Cited by 63Cytokine Signaling Pathways and InteractionsProtein Tyrosine PhosphatasesGenomics and Chromatin Dynamics

Selective STAT3-α or -β expression reveals spliceform-specific phosphorylation kinetics, nuclear retention and distinct gene expression outcomes

Open access
Ng, Ivan H. W., Ng, Dominic C. H., Jans, David A., Bogoyevitch, Marie A.·2012·Biochemical Journal

Abstract

Phosphorylation of STAT3 (signal transducer and activator of transcription 3) is critical for its nuclear import and transcriptional activity. Although a shorter STAT3β spliceform was initially described as a negative regulator of STAT3α, gene knockout studies have revealed that both forms play critical roles. We have expressed STAT3α and STAT3β at comparable levels to facilitate a direct comparison of their functional effects, and have shown their different cytokine-stimulated kinetics of phosphorylation and nuclear translocation. Notably, the sustained nuclear translocation and phosphorylation of STAT3β following cytokine exposure contrasted with a transient nuclear translocation and phosphorylation of STAT3α. Importantly, co-expression of the spliceforms revealed that STAT3β enhanced and prolonged the phosphorylation and nuclear retention of STAT3α, but a STAT3β R609L mutant, with a disrupted SH2 (Src homology 2) domain, was not tyrosine phosphorylated following cytokine stimulation and could not cross-regulate STAT3α. The physiological importance of prolonged phosphorylation and nuclear retention was indicated by transcriptome profiling of STAT3−/− cells expressing either STAT3α or STAT3β, revealing the complexity of genes that are up- and down-regulated by the STAT3 spliceforms, including a distinct set of STAT3β-specific genes regulated under basal conditions and after cytokine stimulation. These results highlight STAT3β as a significant transcriptional regulator in its own right, with additional actions to cross-regulate STAT3α phosphorylation and nuclear retention after cytokine stimulation.

AI snapshot

Written from the paper’s full text.

TL;DR

STAT3α and STAT3β expressed at comparable levels show distinct cytokine-stimulated phosphorylation and nuclear retention kinetics, with STAT3β being more sustained. STAT3β also cross-regulates STAT3α phosphorylation/nuclear retention via a functional SH2 domain and drives distinct transcriptional programs under basal and cytokine-stimulated conditions.

Key findings

  • After OSM stimulation, STAT3β showed prolonged nuclear retention and Tyr705 phosphorylation, whereas STAT3α was more transient; STAT3β also had higher basal nuclear retention and basal Tyr705 phosphorylation.
  • Co-expression of STAT3β enhanced and prolonged STAT3α Tyr705 phosphorylation, but the STAT3β R609L SH2-domain mutant was not tyrosine phosphorylated after OSM and could not cross-regulate STAT3α.
  • Transcriptome profiling in Stat3−/− MEFs re-expressing either spliceform showed basal gene changes unique to STAT3α (651 genes), unique to STAT3β (1331 genes), and shared (506 genes); STAT3β uniquely up-regulated 1141 genes versus 125 for STAT3α and 307 shared.
  • After 3 h OSM, iSTAT3β MEFs had 501 gene changes versus 256 in iSTAT3α MEFs, with 432 unique to STAT3β and 187 unique to STAT3α; 78 genes were up-regulated in iSTAT3β versus 16 in iSTAT3α.

Methods

  • FLAG-tagged STAT3α/β and Y705F or R609L mutants were expressed via lentiviral 4-HT-inducible system in Stat3−/− MEFs (iSTAT3α/iSTAT3β), with additional transient transfections in AD293/COS1 cells; cells were stimulated with OSM (10 ng/ml) and analyzed by immunoblotting, co-immunoprecipitation, immunofluorescence/CLSM, and subcellular fractionation.
  • Microarray analysis used Affymetrix GeneChip mouse gene 1.0 ST arrays with n=3 biological replicates, RMA/quantile normalization, LIMMA, Benjamini–Hochberg adjusted P<0.05, and LOGFC ≥1 or ≤−1; selected changes were validated by TaqMan qRT-PCR and genes were classified by DAVID/CateGOrizer GO analysis.
  • Statistical comparisons used GraphPad Prism 5 with unpaired Student’s t test, P<0.05 considered significant.

Limitations

  • The paper notes that its use of FLAG-tagged STAT3 constructs and lentivirus-based inducible expression, rather than endogenous STAT3 levels, may explain differences from prior Stat3β−/− studies; cellular context may also be critical.
  • Cross-regulation experiments involved STAT3β overexpression to higher levels than usually observed in WT cells, and some mechanistic data (TC45 interaction/knockdown, Myc-tagged STAT3α) are described as unpublished.
  • The text states that negative regulation of STAT3 is more complex than anticipated and further work is needed to define the tyrosine phosphatases targeting the spliceforms; it also notes that additional undescribed STAT3 regulators may exist within the examined gene lists.

Model-written summary. Check it against the paper before relying on it.

Integrity signals

Registry

Crossref · 10.1042/bj20120941

Cites

57 of 57 references verified0 citation errors · 0 not checkable

Statistics

Nothing to recompute.

