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Segmental duplications and the evolution of the primate genome

Samonte, Rhea Vallente, Eichler, Evan E.·2002·Nature Reviews Genetics

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Research works printed but not linked: 54

  1. Ohno, S. Evolution by Gene Duplication (Springer, New York, 1970). · DOI · Paper page
  2. White, T. D. J. Modes of Speciation (W. H. Freeman, San Francisco, California, 1973).
  3. O'Brien, S. J. & Stanyon, R. Phylogenomics. Ancestral primate viewed. Nature 402, 365–366 (1999). · DOI
  4. Lundin, L. Evolution of the vertebrate genome as reflected in paralogous chromosomal regions in man and the house mouse. Genomics 16, 1–19 (1993). · DOI · Paper page
  5. The International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature 409, 860–921 (2001). · DOI · Paper page
  6. Cheung, V. G. et al. Integration of cytogenetic landmarks into the draft sequence of the human genome. The BAC Resource Consortium. Nature 409, 953–958 (2001). · DOI · Paper page
  7. Bailey, J. A., Yavor, A. M., Massa, H. F., Trask, B. J. & Eichler, E. E. Segmental duplications: organization and impact within the current human genome project assembly. Genome Res. 11, 1005–1017 (2001). · DOI
  8. Eichler, E. E. Recent duplication, domain accretion and the dynamic mutation of the human genome. Trends Genet. 17, 661–669 (2001). · DOI · Paper page
  9. Eichler, E. E. et al. Duplication of a gene-rich cluster between 16p11.1 and Xq28: a novel pericentromeric-directed mechanism for paralogous genome evolution. Hum. Mol. Genet. 5, 899–912 (1996). · DOI
  10. Horvath, J., Schwartz, S. & Eichler, E. The mosaic structure of a 2p11 pericentromeric segment: a strategy for characterizing complex regions of the human genome. Genome Res. 10, 839–852 (2000). · DOI
  11. Tilford, C. A. et al. A physical map of the human Y chromosome. Nature 409, 943–945 (2001). · DOI · Paper page
  12. Dombroski, B. A., Mathias, S. L., Nanthakumar, E., Scott, A. F. & Kazazian, H. H. Jr. Isolation of an active human transposable element. Science 254, 1805–1808 (1991). · DOI · Paper page
  13. Moran, J. V., DeBerardinis, R. J. & Kazazian, H. H. Jr. Exon shuffling by L1 retrotransposition. Science 283, 1530–1534 (1999). · DOI · Paper page
  14. Hattori, M. et al. The DNA sequence of human chromosome 21. The chromosome 21 mapping and sequencing consortium. Nature 405, 311–319 (2000). · DOI · Paper page
  15. Adams, M. D. et al. The genome sequence of Drosophila melanogaster. Science 287, 2185–2195 (2000). · DOI · Paper page
  16. Copenhaver, G. P. et al. Genetic definition and sequence analysis of Arabidopsis centromeres. Science 286, 2468–2474 (1999). · DOI · Paper page
  17. Eichler, E., Archidiacono, N. & Rocchi, M. CAGGG repeats and the pericentromeric duplication of the hominoid genome. Genome Res. 9, 1048–1058 (1999). · DOI
  18. Guy, J. et al. Genomic sequence and transcriptional profile of the boundary between pericentromeric satellites and genes on human chromosome arm 10q. Hum. Mol. Genet. 9, 2029–2042 (2000). · DOI
  19. Davis, M., Kim, S. & Hood, L. DNA sequences mediating class switching in α-immunoglobulins. Science 209, 1360–1365 (1980). · DOI · Paper page
  20. Sen, D. & Gilbert, W. Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications in meiosis. Nature 334, 364–366 (1988). · DOI · Paper page
  21. Horvath, J. et al. Molecular structure and evolution of an α/non-α satellite junction at 16p11. Hum. Mol. Genet. 9, 113–123 (2000). · DOI
