The DOI matches its Crossref record; 48 of the 48 references it cites were found in a registry or an index.
Using hominin introgression to trace modern human dispersals
Open accessAbstract
The dispersal of anatomically modern human populations out of Africa and across much of the rest of the world around 55 to 50 thousand years before present (ka) is recorded genetically by the multiple hominin groups they met and interbred with along the way, including the Neandertals and Denisovans. The signatures of these introgression events remain preserved in the genomes of modern-day populations, and provide a powerful record of the sequence and timing of these early migrations, with Asia proving a particularly complex area. At least 3 different hominin groups appear to have been involved in Asia, of which only the Denisovans are currently known. Several interbreeding events are inferred to have taken place east of Wallace’s Line, consistent with archaeological evidence of widespread and early hominin presence in the area. However, archaeological and fossil evidence indicates archaic hominins had not spread as far as the Sahul continent (New Guinea, Australia, and Tasmania), where recent genetic evidence remains enigmatic.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The source backs part of the claim, not all of it — or backs it for a different population, condition or comparison.
In the citing paper
“Indeed, the patterning of Denisovan ancestry across ISEA is consistent with separate Denisovan introgression events in the Philippines 19 and, potentially, in Flores 23,43 , the island homes of H. luzonensis and H. floresiensis , respectively.”
From Widespread Denisovan ancestry in Island Southeast Asia but no evidence of substantial super-archaic hominin admixture (2021) · cites this paper as [23]
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
A draft sequence of the Neandertal genome
Green, R. E., Krause, J., Briggs, A. W., Maricic, T., Stenzel, U., Kircher, M., Patterson, N., Li, H., Zhai, W., Fritz, M. H.-Y., et al. (2010) · Science · doi:10.1126/science.1188021 · Cited by 4,318
The complete genome sequence of a Neanderthal from the Altai Mountains
Prüfer, K., Racimo, F., Patterson, N., Jay, F., Sankararaman, S., Sawyer, S., Heinze, A., Renaud, G., Sudmant, P. H., de Filippo, C., et al. (2014) · Nature · doi:10.1038/nature12886 · Cited by 2,254
A high-coverage genome sequence from an archaic denisovan individual
Meyer, M., Kircher, M., Gansauge, M.-T., Li, H., Racimo, F., Mallick, S., Schraiber, J. G., Jay, F., Prüfer, K., de Filippo, C., et al. (2012) · Science · doi:10.1126/science.1224344 · Cited by 1,967
Genome sequence of a 45,000-year-old modern human from western Siberia
Fu, Q., Li, H., Moorjani, P., Jay, F., Slepchenko, S. M., Bondarev, A. A., Johnson, P. L. F., Aximu-Petri, A., Prüfer, K., de Filippo, C., et al. (2014) · Nature · doi:10.1038/nature13810 · Cited by 1,023
The complete mitochondrial DNA genome of an unknown hominin from southern Siberia
Krause, J., Fu, Q., Good, J. M., Viola, B., Shunkov, M. V., Derevianko, A. P., & Pääbo, S. (2010) · Nature · doi:10.1038/nature08976 · Cited by 818
A high-coverage Neandertal genome from Vindija Cave in Croatia
Prüfer, K., de Filippo, C., Grote, S., Mafessoni, F., Korlević, P., Hajdinjak, M., Vernot, B., Skov, L., Hsieh, P., Peyrégne, S., et al. (2017) · Science · doi:10.1126/science.aao1887 · Cited by 719
Mapping Human Genetic Diversity in Asia
Abdulla, M. A., Ahmed, I., Assawamakin, A., Bhak, J., Brahmachari, S. K., Calacal, G. C., Chaurasia, A., Chen, C.-H., Chen, J., Chen, Y.-T., et al. (2009) · Science · doi:10.1126/science.1177074 · Cited by 707
Denisova Admixture and the First Modern Human Dispersals into Southeast Asia and Oceania
Reich, D., Patterson, N., Kircher, M., Delfin, F., Nandineni, M. R., Pugach, I., Ko, A. M.-S., Ko, Y.-C., Jinam, T. A., Phipps, M. E., et al. (2011) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2011.09.005 · Cited by 656
Resurrecting Surviving Neandertal Lineages from Modern Human Genomes
Vernot, B., & Akey, J. M. (2014) · Science · doi:10.1126/science.1245938 · Cited by 562
