patterns with gut microbial enterotypes
Wu, G. D., Chen, J., Hoffmann, C., Bittinger, K., Chen, Y.-Y., Keilbaugh, S. A., Bewtra, M., Knights, D., Walters, W. A., Knight, R., et al. (2011) · Science · doi:10.1126/science.1208344 · Cited by 6,513
Obesity alters gut microbial ecology
Ley, R. E., Bäckhed, F., Turnbaugh, P., Lozupone, C. A., Knight, R. D., & Gordon, J. I. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0504978102 · Cited by 6,176
Feature Selection with the Boruta Package
Kursa, M. B., & Rudnicki, W. R. (2010) · Journal of Statistical Software · doi:10.18637/jss.v036.i11 · Cited by 5,659
De Filippo, C., Cavalieri, D., Di Paola, M., Ramazzotti, M., Poullet, J. B., Massart, S., Collini, S., Pieraccini, G., & Lionetti, P. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1005963107 · Cited by 5,579
Dominguez-Bello, M. G., Costello, E. K., Contreras, M., Magris, M., Hidalgo, G., Fierer, N., & Knight, R. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1002601107 · Cited by 4,774
Richness of human gut microbiome correlates with metabolic markers
Le Chatelier, E., Nielsen, T., Qin, J., Prifti, E., Hildebrand, F., Falony, G., Almeida, M., Arumugam, M., Batto, J.-M., Kennedy, S., et al. (2013) · Nature · doi:10.1038/nature12506 · Cited by 4,662
Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice
Ridaura, V. K., Faith, J. J., Rey, F. E., Cheng, J., Duncan, A. E., Kau, A. L., Griffin, N. W., Lombard, V., Henrissat, B., Bain, J. R., et al. (2013) · Science · doi:10.1126/science.1241214 · Cited by 3,788
Evolution of mammals and their gut microbes
Ley, R. E., Hamady, M., Lozupone, C., Turnbaugh, P. J., Ramey, R. R., Bircher, J. S., Schlegel, M. L., Tucker, T. A., Schrenzel, M. D., Knight, R., et al. (2008) · Science · doi:10.1126/science.1155725 · Cited by 3,747
Turnbaugh, P. J., Bäckhed, F., Fulton, L., & Gordon, J. I. (2008) · Cell Host & Microbe · doi:10.1016/j.chom.2008.02.015 · Cited by 2,915
A framework for human microbiome research
The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11209 · Cited by 2,650
Mechanisms underlying the resistance to diet-induced obesity in germ-free mice
Bäckhed, F., Manchester, J. K., Semenkovich, C. F., & Gordon, J. I. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0605374104 · Cited by 2,615
Succession of microbial consortia in the developing infant gut microbiome
Koenig, J. E., Spor, A., Scalfone, N., Fricker, A. D., Stombaugh, J., Knight, R., Angenent, L. T., & Ley, R. E. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000081107 · Cited by 2,540
Reduced diversity of faecal microbiota in Crohn’s disease revealed by a metagenomic approach
Manichanh, C., Rigottier-Gois, L., Bonnaud, E., Gloux, K., Pelletier, E., Frangeul, L., Nalin, R., Jarrin, C., Chardon, P., Marteau, P., et al. (2006) · Gut · doi:10.1136/gut.2005.073817 · Cited by 2,277
Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy
Koren, O., Goodrich, J. K., Cullender, T. C., Spor, A., Laitinen, K., Kling Bäckhed, H., Gonzalez, A., Werner, J. J., Angenent, L. T., Knight, R., et al. (2012) · Cell · doi:10.1016/j.cell.2012.07.008 · Cited by 2,165
Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans
Muegge, B. D., Kuczynski, J., Knights, D., Clemente, J. C., González, A., Fontana, L., Henrissat, B., Knight, R., & Gordon, J. I. (2011) · Science · doi:10.1126/science.1198719 · Cited by 1,988
Nadkarni, M. A., Martin, F. E., Jacques, N. A., & Hunter, N. (2002) · Microbiology · doi:10.1099/00221287-148-1-257 · Cited by 1,938
Dietary intervention impact on gut microbial gene richness
Cotillard, A., Kennedy, S. P., Kong, L. C., Prifti, E., Pons, N., Le Chatelier, E., Almeida, M., Quinquis, B., Levenez, F., Galleron, N., et al. (2013) · Nature · doi:10.1038/nature12480 · Cited by 1,832
Removing Noise From Pyrosequenced Amplicons