  22. Jackson, M. S. et al. Sequences flanking the centromere of human chromosome 10 are a complex patchwork of arm-specific sequences, stable duplications, and unstable sequences with homologies to telomeric and other centromeric locations. Hum. Mol. Genet. 8, 205–215 (1999). · DOI
  23. Bailey, J. A. et al. Human specific duplication and mosaic transcripts: the recent paralogous structure of chromosome 22. Am. J. Hum. Genet. 70 (in the press). · DOI · Paper page
  24. Keller, M. P., Seifried, B. A. & Chance, P. F. Molecular evolution of the CMT1A-REP region: a human- and chimpanzee-specific repeat. Mol. Biol. Evol. 16, 1019–1026 (1999). · doi:10.1093/oxfordjournals.molbev.a026191
  25. Courseaux, A. & Nahon, J. L. Birth of two chimeric genes in the Hominidae lineage. Science 291, 1293–1297 (2001). · DOI
  26. Lupski, J. R. Genomic disorders: structural features of the genome can lead to DNA rearrangements and human disease traits. Trends Genet. 14, 417–422 (1998). · DOI · Paper page
  27. Emanuel, B. S. & Shaikh, T. H. Segmental duplications: an 'expanding' role in genomic instability and disease. Nature Rev. Genet. 2, 791–800 (2001). · DOI · Paper page
  28. Kuroda-Kawaguchi, T. et al. The AZFc region of the Y chromosome features massive palindromes and uniform recurrent deletions in infertile men. Nature Genet. 29, 279–286 (2001). · DOI · Paper page
  29. Yunis, J. J. & Prakash, O. The origin of man: a chromosomal pictorial legacy. Science 215, 1525–1530 (1982). · DOI · Paper page
  30. Turleau, C., De Grouchy, J. & Klein, M. Chromosomal phylogeny of man and the anthropomorphic primates (Pan troglodytes, Gorilla gorilla, Pongo pygmaeus). Attempt at reconstitution of the karyotype of the common ancestor. Ann. Genet. 15, 225–240 (1972).
  31. Dutrillaux, B. Chromosomal evolution in primates: tentative phylogeny from Microcebus murinus (Prosimian) to man. Hum. Genet. 48, 251–314 (1979). · DOI · Paper page
  32. Nickerson, E. & Nelson, D. L. Molecular definition of pericentric inversion breakpoints occurring during the evolution of humans and chimpanzees. Genomics 50, 368–372 (1998). · DOI
  33. Valero, M. C., De Luis, O., Cruces, J. & Perez Jurado, L. A. Fine-scale comparative mapping of the human 7q11.23 region and the orthologous region on mouse chromosome 5G: the low-copy repeats that flank the Williams–Beuren syndrome deletion arose at breakpoint sites of an evolutionary inversion(s). Genomics 69, 1–13 (2000). · DOI
  34. Dehal, P. et al. Human chromosome 19 and related regions in mouse: conservative and lineage specific evolution. Science 293, 104–111 (2001). · DOI · Paper page
  35. Stankiewicz, P., Park, S. S., Inoue, K. & Lupski, J. R. The evolutionary chromosome translocation 4;19 in Gorilla gorilla is associated with microduplication of the chromosome fragment syntenic to sequences surrounding the human proximal CMT1A-REP. Genome Res. 11, 1205–1210 (2001). · DOI
  36. Tunnacliffe, A. et al. Duplicated KOX zinc finger gene clusters flank the centromere of human chromosome 10: evidence for a pericentric inversion during primate evolution. Nucleic Acids Res. 21, 1409–1417 (1993). · DOI
  37. Maresco, D. L., Chang, E., Theil, K. S., Francke, U. & Anderson, C. L. The three genes of the human FCGR1 gene family encoding FcγRI flank the centromere of chromosome 1 at 1p12 and 1q21. Cytogenet. Cell Genet. 73, 157–163 (1996). · doi:10.1159/000134330