The prehistoric peopling of Southeast Asia
McColl, H., Racimo, F., Vinner, L., Demeter, F., Gakuhari, T., Moreno-Mayar, J. V., van Driem, G., Gram Wilken, U., Seguin-Orlando, A., de la Fuente Castro, C., et al. (2018) · Science · doi:10.1126/science.aat3628 · Cited by 517
The Combined Landscape of Denisovan and Neanderthal Ancestry in Present-Day Humans
Sankararaman, S., Mallick, S., Patterson, N., & Reich, D. (2016) · Current Biology · doi:10.1016/j.cub.2016.03.037 · Cited by 465
Neandertal and Denisovan DNA from Pleistocene sediments
Slon, V., Hopfe, C., Weiß, C. L., Mafessoni, F., de la Rasilla, M., Lalueza-Fox, C., Rosas, A., Soressi, M., Knul, M. V., Miller, R., et al. (2017) · Science · doi:10.1126/science.aam9695 · Cited by 465
A late Middle Pleistocene Denisovan mandible from the Tibetan Plateau
Chen, F., Welker, F., Shen, C.-C., Bailey, S. E., Bergmann, I., Davis, S., Xia, H., Wang, H., Fischer, R., Freidline, S. E., et al. (2019) · Nature · doi:10.1038/s41586-019-1139-x · Cited by 454
Ancient genomes document multiple waves of migration in Southeast Asian prehistory
Lipson, M., Cheronet, O., Mallick, S., Rohland, N., Oxenham, M. F., Pietrusewsky, M., Pryce, T. O., Willis, A., Matsumura, H., Buckley, H. R., et al. (2018) · Science · doi:10.1126/science.aat3188 · Cited by 429
The genome of the offspring of a Neanderthal mother and a Denisovan father
Slon, V., Mafessoni, F., Vernot, B., de Filippo, C., Grote, S., Viola, B., Hajdinjak, M., Peyrégne, S., Nagel, S., Brown, S., et al. (2018) · Nature · doi:10.1038/s41586-018-0455-x · Cited by 395
Analysis of Human Sequence Data Reveals Two Pulses of Archaic Denisovan Admixture
Browning, S. R., Browning, B. L., Zhou, Y., Tucci, S., & Akey, J. M. (2018) · Cell · doi:10.1016/j.cell.2018.02.031 · Cited by 381
Aboriginal mitogenomes reveal 50,000 years of regionalism in Australia
Tobler, R., Rohrlach, A. B., Soubrier, J., Bover, P. R., Llamas, B., Tuke, J., Bean, N. G., Abdullah-Highfold, A., Agius, S., O’Donoghue, A., et al. (2017) · Nature · doi:10.1038/nature21416 · Cited by 376
Self-citationMultiple Deeply Divergent Denisovan Ancestries in Papuans
Jacobs, G. S., Hudjashov, G., Saag, L., Kusuma, P., Darusallam, C. C., Lawson, D. J., Mondal, M., Pagani, L., Ricaut, F.-X., Stoneking, M., et al. (2019) · Cell · doi:10.1016/j.cell.2019.02.035 · Cited by 346
Revised stratigraphy and chronology for Homo floresiensis at Liang Bua in Indonesia
Sutikna, T., Tocheri, M. W., Morwood, M. J., Saptomo, E. W., Jatmiko, Awe, R. D., Wasisto, S., Westaway, K. E., Aubert, M., Li, B., et al. (2016) · Nature · doi:10.1038/nature17179 · Cited by 330
Reconstructing Austronesian population history in Island Southeast Asia
Lipson, M., Loh, P., Patterson, N. J., Moorjani, P., Ko, Y., Stoneking, M., Berger, B., & Reich, D. (2014) · Nature Communications · doi:10.1038/ncomms5689 · Cited by 301
Possible Ancestral Structure in Human Populations
Plagnol, V., & Wall, J. D. (2006) · PLoS Genetics · doi:10.1371/journal.pgen.0020105 · Cited by 275
Nuclear and mitochondrial DNA sequences from two Denisovan individuals
Sawyer, S., Renaud, G., Viola, B., Hublin, J., Gansauge, M.-T., Shunkov, M. V., Derevianko, A. P., Prüfer, K., Kelso, J. F., & Pääbo, S. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1519905112 · Cited by 257
New evidence for a 67,000-year-old human presence at Callao Cave, Luzon, Philippines
Mijares, A. S. B., Détroit, F., Piper, P. J., Grün, R., Bellwood, P. S., Aubert, M., Champion, G., Cuevas, N. T., Leon, A. S. D., & Dizon, E. (2010) · Journal of Human Evolution · doi:10.1016/j.jhevol.2010.04.008 · Cited by 251
Higher Levels of Neanderthal Ancestry in East Asians than in Europeans
Wall, J. D., Yang, M. A., Jay, F., Kim, S. K., Durand, E. Y., Stevison, L. S., Gignoux, C., Woerner, A., Hammer, M. F., & Slatkin, M. (2013) · Genetics · doi:10.1534/genetics.112.148213 · Cited by 249
Ancient Genomics of Modern Humans: The First Decade
Skoglund, P., & Mathieson, I. (2018) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev-genom-083117-021749 · Cited by 246
When did Homo sapiens first reach Southeast Asia and Sahul?
