Cited by 176Circadian rhythm and melatoninSleep and Work-Related FatigueMetabolomics and Mass Spectrometry Studies

Separation of circadian- and behavior-driven metabolite rhythms in humans provides a window on peripheral oscillators and metabolism

Open access
Skene, Debra J., Skornyakov, Elena, Chowdhury, Namrata R., Gajula, Rajendra P., Middleton, Benita, Satterfield, Brieann C., Porter, Kenneth I., Van Dongen, Hans P. A. +1 more·2018·Proceedings of the National Academy of Sciences

Abstract

Significance: Shift workers, whose schedules are misaligned relative to their suprachiasmatic nuclei (SCN) circadian pacemaker, are at elevated risk of metabolic disorders. In a study of simulated day- versus night-shift work followed by a constant routine, we separated plasma-circulating metabolites according to whether their 24-h rhythms aligned with the central SCN pacemaker or instead reflected externally imposed behavioral schedules. We found that rhythms in many metabolites implicated in food metabolism dissociated from the SCN pacemaker rhythm, with the vast majority aligning with the preceding sleep/wake and feeding/fasting cycles. Our metabolomics study yields insight into the link between prolonged exposure to shift work and the spectrum of associated metabolic disorders by providing a window into peripheral oscillators and the biobehavioral factors that orchestrate them.

AI snapshot

Written from the paper’s full text.

TL;DR

In a controlled simulated shift-work study, most plasma metabolite rhythms after night-shift exposure tracked prior behavioral schedules rather than the central SCN pacemaker. The findings suggest that externally imposed sleep/wake and feeding/fasting cycles can drive peripheral metabolic rhythmicity and dissociate it from central circadian timing.

Key findings

  • Central circadian markers—DLMO, plasma cortisol, and PER3 expression—showed only a ∼2 h delay after the simulated night-shift condition, indicating the SCN pacemaker was resistant to phase shifting.
  • Of 132 targeted plasma metabolites, 65 showed significant 24-h rhythmicity during constant routine under either or both conditions; 62 of 132 showed profound timing changes after simulated night work.
  • Among 27 metabolites rhythmic under both conditions, only 3—serotonin, taurine, and sarcosine—maintained approximately stable peak timing relative to central circadian markers; 24 shifted, often reversing by ∼12 h, and aligned with the preceding behavioral cycles.
  • Pathway analyses found 9 significantly enriched pathways after the day-shift condition and 5 after the night-shift condition, including aminoacyl-tRNA biosynthesis, nitrogen metabolism, and arginine–proline metabolism in both.

Methods

  • Between-groups in-laboratory study: healthy volunteers ages 22–34 y were assigned to 3 d of simulated night shift (n = 7) or simulated day shift (n = 7), followed by a 24-h constant routine.
  • Blood samples were taken during constant routine at intervals of 1–3 h for targeted LC/MS metabolomics of 132 circulating metabolites from 5 classes, plus cortisol and PER3 assays; additional hourly samples were used for melatonin assays.
  • Metabolite rhythms were assessed with cosinor analysis, corroborated by principal component analysis and pathway analyses.

Limitations

  • The paper states that the 24-h constant routine was relatively short, the targeted metabolomics approach did not cover the entire metabolome, and the paradigm could not disentangle which external time cues—light/dark exposure, sleep/wakefulness, rest/activity, and/or feeding/fasting—drove the behavior-driven rhythms.
  • The paper also states that the study involved acute simulated night-shift work in healthy non–shift-working volunteers, so results do not readily generalize to real-world shift-work settings, and the sample of 14 subjects was relatively small.
  • Evident from the text: the between-groups design and 3-d exposure limit causal inference about longer-term adaptation and chronic metabolic outcomes.

Model-written summary. Check it against the paper before relying on it.

Integrity signals

Registry

Crossref · 10.1073/pnas.1801183115

Cites

46 of 46 references verified0 citation errors · 0 not checkable

Statistics

Nothing to recompute.

Claims the paper makes

0 of 13 cited sources checked · 0 supported · 0 flagged

  • Findingown data

    Of the 27 metabolites rhythmic under both conditions, only three (serotonin, taurine, and sarcosine) maintained approximately the same peak time following both schedules.

    “Only three of these metabolites maintained approximately the same peak time following both the simulated day-shift and night-shift schedules (as did the traditional circadian markers, DLMO and cortisol peak): serotonin, taurine, and sarcosine (Fig. 2, Left).”
    Quote in the paperSubstantial claim
  • Findingreasoning

    The night-shift condition successfully produced misalignment between behavioral rhythms shifted by 12 h and the relatively unyielding rhythm of the central SCN pacemaker.