Claims the paper makes

21 of 46 cited sources checked · 14 supported · 3 flagged · accuracy not yet measured

  • Premisecitation

    The combined knockdown of TC45 in combination with the cytoplasmic tyrosine phosphatases SHP1 and SHP2 has been shown to be insufficient in prolonging STAT3 phosphorylation.

    “the combined knockdown of TC45 in combination with the cytoplasmic tyrosine phosphatases SHP1 (SH2 domain-containing protein tyrosine phosphatase 1) [35,36] and SHP2 [37,38] has also been shown more recently to be insufficient in prolonging STAT3 phosphorylation [39].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [39] Kim, 2010, Protein tyrosine phosphatases, TC-PTP, SHP1, and SHP2, cooperate in rapid dephosphorylation of Stat3 in keratinocytes following UVB irradiation, PLoS ONE source

      The Results section (Figure 6; page unavailable) reports that combined knockdown of TC-PTP, SHP1, and SHP2 increased phosphorylated Stat3 and reduced its dephosphorylation after UVB irradiation—the opposite of saying the knockdown was insufficient to prolong phosphorylation. The Discussion notes that some dephosphorylation still occurred, but does not say the knockdown had no effect. (LLM, conf=0.88)

      Checked by a reasoning model — may be wrong.

      Experimental — accuracy not yet measured
  • Findingown data

    GO analyses revealed large numbers of STAT3β-regulated genes involved in metabolism, protein metabolism, transport, cell organization and biogenesis under basal conditions.

    “GO analyses using the online tools DAVID Bioinformatics [24,25] and CateGOrizer [26] revealed large numbers of STAT3β-regulated genes involved in metabolism, protein metabolism (including transcription and translation), transport, cell organization and biogenesis (Table 2).”
    Quote in the paperSubstantial claim1 of 3 sources checked
    • cites [24] Huang da, 2009, Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources, Nat. Protoc. source
    • cites [25] Huang da, 2009, Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists, Nucleic Acids Res. source
    • cites [26] Hu, 2008, CateGOrizer: a web-based program to batch analyze gene ontology classification categories, Online J. Bioinform.

      Not checked in the free run.

  • Interpretationcitation

    The effects of the loss of STAT3β on STAT3α regulation are further supported by a study in liver showing that adenoviral delivery of STAT3β, followed by cytokine stimulation with IL-6, potentiates phosphorylation of STAT3α.

    “These observations indicate that the effects of the loss of STAT3β on STAT3α regulation are further supported by a study in liver showing that the adenoviral delivery of STAT3β, followed by cytokine stimulation with IL-6, potentiates phosphorylation of STAT3α [40].”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [40] Ramadoss, 2009, STAT3 targets the regulatory regions of gluconeogenic genes in vivo, Mol. Endocrinol. source

      The ‘STAT3 is required in vivo for repression of G6Pase by IL-6’ section reports adenoviral STAT3β overexpression in mouse liver, increased basal phosphorylated STAT3, and IL-6-induced phosphorylation in both control and STAT3β-overexpressing livers. It does not say that STAT3β potentiated IL-6-induced phosphorylation or identify the phosphorylated protein as STAT3α. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
  • Findingown data

    For STAT3β re-expression under basal conditions, the number of genes up-regulated (1141) is 6-fold greater than the number down-regulated (190).

    “Thus, for STAT3β re-expression, the number of genes up-regulated (1141 genes in iSTAT3β only) was 6-fold greater than the numbers down-regulated (190 genes in iSTAT3β only).”
    Quote in the paperSubstantial claim
  • Findingown data

    187 gene changes were unique to iSTAT3α MEFs after OSM stimulation.

    “when compared with iSTAT3α MEFs (187 unique changes)”
    Quote in the paperSubstantial claim
  • Classified as probably not a substantial claim. 15
  • May combine two claims. 32
  • The quote only partly states this claim. 2
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Initial support for STAT3β acting as a dominant-negative regulator came with the repression and/or down-regulation of a number of recognized STAT3α target genes when STAT3β was overexpressed.

    “Initial support for this came with the repression and/or down-regulation of a number of recognized STAT3α target genes when STAT3β was overexpressed [10,48].”
    Quote in the paperNot a substantial claim1 of 2 sources checked
    • cites [10] Caldenhoven, 1996, STAT3β, a splice variant of transcription factor STAT3, is a dominant negative regulator of transcription, J. Biol. Chem. source
    • cites [48] Schaefer, 1995, Cooperative transcriptional activity of Jun and Stat3β, a short form of Stat3, Proc. Natl. Acad. Sci. U.S.A. source

      The Results report that overexpressed STAT3β stimulated the α2-macroglobulin–TK promoter; STAT3α, not STAT3β, slightly repressed reporter expression. The Discussion likewise describes STAT3β as activating this promoter, rather than acting as a dominant-negative regulator. Our copy does not report down-regulation of multiple STAT3α target genes by STAT3β. (LLM, conf=0.85)

      Checked by a reasoning model — may be wrong.