O’Connell, J. F., Allen, J., Williams, M. A. J., Williams, A. N., Turney, C. S. M., Spooner, N. A., Kamminga, J., Brown, G., & Cooper, A. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1808385115 · Cited by 236
Self-citationA new species of Homo from the Late Pleistocene of the Philippines
Détroit, F., Mijares, A. S., Corny, J., Daver, G., Zanolli, C., Dizon, E., Robles, E., Grün, R., & Piper, P. J. (2019) · Nature · doi:10.1038/s41586-019-1067-9 · Cited by 230
Timing of archaic hominin occupation of Denisova Cave in southern Siberia
Jacobs, Z. L., Li, B., Shunkov, M. V., Kozlikin, M. B., Bolikhovskaya, N. S., Agadjanian, A. K., Uliyanov, V. A., Vasiliev, S. K., O’Gorman, K., Derevianko, A. P., et al. (2019) · Nature · doi:10.1038/s41586-018-0843-2 · Cited by 227
Late Pleistocene archaic human crania from Xuchang, China
Li, Z., Wu, X., Zhou, L., Liu, W., Gao, X., Nian, X., & Trinkaus, E. (2017) · Science · doi:10.1126/science.aal2482 · Cited by 205
Multiple episodes of interbreeding between Neanderthal and modern humans
Villanea, F. A., & Schraiber, J. G. (2018) · Nature Ecology & Evolution · doi:10.1038/s41559-018-0735-8 · Cited by 192
Complex Patterns of Admixture across the Indonesian Archipelago
Hudjashov, G., Karafet, T. M., Lawson, D. J., Downey, S., Savina, O., Sudoyo, H., Lansing, J. S., Hammer, M. F., & Cox, M. P. (2017) · Molecular Biology and Evolution · doi:10.1093/molbev/msx196 · Cited by 191
On the Physical Geography of the Malay Archipelago
Wallace, A. R. (1863) · Journal of the Royal Geographical Society of London · doi:10.2307/1798448 · Cited by 184
Homo floresiensis-like fossils from the early Middle Pleistocene of Flores
van den Bergh, G. D., Kaifu, Y., Kurniawan, I., Kono, R. T., Brumm, A., Setiyabudi, E., Aziz, F., & Morwood, M. J. (2016) · Nature · doi:10.1038/nature17999 · Cited by 171
Least-cost pathway models indicate northern human dispersal from Sunda to Sahul
Kealy, S., Louys, J., & O'Connor, S. (2018) · Journal of Human Evolution · doi:10.1016/j.jhevol.2018.10.003 · Cited by 169
Age estimates for hominin fossils and the onset of the Upper Palaeolithic at Denisova Cave
Douka, K., Slon, V., Jacobs, Z., Ramsey, C. B., Shunkov, M. V., Derevianko, A. P., Mafessoni, F., Kozlikin, M. B., Li, B., Grün, R., et al. (2019) · Nature · doi:10.1038/s41586-018-0870-z · Cited by 165
Earliest hominin occupation of Sulawesi, Indonesia
van den Bergh, G. D., Li, B., Brumm, A., Grün, R., Yurnaldi, D., Moore, M. W., Kurniawan, I., Setiawan, R., Aziz, F., Roberts, R. G., et al. (2016) · Nature · doi:10.1038/nature16448 · Cited by 160
Denisovan Ancestry in East Eurasian and Native American Populations
Qin, P., & Stoneking, M. (2015) · Molecular Biology and Evolution · doi:10.1093/molbev/msv141 · Cited by 157
Cultural innovation and megafauna interaction in the early settlement of arid Australia
Hamm, G., Mitchell, P., Arnold, L. J., Prideaux, G. J., Questiaux, D. G., Spooner, N. A., Levchenko, V. A., Foley, E., Worthy, T. H., Stephenson, B., et al. (2016) · Nature · doi:10.1038/nature20125 · Cited by 150
Climate change not to blame for late Quaternary megafauna extinctions in Australia
Saltré, F., Rodríguez-Rey, M., Brook, B. W., Johnson, C. N., Turney, C. S. M., Alroy, J., Cooper, A., Beeton, N., Bird, M. I., Fordham, D. A., et al. (2016) · Nature Communications · doi:10.1038/ncomms10511 · Cited by 136
Self-citationDetecting archaic introgression using an unadmixed outgroup
Skov, L., Hui, R., Shchur, V., Hobolth, A., Scally, A., Schierup, M. H., & Durbin, R. (2018) · PLoS Genetics · doi:10.1371/journal.pgen.1007641 · Cited by 125
Mondal, M., Bertranpetit, J., & Lao, O. (2019) · Nature Communications · doi:10.1038/s41467-018-08089-7 · Cited by 124
Slon, V., Viola, B., Renaud, G., Gansauge, M.-T., Benazzi, S., Sawyer, S., Hublin, J., Shunkov, M. V., Derevianko, A. P., Kelso, J. F., et al. (2017) · Science Advances · doi:10.1126/sciadv.1700186 · Cited by 116
Jinam, T. A., Phipps, M. E., Aghakhanian, F., Majumder, P. P., Datar, F., Stoneking, M., Sawai, H., Nishida, N., Tokunaga, K., Kawamura, S., et al. (2017) · Genome Biology and Evolution · doi:10.1093/gbe/evx118 · Cited by 103
Did the Denisovans Cross Wallace's Line?