Quince, C., Lanzen, A., Davenport, R. J., & Turnbaugh, P. J. (2011) · BMC Bioinformatics · doi:10.1186/1471-2105-12-38 · Cited by 1,592
UniFrac – An online tool for comparing microbial community diversity in a phylogenetic context
Lozupone, C., Hamady, M., & Knight, R. (2006) · BMC Bioinformatics · doi:10.1186/1471-2105-7-371 · Cited by 1,453
Gut microbiota of healthy Canadian infants: profiles by mode of delivery and infant diet at 4 months
Azad, M. B., Konya, T., Maughan, H., Guttman, D. S., Field, C. J., Chari, R. S., Sears, M. R., Becker, A. B., Scott, J. A., & Kozyrskyj, A. L. (2013) · Canadian Medical Association Journal · doi:10.1503/cmaj.121189 · Cited by 954
Ou, J., Carbonero, F., Zoetendal, E. G., DeLany, J. P., Wang, M., Newton, K., Gaskins, H. R., & O’Keefe, S. J. (2013) · The American Journal of Clinical Nutrition · doi:10.3945/ajcn.112.056689 · Cited by 646
Maternal high-fat diet triggers lipotoxicity in the fetal livers of nonhuman primates
McCurdy, C. E., Bishop, J. M., Williams, S. M., Grayson, B. E., Smith, M. S., Friedman, J. E., & Grove, K. L. (2009) · Journal of Clinical Investigation · doi:10.1172/jci32661 · Cited by 595
Self-citationGophna, U., Sommerfeld, K., Gophna, S., Doolittle, W. F., & Veldhuyzen van Zanten, S. J. O. (2006) · Journal of Clinical Microbiology · doi:10.1128/jcm.01004-06 · Cited by 550
Coadaptation of Helicobacter pylori and humans: ancient history, modern implications
Atherton, J. C., & Blaser, M. J. (2009) · Journal of Clinical Investigation · doi:10.1172/jci38605 · Cited by 549
Aagaard-Tillery, K. M., Grove, K., Bishop, J., Ke, X., Fu, Q., McKnight, R., & Lane, R. H. (2008) · Journal of Molecular Endocrinology · doi:10.1677/jme-08-0025 · Cited by 432
Self-citationAagaard, K., Petrosino, J., Keitel, W., Watson, M., Katancik, J., Garcia, N., Patel, S., Cutting, M., Madden, T., Hamilton, H., et al. (2013) · The FASEB Journal · doi:10.1096/fj.12-220806 · Cited by 383
Self-citationInverse Associations of Helicobacter pylori With Asthma and Allergy
Chen, Y. (2007) · Archives of Internal Medicine · doi:10.1001/archinte.167.8.821 · Cited by 374
Microbiota conservation and BMI signatures in adult monozygotic twins
Tims, S., Derom, C., Jonkers, D. M., Vlietinck, R., Saris, W. H., Kleerebezem, M., de Vos, W. M., & Zoetendal, E. G. (2013) · The ISME Journal · doi:10.1038/ismej.2012.146 · Cited by 367
Linton, D., Owen, R. J., & Stanley, J. (1996) · Research in Microbiology · doi:10.1016/s0923-2508(97)85118-2 · Cited by 363
Helicobacter pylori Colonization Is Inversely Associated with Childhood Asthma
Chen, Y., & Blaser, M. J. (2008) · The Journal of Infectious Diseases · doi:10.1086/590158 · Cited by 362
Molecular analysis of the diversity of vaginal microbiota associated with bacterial vaginosis
Ling, Z., Kong, J., Liu, F., Zhu, H., Chen, X., Wang, Y., Li, L., Nelson, K. E., Xia, Y., & Xiang, C. (2010) · BMC Genomics · doi:10.1186/1471-2164-11-488 · Cited by 345
Sullivan, E. L., Grayson, B., Takahashi, D., Robertson, N., Maier, A., Bethea, C. L., Smith, M. S., Coleman, K., & Grove, K. L. (2010) · The Journal of Neuroscience · doi:10.1523/jneurosci.5560-09.2010 · Cited by 322
Self-citationAlterations in the gut microbiome of children with severe ulcerative colitis
Michail, S., Durbin, M., Turner, D., Griffiths, A. M., Mack, D. R., Hyams, J., Leleiko, N., Kenche, H., Stolfi, A., & Wine, E. (2012) · Inflammatory Bowel Diseases · doi:10.1002/ibd.22860 · Cited by 284
Frias, A. E., Morgan, T. K., Evans, A. E., Rasanen, J., Oh, K. Y., Thornburg, K. L., & Grove, K. L. (2011) · Endocrinology · doi:10.1210/en.2010-1332 · Cited by 268
Self-citationOakley, B. B., Fiedler, T. L., Marrazzo, J. M., & Fredricks, D. N. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.02884-07 · Cited by 265
Association between Campylobacter Infection and Guillain‐Barré Syndrome