      Experimental — accuracy not yet measured
  • May combine two claims.

    Interpretationcitation

    Direct side-by-side comparisons of STAT3α phosphorylation in Stat3β−/−, Stat3β+/− or Stat3β+/+ cells were not presented in those studies, and the loss of STAT3 DNA binding or STAT3 reporter gene activity appeared to be greater than could be anticipated based solely on the ratios of STAT3α/STAT3β in WT cells.

    “However, direct side-by-side comparisons of STAT3α phosphorylation in Stat3β−/−, Stat3β+/− or Stat3β+/+ cells were not presented in those studies and the loss of STAT3 DNA binding or STAT3 reporter gene activity appeared to be greater than could be anticipated based solely on the ratios of STAT3α/STAT3β in WT cells [16].”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [16] Yoo, 2002, Specific ablation of Stat3β distorts the pattern of Stat3-responsive gene expression and impairs recovery from endotoxic shock, Cell source

      Split into 2 atoms — 1 confirmed, 0 partially supported, 1 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

      Checked by a reasoning model — may be wrong.

      Experimental — accuracy not yet measured
  • Classified as probably not a substantial claim. May combine two claims.

    Premisecitation

    In vivo studies indicate a requirement for STAT3β during endotoxic assault, a requirement for STAT3α in IL-8 synthesis, and differential roles for STAT3α and STAT3β in anti-inflammatory responses.

    “spliceform-specific functions have been indicated by various in vivo studies showing a requirement for STAT3β during endotoxic assault [16], but a requirement for STAT3α in IL-8 synthesis [17], as well as differential roles for STAT3α and STAT3β in anti-inflammatory responses [15].”
    Quote in the paperSubstantial claim2 of 3 sources checked
    • cites [16] Yoo, 2002, Specific ablation of Stat3β distorts the pattern of Stat3-responsive gene expression and impairs recovery from endotoxic shock, Cell source
    • cites [17] Yeh, 2004, Oxidized phospholipids increase interleukin 8 (IL-8) synthesis by activation of the c-src/signal transducers and activators of transcription (STAT)3 pathway, J. Biol. Chem. source

      The Abstract and Discussion report that STAT3 participates in Ox-PAPC-induced IL-8 synthesis in human endothelial cells; the Discussion says a dominant-negative STAT3β construct inhibited that response. The paper does not directly establish a specific requirement for STAT3α, and the reported experiment was in cultured cells, not in vivo. The other clauses of the citing sentence have separate citations and are not attributed to this source. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
    • cites [15] Maritano, 2004, The STAT3 isoforms α and β have unique and specific functions, Nat. Immunol. source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    STAT3-dependent up-regulation of microRNAs (such as miR-21 and miR-181b-1) mediates repression of gene expression.

    “such as those requiring STAT3-dependent up-regulation of microRNAs (such as miR-21 and miR-181b-1 [56]) that mediate repression of gene expression.”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [56] Iliopoulos, 2010, STAT3 activation of miR-21 and miR-181b-1 via PTEN and CYLD are part of the epigenetic switch linking inflammation to cancer, Mol. Cell source
  • May combine two claims.

    Interpretationcitation

    These results are consistent with the association of STAT3 with both active and inactive promoters in embryonic stem cells and the reported actions of STAT3 to down-regulate expression of specific target genes, such as Necdin.

    “These results are consistent with the association of STAT3 with both active and inactive promoters in embryonic stem cells [54] and the reported actions of STAT3 to down-regulate expression of specific target genes, such as that recently described for the negative growth regulator Necdin [55].”
    Quote in the paperNot a substantial claim2 of 2 sources checked
    • cites [54] Kidder, 2008, Stat3 and c-Myc genome-wide promoter occupancy in embryonic stem cells, PLoS ONE source
    • cites [55] Haviland, 2011, Necdin, a negative growth regulator, is a novel STAT3 target gene down-regulated in human cancer, PLoS ONE source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    STAT3-dependent repression of genes has been shown to be critical for muscle cell differentiation.

    “Similarly, the STAT3-dependent repression of genes has been shown to be critical for muscle cell differentiation [53].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [53] Snyder, 2008, Identification of novel direct Stat3 target genes for control of growth and differentiation, J. Biol. Chem. source
  • Classified as probably not a substantial claim.

    Premisecitation

    Basal STAT3 has been shown to have transcriptional activity under basal conditions.

    “and that basal STAT3 has been shown to have transcriptional activity under basal conditions [44,45]”
    Quote in the paperSubstantial claim2 of 2 sources checked
    • cites [44] Yang, 2005, Novel roles of unphosphorylated STAT3 in oncogenesis and transcriptional regulation, Cancer Res. source
    • cites [45] Yang, 2007, Unphosphorylated STAT3 accumulates in response to IL-6 and activates transcription by binding to NFκB, Genes Dev. source

      The section “RANTES expression is induced cooperatively by p65 and U-STAT3” reports transcriptional activity from unphosphorylated STAT3, including increased RANTES promoter activity. However, the experiments used overexpression of STAT3; they do not establish that STAT3 at basal levels has this activity under basal conditions. Page numbers are unavailable in our copy. (LLM, conf=0.84)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Others have concluded that there were no noticeable changes in STAT3α regulation in the absence of STAT3β (i.e. in Stat3β−/− MEFs) following cytokine stimulation.