Cooper, A., & Stringer, C. B. (2013) · Science · doi:10.1126/science.1244869 · Cited by 97
Self-citationEvolutionary history and adaptation of a human pygmy population of Flores Island, Indonesia
Tucci, S., Vohr, S. H., McCoy, R. C., Vernot, B., Robinson, M. R., Barbieri, C., Nelson, B. J., Fu, W., Purnomo, G. A., Sudoyo, H., et al. (2018) · Science · doi:10.1126/science.aar8486 · Cited by 97
Archaic Hominin Populations in Asia before the Arrival of Modern Humans
Kaifu, Y. (2017) · Current Anthropology · doi:10.1086/694318 · Cited by 61
Karnatukul (Serpent’s Glen): A new chronology for the oldest site in Australia’s Western Desert
McDonald, J., Reynen, W., Petchey, F., Ditchfield, K., Byrne, C. J., Vannieuwenhuyse, D., Leopold, M., & Veth, P. (2018) · PLoS ONE · doi:10.1371/journal.pone.0202511 · Cited by 52
On the Physical Geography of the Malay Archipelago
Wallace, A. R. (1862) · Proceedings of the Royal Geographical Society of London · doi:10.2307/1799061 · Cited by 34
Cited by
Sorted by citations
Kaufman, D. A., & Himmelmann, N. P. (2024) · Oxford University Press eBooks · doi:10.1093/oso/9780198807353.003.0042 · Cited by 264
The Genomics of Human Local Adaptation
Rees, J., Castellano, S., & Andrés, A. M. (2020) · Trends in Genetics · doi:10.1016/j.tig.2020.03.006 · Cited by 132
Genome of a middle Holocene hunter-gatherer from Wallacea
Carlhoff, S., Duli, A., Nägele, K., Nur, M., Skov, L., Sumantri, I., Oktaviana, A. A., Hakim, B., Burhan, B., Syahdar, F. A., et al. (2021) · Nature · doi:10.1038/s41586-021-03823-6 · Cited by 107
The languages of Halmahera and West New Guinea
Gasser, E., Arnold, L., & Kamholz, D. (2024) · Oxford University Press eBooks · doi:10.1093/oso/9780198807353.003.0037 · Cited by 88
Purnomo, G. A., Mitchell, K. J., O’Connor, S., Kealy, S., Taufik, L., Schiller, S., Rohrlach, A. B., Cooper, A., Llamas, B., Sudoyo, H., et al. (2021) · Genes · doi:10.3390/genes12070965 · Cited by 75
Self-citation
Metadata
- Authors
- Teixeira, J. C., & Cooper, A.
- Affiliations
- University of Utah (US)
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2019-07-12
- Volume
- 116
- Issue
- 31
- Pages
- 15327-15332
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC6681743
- OpenAlex
- W2956544692
- Cited by
- 136
- References
- 48
- Citations by year
- 2026: 1 · 2025: 46 · 2024: 62 · 2023: 8 · 2022: 3 · 2021: 11 · 2020: 5
- FWCI
- 21.76
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Adelaide Research & Scholarship (AR&S) (University of Adelaide) (submittedVersion)
- Funders
- Australian Research Council (IN180100017, FL140100260)
- Topics
- Social Sciences › Anthropology › Pleistocene-Era Hominins and Archaeology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Forensic and Genetic Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic diversity and population structure
- Keywords
- modern human dispersal, Neanderthals, Denisovans, out-of-Africa migration, interbreeding, Wallace's Line, archaic humans, human evolution
- MeSH terms
- Africa, Animals, Asia, Southeastern, DNA, Geography, Humans, Population Dynamics, Hominidae, Human Migration
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review