Allos, B. M. (1997) · The Journal of Infectious Diseases · doi:10.1086/513783 · Cited by 261
Suter, M. A., Chen, A., Burdine, M. S., Choudhury, M., Harris, R. A., Lane, R. H., Friedman, J. E., Grove, K. L., Tackett, A. J., & Aagaard, K. M. (2012) · The FASEB Journal · doi:10.1096/fj.12-212878 · Cited by 171
Self-citationMolecular inventory of faecal microflora in patients with Crohn's disease
Mangin, I., Bonnet, R., Seksik, P., Rigottier‐Gois, L., Sutren, M. ̈., Bouhnik, Y., Neut, C., Collins, M. D., Colombel, J., Marteau, P. R., et al. (2004) · FEMS Microbiology Ecology · doi:10.1016/j.femsec.2004.05.005 · Cited by 155
Suter, M., Bocock, P. N., Showalter, L., Hu, M., Shope, C. D., McKnight, R. A., Grove, K. L., Lane, R. H., & Aagaard-Tillery, K. M. (2010) · The FASEB Journal · doi:10.1096/fj.10-172080 · Cited by 137
Self-citationGrant, W. F., Gillingham, M. B., Batra, A. K., Fewkes, N. M., Comstock, S. M., Takahashi, D. L., Braun, T. P., Grove, K. L., Friedman, J. E., & Marks, D. L. (2011) · PLoS ONE · doi:10.1371/journal.pone.0017261 · Cited by 104
Self-citationMohammadi, T., Reesink, H. W., Vandenbroucke‐Grauls, C. M. J. E., & Savelkoul, P. H. M. (2003) · Journal of Clinical Microbiology · doi:10.1128/jcm.41.10.4796-4798.2003 · Cited by 102
Grech-Mora, I., Fardeau, M., Patel, B. K. C., Ollivier, B., Rimbault, A., Prensier, G., Garcia, J. L., & Garnier-Sillam, E. (1996) · International Journal of Systematic Bacteriology · doi:10.1099/00207713-46-2-512 · Cited by 92
Glucose and carbon dioxide metabolism by Succinivibrio dextrinosolvens
O'Herrin, S. M., & Kenealy, W. R. (1993) · Applied and Environmental Microbiology · doi:10.1128/aem.59.3.748-755.1993 · Cited by 91
Chaban, B. L., Musil, K. M., Himsworth, C. G., & Hill, J. E. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.00101-09 · Cited by 88
Is There Mother–Infant Bonding in Primates?
Maestripieri, D. (2001) · Developmental Review · doi:10.1006/drev.2000.0522 · Cited by 78
The Chronic Gastrointestinal Consequences Associated With Campylobacter
Riddle, M. S., Gutiérrez, R. L., Verdu, E. F., & Porter, C. K. (2012) · Current Gastroenterology Reports · doi:10.1007/s11894-012-0278-0 · Cited by 66
A maternal high-fat diet is accompanied by alterations in the fetal primate metabolome
Cox, J. E., Williams, S., Grove, K. L., Lane, R. H., & Aagaard-Tillery, K. M. (2009) · American Journal of Obstetrics and Gynecology · doi:10.1016/j.ajog.2009.06.041 · Cited by 65
Self-citationSuter, M., Sangi‐Haghpeykar, H., Showalter, L., Shope, C. D., Hu, M., Brown, K., Williams, S., Harris, R. A., Grove, K. L., Lane, R. H., et al. (2012) · Molecular Endocrinology · doi:10.1210/me.2012-1214 · Cited by 55
Self-citationDifferences between the normal vaginal bacterial community of baboons and that of humans
Rivera, A. J., Frank, J. A., Stumpf, R. M., Salyers, A. A., Wilson, B. A., Olsen, G. J., & Leigh, S. R. (2010) · American Journal of Primatology · doi:10.1002/ajp.20851 · Cited by 43
Bassaganya-Riera, J., Domínguez-Bello, M. G., Kronsteiner, B., Carbo, A., Lu, P., Viladomiu, M., Pedragosa, M., Zhang, X., Sobral, B., Mane, S. P., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0050069 · Cited by 39
Suter, M., Takahashi, D. L., Grove, K. L., & Aagaard, K. M. (2013) · Pediatric Research · doi:10.1038/pr.2013.106 · Cited by 35
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Metadata
- Authors
- Ma, J., Prince, A. L., Bader, D., Hu, M., Ganu, R., Baquero, K., Blundell, P., Alan Harris, R., Frias, A. E., Grove, K. L., & Aagaard, K. M.
- Venue
- Nature Communications
- Published
- 2014-05-20
- Volume
- 5
- Issue
- 1
- Pages
- 3889-3889
- ISSN
- 2041-1723 (ISSN-L)
- OpenAlex
- W2081313422
- Cited by
- 438
- References
- 62
- FWCI
- 13.51
- Type
- journal article
- Language
- en
- Open access
- bronze
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