    “Indeed, others have also concluded that there were no noticeable changes in STAT3α regulation in the absence of STAT3β (i.e. in Stat3β−/− MEFs) following cytokine stimulation [16].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [16] Yoo, 2002, Specific ablation of Stat3β distorts the pattern of Stat3-responsive gene expression and impairs recovery from endotoxic shock, Cell source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Interpretationcitation

    The prolonged nuclear retention of STAT3β observed in this study is consistent with an earlier report of nuclear retention of STAT3β following cell exposure to IL-6.

    “This is consistent with an earlier report of nuclear retention of STAT3β following cell exposure to IL-6 [32].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [32] Huang, 2007, Stat3 isoforms, α and β, demonstrate distinct intracellular dynamics with prolonged nuclear retention of Stat3β mapping to its unique C-terminal end, J. Biol. Chem. source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Striking changes in the levels of STAT3α and STAT3β have been noted during myeloid differentiation.

    “Given the striking changes in the levels of STAT3α and STAT3β noted during myeloid differentiation [12–14]”
    Quote in the paperNot a substantial claim1 of 3 sources checked
    • cites [12] Biethahn, 1999, Expression of granulocyte colony-stimulating factor- and granulocyte-macrophage colony-stimulating factor-associated signal transduction proteins of the JAK/STAT pathway in normal granulopoiesis and in blast cells of acute myelogenous leukemia, Exp. Hematol. source
    • cites [13] Dewilde, 2008, Of alphas and betas: distinct and overlapping functions of STAT3 isoforms, Front. Biosci. source
    • cites [14] Hevehan, 2002, Differential expression and phosphorylation of distinct STAT3 proteins during granulocytic differentiation, Blood source
  • May combine two claims.

    Premisecitation

    Previously, the R609L mutation that disrupts the SH2 domain function of STAT3 has only been made in the context of STAT3α, but its expression in cells with endogenous STAT3α levels precluded its detailed characterization of phosphorylation and nuclear translocation kinetics.

    “Previously, the R609L mutation that disrupts the SH2 domain function of STAT3 has only been made in the context of STAT3α, but its expression in cells with endogenous STAT3α levels precluded its detailed characterization of phosphorylation and nuclear translocation kinetics [29].”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [29] Zhang, 2000, The coiled-coil domain of Stat3 is essential for its SH2 domain-mediated receptor binding and subsequent activation induced by epidermal growth factor and interleukin-6, Mol. Cell. Biol. source

      Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    STAT3 has been demonstrated to activate or repress its direct target genes in NIH 3T3 cells, with OSM treatment increasing six of 18 direct target genes specifically tested, but decreasing expression of ten of these 18 direct target genes.

    “Notably, STAT3 has been demonstrated to activate or repress its direct target genes in NIH 3T3 cells, with OSM treatment increasing six of 18 direct target genes specifically tested, but decreasing expression of ten of these 18 direct target genes [53].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [53] Snyder, 2008, Identification of novel direct Stat3 target genes for control of growth and differentiation, J. Biol. Chem. source
  • Classified as probably not a substantial claim. May combine two claims.

    Premisecitation

    Dimerization between STAT3 proteins is a prerequisite for nuclear translocation upon activation and occurs via its functional SH2 domain.

    “Dimerization between STAT3 proteins has been a prerequisite for nuclear translocation upon activation and this interaction occurs via its functional SH2 domain [28,29].”
    Quote in the paperSubstantial claim1 of 2 sources checked
    • cites [28] Shuai, 1994, Interferon activation of the transcription factor Stat91 involves dimerization through SH2-phosphotyrosyl peptide interactions, Cell source
    • cites [29] Zhang, 2000, The coiled-coil domain of Stat3 is essential for its SH2 domain-mediated receptor binding and subsequent activation induced by epidermal growth factor and interleukin-6, Mol. Cell. Biol. source
  • Classified as probably not a substantial claim.

    Premisecitation

    There has been increasing evidence of basal nucleocytoplasmic shuttling of STAT3.

    “As there has been increasing evidence of basal nucleocytoplasmic shuttling of STAT3 [6,41–43]”
    Quote in the paperSubstantial claim2 of 4 sources checked
    • cites [6] Liu, 2005, STAT3 nuclear import is independent of tyrosine phosphorylation and mediated by importin-α3, Proc. Natl. Acad. Sci. U.S.A. source
    • cites [41] Herrmann, 2007, Nucleocytoplasmic shuttling of persistently activated STAT3, J. Cell Sci. source
    • cites [42] Pranada, 2004, Real time analysis of STAT3 nucleocytoplasmic shuttling, J. Biol. Chem. source
    • cites [43] Vogt, 2011, The role of the N-terminal domain in dimerization and nucleocytoplasmic shuttling of latent STAT3, J. Cell Sci. source
  • May combine two claims.