    “Thus, the night-shift condition successfully produced misalignment between behavioral rhythms (light/dark exposure; sleep/wakefulness; rest/activity; feeding/fasting), which were shifted by 12 h under the simulated night-shift condition, and the relatively unyielding rhythm of the central SCN pacemaker.”
    Quote in the paperSubstantial claim
  • Findingown data

    Nearly half of the analyzed metabolites (65 of 132) showed significant 24-h rhythmicity during constant routine under either or both conditions.

    “Nearly half of the metabolites analyzed (i.e., 65 of 132) showed significant 24-h rhythmicity during the constant routine under either or both conditions.”
    Quote in the paperSubstantial claim
  • Findingown data

    A delay of approximately 2 h was observed after the night-shift condition regardless of which rhythm marker was used.

    “A delay of ∼2 h was observed after the night-shift condition, regardless of which rhythm marker was used”
    Quote in the paperSubstantial claim
  • Findingown data

    During constant routine after 3 d of simulated shift work, DLMO, plasma cortisol rhythm, and PER3 expression rhythm showed relatively little phase difference between day-shift and night-shift conditions.

    “During the constant routine after 3 d of simulated shift work, the dim light melatonin onset (DLMO) and the 24-h rhythm of plasma cortisol (traditional markers of the central SCN pacemaker) as well as the 24-h rhythm in clock gene PER3 expression all showed relatively little phase difference between the day-shift and night-shift conditions (SI Appendix, Figs. S2–S4).”
    Quote in the paperSubstantial claim
  • May combine two claims. 8
  • The quote only partly states this claim. 1
  • Classified as probably not a substantial claim. 1
  • May combine two claims.

    Findingown data

    Among rhythmic metabolites, 27 were rhythmic under both schedules, 19 lost rhythmicity after night-shift, and 19 emerged after night-shift.

    “Of these, a group of 27 metabolites showed rhythmicity following both the simulated day-shift and night-shift schedules. A group of 19 metabolites lost their rhythmicity under constant routine following the night-shift schedule. For another group of 19 metabolites, no significant rhythmicity was observed following the day-shift schedule, but rhythmicity emerged under constant routine following the”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    In the current study, many plasma metabolites (62 of 132) showed profound changes in the timing of their rhythms following simulated night work, whereas traditional SCN clock markers remained relatively stable after 3 d of simulated shift work.

    “We found that, whereas traditional markers of the circadian clock in the SCN (melatonin, cortisol, PER3 expression) remained relatively stable after 3 d of simulated shift work, many of the plasma metabolites (62 of 132) showed profound changes in the timing of their rhythms following simulated night work (Fig. 1; SI Appendix, Table S1).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Under constant routine following simulated night-shift, 24 metabolites significantly shifted-and in most cases essentially reversed (shifted by 12 h)-their rhythms.

    “By contrast, under constant routine following the simulated night-shift schedule, 24 metabolites significantly shifted—and in most cases essentially reversed (i.e., shifted by 12 h)—their rhythms.”
    Quote in the paperSubstantial claim
  • May combine two claims. The quote only partly states this claim.

    Findingown data

    Under the day-shift condition nine pathways were significantly enriched, and under the night-shift condition five pathways were significantly enriched.

    “Under the day-shift condition, nine pathways were significantly enriched (SI Appendix, Table S3), including aminoacyl-tRNA biosynthesis, nitrogen metabolism, arginine–proline metabolism, and d-glutamine–glutamate metabolism—as well as alanine–asparate–glutamate metabolism, cyanoamino acid metabolism, d-arginine and d-ornithine metabolism, glutathione metabolism, and glycine–serine–threonine”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Premisecitation

    Melatonin and cortisol rhythms are driven directly by SCN timing and are reliable markers of the phase of the central SCN clock.

    “The rhythmic production of the hormones melatonin and cortisol is driven directly by SCN timing; these hormones are therefore considered reliable markers of the phase of the central SCN clock (8).”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites [8] Arendt J Skene DJ 2005 Melatonin as a chronobiotic Sleep Med Rev 9 25 39 15649736 source

      Not checked in the free run.

  • May combine two claims.

    Interpretationown data

    The SCN pacemaker was resistant to phase shifting by the behaviorally imposed schedule, and adaptation of the endogenous SCN timing system to the night-shift schedule was limited.

    “This indicates that the SCN pacemaker was resistant to phase shifting by the behaviorally imposed schedule, as expected, and that adaptation of the endogenous SCN timing system to the night-shift schedule was limited.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Study design and conductcitation

    The targeted metabolomics approach used is quantitative and reliable and can be more readily confirmed and validated in other laboratories compared with whole-metabolome analyses.

    “While our targeted approach is restrictive in that regard, it is quantitative and reliable (39) and, compared with whole-metabolome analyses, can be more readily confirmed and validated in other laboratories.”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [39] Siskos AP 2017 Interlaboratory reproducibility of a targeted metabolomics platform for analysis of human serum and plasma Anal Chem 89 656 665 27959516 PMC6317696 source

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    The 24-h duration of the constant routine protocol was relatively short, which is a limitation of the study.