  38. Iyer, G. et al. Identification of a testis-expressed creatine transporter gene at 16p11.2 and confirmation of the X-linked locus to Xq28. Genomics 34, 143–146 (1996). · DOI
  39. Walsh, J. B. How often do duplicated genes evolve new functions? Genetics 139, 421–428 (1995). · DOI · Paper page
  40. Patthy, L. Genome evolution and the evolution of exon-shuffling — a review. Gene 238, 103–114 (1999). · DOI · Paper page
  41. Nei, M., Zhang, J. & Yokoyama, S. Color vision of ancestral organisms of higher primates. Mol. Biol. Evol. 14, 611–618 (1997). · DOI
  42. Yokoyama, S., Starmer, W. T. & Yokoyama, R. Paralogous origin of the red- and green-sensitive visual pigment genes in vertebrates. Mol. Biol. Evol. 10, 527–538 (1993).
  43. Rosenberg, H. F. & Dyer, K. D. Eosinophil cationic protein and eosinophil-derived neurotoxin. Evolution of novel function in a primate ribonuclease gene family. J. Biol. Chem. 270, 21539–21544 (1995). · DOI
  44. O'Neill, R. J., O'Neill, M. J. & Graves, J. A. Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid. Nature 393, 68–72 (1998). · DOI · Paper page
  45. Petrov, D. A., Schutzman, J. L., Hartl, D. L. & Lozovskaya, E. R. Diverse transposable elements are mobilized in hybrid dysgenesis in Drosophila virilis. Proc. Natl Acad. Sci. USA 92, 8050–8054 (1995). · DOI · Paper page
  46. Archidiacono, N. et al. Evolution of chromosome Y in primates. Chromosoma 107, 241–246 (1998). · DOI
  47. Johnson, M. E. et al. Positive selection of a gene family during the emergence of humans and African apes. Nature 413, 514–519 (2001). · DOI · Paper page
  48. Zhang, J., Rosenberg, H. F. & Nei, M. Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proc. Natl Acad. Sci. USA 95, 3708–3713 (1998). · DOI · Paper page
  49. Duda, T. F. & Palumbi, S. R. Molecular genetics of ecological diversification: duplication and rapid evolution of toxin genes of the venomous gastropod Conus. Proc. Natl Acad. Sci. USA 96, 6820–6823 (1999). · DOI · Paper page
  50. Civetta, A. & Singh, R. S. Sex-related genes, directional sexual selection, and speciation. Mol. Biol. Evol. 15, 901–909 (1998). · DOI · Paper page
  51. Hutter, H. et al. Conservation and novelty in the evolution of cell adhesion and extracellular matrix genes. Science 287, 989–994 (2000). · DOI · Paper page
  52. McClelland, M. et al. Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three Salmonella enterica serovars, typhimurium, typhi and paratyphi. Nucleic Acids Res. 28, 4974–4986 (2000). · DOI
  53. Wilson, A. C., Bush, G. L., Case, S. M. & King, M. C. Social structuring of mammalian populations and rate of chromosomal evolution. Proc. Natl Acad. Sci. USA 72, 5061–5065 (1975). · DOI · Paper page
  54. McConkey, E. H. & Varki, A. A primate genome project deserves high priority. Science 289, 1295–1296 (2000). · DOI

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Metadata

Authors
Samonte, R. V., & Eichler, E. E.
Venue
Nature Reviews Genetics
Published
2002-01
Volume
3
Issue
1
Pages
65-72
ISSN
  • 1471-0056 (ISSN-L)
  • 1471-0064
OpenAlex
W1551836412
Cited by
420
References
4
FWCI
4.15
Type
journal article
Language
en
Open access
closed
Licence
www.springer.com/tdm (tdm)

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Samonte, R. V., & Eichler, E. E. (2002). Segmental duplications and the evolution of the primate genome. Nature Reviews Genetics. https://doi.org/10.1038/nrg705

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