    Findingown data

    Under basal non-cytokine-stimulated conditions, phospho-STAT3 levels in iSTAT3α MEFs are significantly lower than in WT MEFs, whereas nuclear phospho-STAT3 levels in iSTAT3β MEFs are significantly higher.

    “under basal non-cytokine-stimulated conditions, the levels of phospho-STAT3 detected in iSTAT3α MEFs were significantly lower than in WT MEFs, whereas the levels of nuclear phospho-STAT3 in iSTAT3β MEFs were significantly higher.”
    Quote in the paperSubstantial claim
  • May combine two claims. The quote only partly states this claim.

    Findingown data

    STAT3β regulates 39 genes classified in the GO term of developmental processes after OSM stimulation, while no genes in this GO category are altered in iSTAT3α MEFs.

    “Further consideration of the GO lists showed the dominance of STAT3β to regulate genes classified in the GO term of developmental processes, with 39 genes (Supplementary Table S5 at http://www.BiochemJ.org/bj/447/bj4470125add.htm) altered in expression in iSTAT3β MEFs, but no genes in this GO category altered in iSTAT3α MEFs.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    In transiently transfected AD293 cells, FLAG-STAT3β shows a comparable increase in nuclear localization after 15 min of OSM treatment, but remains predominantly nuclear at 60 min whereas FLAG-STAT3α is cytoplasmic at 60 min.

    “A comparable increase in nuclear localization of FLAG–STAT3β was observed following 15 min of OSM treatment, but strikingly FLAG–STAT3α showed cytoplasmic localization following 60 min of OSM treatment, whereas FLAG–STAT3β remained predominantly nuclear”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Following cytokine stimulation, STAT3β shows sustained nuclear translocation and phosphorylation, whereas STAT3α shows transient nuclear translocation and phosphorylation.

    “Notably, the sustained nuclear translocation and phosphorylation of STAT3β following cytokine exposure contrasted with a transient nuclear translocation and phosphorylation of STAT3α.”
    • Also stated in: § Enhanced Tyr705 phosphorylation and nuclear retention of STAT3β following cytokine stimulation · plain
      “showed the dominance of nuclear STAT3 following 15 min of OSM treatment, with an ensuing rapid loss of FLAG–STAT3α from the nucleus but nuclear retention of FLAG–STAT3β by 60 min of OSM treatment”
    • Also stated in: § Enhanced Tyr705 phosphorylation and nuclear retention of STAT3β following cytokine stimulation · plain
      “nuclear levels of phospho-STAT3 were highest at 15 min post-activation with OSM in all cases in WT, iSTAT3α and iSTAT3β MEFs, and declined rapidly in the case of iSTAT3α MEFs.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    In WT MEFs, nuclear phospho-STAT3 is intense at 15 min of OSM stimulation and remains detectable at 60 min.

    “noting the intense nuclear phospho-STAT3 detected at 15 min of OSM stimulation, but the continued detection of nuclear phospho-STAT3 following 60 min of OSM stimulation”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Some GO terms showed changes in iSTAT3α and iSTAT3β MEFs only, such as transport, cell organization and biogenesis or cell proliferation; conversely, some GO terms were restricted to iSTAT3α MEFs, such as cell cycle.

    “Furthermore, some GO terms showed changes in iSTAT3α and iSTAT3β MEFs only, such as transport (Supplementary Table S3), cell organization and biogenesis (Supplementary Table S7 at http://www.BiochemJ.org/bj/447/bj4470125add.htm) or cell proliferation (Supplementary Table S8 at http://www.BiochemJ.org/bj/447/bj4470125add.htm). Conversely, some GO terms were restricted to iSTAT3α MEFs, such as cell”
    Quote in the paperSubstantial claim
  • The quote only partly states this claim.

    Findingown data

    In the GO term cell adhesion, three genes (Thbs1, Fbln2 and Cyr61) were regulated exclusively in the iSTAT3β MEFs after OSM stimulation.

    “Similarly, in the GO term cell adhesion, three genes (Thbs1, Fbln2 and Cyr61) were regulated exclusively in the iSTAT3β MEFs.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    In transiently transfected AD293 cells, FLAG-STAT3α is largely cytosolic under basal conditions but predominantly nuclear following 15 min of OSM stimulation.

    “FLAG–STAT3α was largely cytosolic under basal conditions, but predominantly nuclear following 15 min of OSM stimulation”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    An additional 37 genes were regulated by STAT3α re-expression and OSM stimulation, and an additional 17 were regulated by STAT3β re-expression and OSM stimulation.

    “an additional 37 were regulated by STAT3α re-expression and OSM stimulation and an additional 17 were regulated by STAT3β re-expression and OSM stimulation.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    STAT3β re-expression under basal conditions results in 394 metabolism, 161 protein metabolism, 124 transport, and 113 cell organization and biogenesis STAT3β-specific gene changes.