    “The 24-h duration of our constant routine protocol was relatively short, which is a limitation of the study.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Interpretationreasoning

    The study involved acute exposure to simulated night-shift work in healthy non-shift-working volunteers inside the laboratory, and the results therefore do not readily generalize to real-world shift-work settings.

    “Although our study involved acute exposure to simulated night-shift work in healthy non–shift-working volunteers inside the laboratory, and the results therefore do not readily generalize to real-world shift-work settings”
    Quote in the paperNot a substantial claim
9 of 9
  • The paper relies on this without support.

    The mechanisms linking shift work with an increased risk of type 2 diabetes are not well understood.

    “The mechanisms linking shift work with an increased risk of type 2 diabetes are not well understood.”
  • The paper relies on this without support.

    A reliable tool to separate circadian- and behavior-driven rhythms in metabolism to test the misalignment hypothesis has been lacking.

    “However, a reliable tool to separate circadian- and behavior-driven rhythms in metabolism to test this hypothesis has been lacking.”
  • The paper relies on this without support.

    It remains unknown whether oscillations in metabolites that remain rhythmic under constant routine are driven by the central SCN pacemaker or reflect peripheral oscillators continuing to cycle without externally imposed behavioral time cues.

    “It remains unknown whether the oscillations seen in metabolites that remain rhythmic under constant routine conditions are driven by the central SCN pacemaker or whether they are reflections of peripheral oscillators that continue to cycle in the absence of externally imposed behavioral time cues that were initially driving them.”
  • The paper relies on this without support.

    Plasma-circulating metabolite rhythms can serve as biomarkers of peripheral clock disturbances.

    “Investigating rhythms in circulating metabolites as biomarkers of peripheral clock disturbances may enable this, thereby offering an important step forward.”
4 of 4

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Shift workers or people who sleep poorly are more likely to develop obesity and T2DM due to circadian clock disruption.

    “Shift workers or people who sleep poorly are more likely to develop obesity and T2DM due to circadian clock disruption 31, 32, 33, 34, 35, 36, 37.”

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

Each contradiction between two passages listed here was confirmed by an independent check.

  • Arginine-ornithine pathway described as both absent and enriched after night shift

    Minor

    The day-shift results say the d-arginine and d-ornithine metabolism pathway was not significantly enriched under night shift, but the night-shift results list d-arginine-ornithine metabolism among the significantly enriched pathways.

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Authors
Skene, D. J., Skornyakov, E., Chowdhury, N. R., Gajula, R. P., Middleton, B., Satterfield, B. C., Porter, K. I., Van Dongen, H. P. A., & Gaddameedhi, S.
Affiliations
  • University of Surrey (GB)
  • Eastern Washington University (US)
  • Washington State University Spokane (US)
  • University of Arizona (US)
  • Sleep and Performance Research Center, Washington State University, Spokane, WA 99210;
Venue
Proceedings of the National Academy of Sciences
Published
2018-07-10
Volume
115
Issue
30
Pages
7825-7830
ISSN
  • 0027-8424 (ISSN-L)
  • 1091-6490
OpenAlex
W2814914586
Cited by
176
References
46
Citations by year
2026: 16 · 2025: 16 · 2024: 25 · 2023: 25 · 2022: 23 · 2021: 21 · 2020: 28 · 2019: 15 · 2018: 7
FWCI
9.99
Type
journal article
Language
en
Open access
Locations
  • Proceedings of the National Academy of Sciences (publishedVersion, cc-by-nc-nd)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by-nc-nd)
  • PubMed Central (publishedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
  • Surrey Research Insight Open Access (The University of Surrey) (submittedVersion)
Funders
  • DOD | United States Army | MEDCOM | Congressionally Directed Medical Research Programs (W81XWH-16-1-0319)
  • HHS | NIH | National Institute of Environmental Health Sciences (R00ES022640)
  • RCUK | Biotechnology and Biological Sciences Research Council (BB/I019405/1)
  • EC | Seventh Framework Programme (FP7-HEALTH-2011)
Topics
  • Life Sciences › Neuroscience › Endocrine and Autonomic Systems › Circadian rhythm and melatonin
  • Social Sciences › Psychology › Experimental and Cognitive Psychology › Sleep and Work-Related Fatigue
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Metabolomics and Mass Spectrometry Studies
Keywords
circadian rhythm, shift work, suprachiasmatic nucleus, peripheral oscillators, constant routine, sleep-wake cycle, feeding-fasting cycle, food metabolism, metabolic disorders, plasma metabolites, circadian misalignment
MeSH terms
Adult, Biological Clocks, Circadian Rhythm, Fasting, Female, Gene Expression Regulation, Humans, Hydrocortisone, Male, Melatonin, Period Circadian Proteins

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