    “we noted prominent representation of several GO classes: metabolism (394 STAT3β-specific changes), protein metabolism (161 STAT3β-specific changes), transport (124 STAT3β-specific changes) as well as cell organization and biogenesis (113 STAT3β-specific changes).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    STAT3β re-expression was sufficient to change the expression for genes for the GO class of cell death, but no genes in this class were uniquely regulated by STAT3α.

    “Furthermore, STAT3β re-expression was sufficient to change the expression for genes for the GO class of cell death, but our statistical analyses showed that no genes in this class were uniquely regulated by STAT3α.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Profiling the transcriptional consequences of re-expression of STAT3α or STAT3β in Stat3−/− MEFs revealed the range of gene expression changes shared by these STAT3 isoforms, but also large sets of STAT3β-specific differences under basal conditions.

    “In profiling the transcriptional consequences of re-expression of STAT3α or STAT3β in Stat3−/− MEFs, our analysis revealed the range of gene expression changes shared by these STAT3 isoforms, but also large sets of STAT3β-specific differences under basal conditions.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    A functional SH2 domain of STAT3β is required for cross-regulation of STAT3α phosphorylation, consistent with the effects of STAT3β on STAT3α being dependent on STAT3 dimerization and/or phosphorylation.

    “The results indicate the requirement for a functional SH2 domain of STAT3β in the cross-regulation of phosphorylation of STAT3α, consistent with the effects of STAT3β on STAT3α being dependent on STAT3 dimerization and/or phosphorylation.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    There is both functional overlap as well as unique roles for the two different STAT3 spliceforms.

    “Thus there is both functional overlap as well as unique roles for these two different STAT3 spliceforms.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Study design and conductown data

    STAT3α and STAT3β were expressed at comparable levels in the iSTAT3α and iSTAT3β MEF lines, allowing direct comparison of their functional effects without confounding by different expression levels.

    “We have expressed STAT3α and STAT3β at comparable levels to facilitate a direct comparison of their functional effects”
    • Also stated in: § Enhanced Tyr705 phosphorylation and nuclear retention of STAT3β following cytokine stimulation · plain
      “Our expression of each STAT3 spliceform was at a comparable level, thus allowing our direct comparison of their functional effects and biochemical actions attributable to their different C-terminal sequences without confounding effects of different levels of expression.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Phosphorylation of STAT3 Ser727 by serine/threonine kinases such as MAPKs enhances STAT3 transcriptional activity.

    “whereas the phosphorylation of Ser727 by serine/threonine kinases such as the MAPKs (mitogen-activated protein kinases) enhances STAT3 transcriptional activity [5,6].”
    Quote in the paperNot a substantial claim0 of 2 sources checked
    • cites [5] Levy, 2002, What does Stat3 do?, J. Clin. Invest. source
    • cites [6] Liu, 2005, STAT3 nuclear import is independent of tyrosine phosphorylation and mediated by importin-α3, Proc. Natl. Acad. Sci. U.S.A. source
  • May combine two claims.

    Premisecitation

    STAT3β spliceform expression rescues STAT3−/− embryonic lethality, highlighting key STAT3β-specific roles in development.

    “A previous study demonstrating rescue of STAT3−/− embryonic lethality with STAT3β spliceform expression (i.e. in the absence of STAT3α) highlight key STAT3β-specific roles in development [15].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [15] Maritano, 2004, The STAT3 isoforms α and β have unique and specific functions, Nat. Immunol. source
  • May combine two claims.

    Interpretationown data

    The effects of STAT3β on transcription in response to cytokine exposure are not restricted to transcriptional repression, and the effects of STAT3α are not dominated by increased gene expression under these conditions.

    “These results clearly illustrate that the effects of STAT3β on transcription in response to cytokine exposure are not restricted to transcriptional repression, and conversely that the effects of STAT3α are not dominated by increased gene expression under these conditions of analysis.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Oligonucleotide-mediated enforced switching to preferential splicing of STAT3β has emphasized the anti-tumorigenic activity of STAT3β.

    “a recent advance with an oligonucleotide-mediated enforced switching to preferential splicing of STAT3β (rather than STAT3α) has emphasized the anti-tumorigenic activity of STAT3β [18].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [18] Zammarchi, 2011, Antitumorigenic potential of STAT3 alternative splicing modulation, Proc. Natl. Acad. Sci. U.S.A. source
  • Classified as probably not a substantial claim.

    Premisecitation

    Activation of STAT3 requires phosphorylation of Tyr705 and Ser727.

    “This activation of STAT3 requires the phosphorylation of Tyr705 and Ser727.”
    Quote in the paperSubstantial claim0 of 2 sources checked
    • cites [5] Levy, 2002, What does Stat3 do?, J. Clin. Invest. source
    • cites [6] Liu, 2005, STAT3 nuclear import is independent of tyrosine phosphorylation and mediated by importin-α3, Proc. Natl. Acad. Sci. U.S.A. source
  • May combine two claims.

    Premisecitation

    STAT3α and STAT3β arise from alternative splicing; STAT3α is 92 kDa and 770 amino acids, whereas STAT3β is 84 kDa and identical except that 55 C-terminal amino acids are replaced by a unique seven-amino-acid sequence.

    “Two distinct STAT3 isoforms originating from alternative splicing have been described. STAT3α (92 kDa) is 770 amino acids in length, whereas STAT3β (84 kDa) is identical in sequence with the exception of 55 amino acids at the C-terminal tail that are replaced with a unique seven-amino-acid sequence (Figure 1A) [10,11].”
    Quote in the paperSubstantial claim0 of 2 sources checked
    • cites [10] Caldenhoven, 1996, STAT3β, a splice variant of transcription factor STAT3, is a dominant negative regulator of transcription, J. Biol. Chem. source
    • cites [11] Shao, 2001, Identification and characterization of cis elements in the STAT3 gene regulating STAT3 α and STAT3 β messenger RNA splicing, Blood source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Phosphorylation of STAT3 Tyr705 by JAKs is critical for STAT3 dimerization and subsequent cytokine-stimulated nuclear translocation.

    “the phosphorylation of STAT3 Tyr705 by JAKs (Janus kinases) is critical for STAT3 dimerization and subsequent cytokine-stimulated nuclear translocation”
    Quote in the paperNot a substantial claim0 of 2 sources checked
    • cites [5] Levy, 2002, What does Stat3 do?, J. Clin. Invest. source
    • cites [6] Liu, 2005, STAT3 nuclear import is independent of tyrosine phosphorylation and mediated by importin-α3, Proc. Natl. Acad. Sci. U.S.A. source
  • May combine two claims.

    Interpretationown data

    No known STAT3α regulators were identified in the genes significantly altered in expression by STAT3β, suggesting that the action of STAT3β to cross-regulate STAT3α is not dependent on longer-term transcriptional events.

    “Importantly, in the context of understanding cross-regulation mechanisms, no known STAT3α regulators were identified in the genes significantly altered in expression by STAT3β, thus suggesting that the action of STAT3β to cross-regulate STAT3α is not dependent on longer-term transcriptional events.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    The regulation of STAT3α by STAT3β appears to require a functional STAT3β SH2 domain and/or the tyrosine phosphorylation of STAT3β.

    “Thus the regulation of STAT3α by STAT3β appears to require a functional STAT3β SH2 domain and/or the tyrosine phosphorylation of STAT3β.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    STAT3 transcriptional activity has been attributed to its transactivation domain that binds transcription co-activators such as p300.

    “STAT3 transcriptional activity has been attributed to its transactivation domain that binds transcription co-activators such as p300 [46].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [46] Schuringa, 2001, Ser727-dependent transcriptional activation by association of p300 with STAT3 upon IL-6 stimulation, FEBS Lett. source
  • May combine two claims.

    Interpretationreasoning

    These functions of STAT3β indicate its importance as a modulator of gene expression in its own right, and highlight the possibility that an additional important action of STAT3β may be in extending the activation kinetics for STAT3α.

    “These functions of STAT3β indicate its importance as a modulator of gene expression in its own right, but also now highlight the exciting possibility that an additional important action of STAT3β may be in extending the activation kinetics for STAT3α.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    The present study reinforces the transcriptional functions of STAT3β under basal conditions as well as its direct actions to modulate STAT3α activation following cytokine stimulation.

    “In conclusion, the present study reinforces the transcriptional functions of STAT3β under basal conditions as well as its direct actions to modulate STAT3α activation following cytokine stimulation.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationreasoning

    Both STAT3α and STAT3β are transcriptional regulators following cytokine stimulation, and STAT3β should not simply be viewed as a repressor or negative regulator of gene transcription.

    “Thus both STAT3α and STAT3β are transcriptional regulators following cytokine stimulation, and STAT3β should not simply be viewed as a repressor or negative regulator of gene transcription.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    STAT3β is a potent transcriptional regulator with sustained nuclear retention and is also able to cross-regulate/enhance the transcriptional activity of STAT3α.

    “Taken together, our results highlight that STAT3β is a potent transcriptional regulator with sustained nuclear retention and is also able to cross-regulate/enhance the transcriptional activity of STAT3α.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Premisecitation

    STAT3β has been shown to initiate transcription of the p27Kip1 gene in myeloblastic cells, α1-anti-chymotrypsin and α2-macroglobulin in hepatocytes, and acute-phase genes in the liver during inflammation, and so can act as an up-regulator of transcription of specific gene sets.

    “Furthermore, STAT3β has been shown to initiate transcription of the p27Kip1 gene in myeloblastic cells [51], α1-anti-chymotrypsin and α2-macroglobulin in hepatocytes [52], acute-phase genes in the liver during inflammation [15], and so can act as an up-regulator of transcription of specific gene sets.”
    Quote in the paperNot a substantial claim0 of 3 sources checked
    • cites [51] de Koning, 2000, STAT3-mediated differentiation and survival and of myeloid cells in response to granulocyte colony-stimulating factor: role for the cyclin-dependent kinase inhibitor p27Kip1, Oncogene source
    • cites [52] Sasse, 1997, Mutational analysis of acute-phase response factor/Stat3 activation and dimerization, Mol. Cell. Biol. source
    • cites [15] Maritano, 2004, The STAT3 isoforms α and β have unique and specific functions, Nat. Immunol. source
  • May combine two claims.

    Interpretationown data

    The differences in gene expression profiles in the presence of the different STAT3 spliceforms, but also following cell exposure to cytokine, highlight further the remarkable spliceform-dependent differences in gene expression.

    “The differences in gene expression profiles in the presence of the different STAT3 spliceforms, but also following cell exposure to cytokine, highlight further the remarkable spliceform-dependent differences in gene expression.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    The results highlight the large repertoire of STAT3α- and STAT3β-dependent changes, and that the STAT3β-dependent changes do not simply recapitulate the STAT3α-dependent changes observed.

    “These results thus highlight the large repertoire of STAT3α- and STAT3β-dependent changes, and that the STAT3β-dependent changes do not simply recapitulate the STAT3α-dependent changes observed.”
    Quote in the paperSubstantial claim
46 of 46
  • The paper relies on this without support.

    The gene expression changes observed in iSTAT3β MEFs are direct transcriptional consequences of STAT3β activity rather than indirect or secondary effects.

    “transcriptome profiling of STAT3−/− cells expressing either STAT3α or STAT3β, revealing the complexity of genes that are up- and down-regulated by the STAT3 spliceforms, including a distinct set of STAT3β-specific genes regulated under basal conditions and after cytokine stimulation.”
    “These results highlight STAT3β as a significant transcriptional regulator in its own right”
  • The paper relies on this without support.

    The prolonged phosphorylation and nuclear retention of STAT3β are responsible for the greater number of genes regulated by STAT3β than by STAT3α.

    “the physiological significance of prolonged phosphorylation was highlighted with a greater number of genes regulated by STAT3β than regulated by STAT3α.”
2 of 2

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

  • STAT3α up-regulated gene count omits shared genes

    Minor

    The paper reports 256 gene changes in iSTAT3α MEFs, of which 235 were down-regulated, leaving 21 up-regulated-not 16. The reported 16 matches the number of unique up-regulated changes and omits the five shared up-regulated changes.

    Reported 16 · recomputed 21

  • STAT3β up-regulated gene count omits shared genes

    Minor

    The paper reports 501 gene changes in iSTAT3β MEFs, of which 418 were down-regulated, leaving 83 up-regulated-not 78. The reported 78 matches the number of unique up-regulated changes and omits the five shared up-regulated changes.

    Reported 78 · recomputed 83

2 of 2

Cites

Flagged first, then by citations

1 of the 58 references couldn’t be matched to a known paper.

Research works printed but not linked: 1

  1. Hu, 2008, CateGOrizer: a web-based program to batch analyze gene ontology classification categories, Online J. Bioinform., 9, 108

Cited by

Sorted by citations

Authors
Ng, I. H. W., Ng, D. C. H., Jans, D. A., & Bogoyevitch, M. A.
Affiliations
  • The University of Melbourne (AU)
  • Monash University (AU)
Venue
Biochemical Journal
Published
2012-09-12
Volume
447
Issue
1
Pages
125-136
ISSN
  • 0264-6021 (ISSN-L)
  • 1470-8728
OpenAlex
W2003577074
Cited by
63
References
58
Citations by year
2026: 4 · 2025: 3 · 2024: 7 · 2023: 3 · 2022: 3 · 2021: 2 · 2020: 5 · 2019: 6 · 2018: 5 · 2017: 2 · 2016: 3 · 2015: 10 · 2014: 8 · 2013: 2
FWCI
2.84
Type
journal article
Language
en
Open access
Locations
  • Biochemical Journal (publishedVersion, cc-by-nc)
  • PubMed (publishedVersion)
  • Minerva Access (University of Melbourne) (submittedVersion, cc-by-nc)
  • PubMed Central (submittedVersion, cc-by-nc)
Funders
  • National Heart Foundation of Australia
  • Monash University
  • Peter MacCallum Cancer Centre
  • Università degli Studi di Torino
  • Medical Research Council
  • National Health and Medical Research Council (1002486, 353592)
Topics
  • Health Sciences › Medicine › Oncology › Cytokine Signaling Pathways and Interactions
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Tyrosine Phosphatases
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
Keywords
STAT3, STAT3β, alternative splicing, tyrosine phosphorylation, nuclear translocation, nuclear retention, cytokine signaling, SH2 domain, transcriptional regulation, gene expression profiling
MeSH terms
Animals, Base Sequence, Cell Nucleus, Cells, Cultured, Humans, Kinetics, Phosphorylation, Tyrosine, Gene Expression, Cytokines, Mutagenesis, Site-Directed, Alternative Splicing, DNA Primers, src Homology Domains, Amino Acid Substitution, STAT3 Transcription Factor, Mice, Gene Knockout Techniques, HEK293 Cells

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-23.

Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-23.

Cited sources are checked by gpt-6-sol.

Statistics and arithmetic are recomputed, not judged.

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