Molecular Basis for Increased Risk for Late-onset Alzheimer Disease Due to the Naturally Occurring L28P Mutation in Apolipoprotein E4
Open accessAbstract
The apolipoprotein (apo) E4 isoform has consistently emerged as a susceptibility factor for late-onset Alzheimer disease (AD), although the exact mechanism is not clear. A rare apoE4 mutant, apoE4[L28P] Pittsburgh, burdens carriers with an added risk for late-onset AD and may be a useful tool for gaining insights into the role of apoE4 in disease pathogenesis. Toward this end, we evaluated the effect of the L28P mutation on the structural and functional properties of apoE4. ApoE4[L28P] was found to have significantly perturbed thermodynamic properties, to have reduced helical content, and to expose a larger portion of the hydrophobic surface to the solvent. Furthermore, this mutant is thermodynamically destabilized and more prone to proteolysis. When interacting with lipids, apoE4[L28P] formed populations of lipoprotein particles with structural defects. The structural perturbations brought about by the mutation were accompanied by aberrant functions associated with the pathogenesis of AD. Specifically, apoE4[L28P] promoted the cellular uptake of extracellular amyloid β peptide 42 (Aβ42) by human neuroblastoma SK-N-SH cells as well as by primary mouse neuronal cells and led to increased formation of intracellular reactive oxygen species that persisted for at least 24 h. Furthermore, lipoprotein particles containing apoE4[L28P] induced intracellular reactive oxygen species formation and reduced SK-N-SH cell viability. Overall, our findings suggest that the L28P mutation leads to significant structural and conformational perturbations in apoE4 and can induce functional defects associated with neuronal Aβ42 accumulation and oxidative stress. We propose that these structural and functional changes underlie the observed added risk for AD development in carriers of apoE4[L28P].
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Written from the paper’s full text.
TL;DR
The naturally occurring apoE4[L28P] mutation causes structural destabilization and misfolding of apoE4, altering lipid interactions and protease sensitivity. These defects are accompanied by AD-relevant cellular dysfunctions: lipid-free apoE4[L28P] promotes neuronal Aβ42 uptake and persistent ROS, while lipidated apoE4[L28P] induces ROS and reduces neuroblastoma cell viability.
Key findings
- ApoE4[L28P] had reduced α-helical content by about 10% versus WT apoE4 (WT = 53.1%), lower thermal stability, and a transition enthalpy 9.1 kcal/mol less than WT; chemical denaturation showed loss of the unfolding intermediate and increased solvent-exposed hydrophobic surface by ANS binding.
- ApoE4[L28P] was more sensitive to elastase, trypsin, and chymotrypsin; protease-resistant WT apoE4 fragments failed to form in the mutant.
- ApoE4[L28P] remodeled DMPC vesicles more slowly and formed reconstituted lipoprotein particles with larger average diameters (17.8 ± 0.3 nm vs. 13.8 ± 0.2 nm for WT; p < 0.0001), with only minor helical and thermal changes in the lipidated state.
- Lipid-free apoE4[L28P], but not WT apoE4, promoted intracellular Aβ42 accumulation in SK-N-SH cells and primary mouse cortical neurons, persisting 24 h after removal; it also increased ROS. Lipidated apoE4[L28P] induced ROS and reduced SK-N-SH viability by 28% at 0.375 µM, a concentration similar to human CSF apoE.
Methods
- Recombinant WT apoE4 and apoE4[L28P] were expressed in *E. coli*, purified, and refolded; biophysical characterization used far-UV CD, thermal and chemical denaturation, ANS fluorescence, DMPC vesicle remodeling kinetics, limited proteolysis, and electron microscopy of reconstituted phosphatidylcholine/cholesterol apoE particles.
- Functional assays used human neuroblastoma SK-N-SH cells and primary mouse cortical neurons; Aβ42 uptake was assessed by confocal microscopy with 25 ng/ml Aβ42 ± 375 nM apoE forms, ROS by DCF fluorescence, and viability by MTT assay at 0.375 or 1 µM apoE for 24 h.
- Data were fitted to thermodynamic/kinetic models and compared with WT or untreated controls, with statistical significance reported versus WT or control.
Limitations
- Stated in the Discussion: prior transgenic mouse work with apoE4[L28P] under a glial promoter showed no AD phenotype, possibly due to glial expression or endogenous mouse apoE compensation; the authors call for future mice expressing apoE4[L28P] in neurons and lacking endogenous mouse apoE. They also note rare variants like apoE4[L28P] are usually missed by GWAS and require resequencing or targeted family studies.
- Evident from the text: the study is limited to recombinant protein, reconstituted lipoproteins, and cultured cells, with no human carrier, brain tissue, or in vivo disease-outcome data; several functional effects depend on lipidation state and, for Aβ42 uptake/ROS, on the presence of Aβ42.
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Claims the paper makes
30 of 57 cited sources checked · 13 supported · 0 flagged · accuracy not yet measured
- Premisecitation
ApoE variants with lower thermodynamic stability and changes in conformational plasticity have been shown to have altered interdomain interactions and defective physiological functions.
“ApoE variants with lower thermodynamic stability and changes in conformational plasticity have been shown to have altered interdomain interactions and defective physiological functions (19, 24 -28).”
Quote in the paperSubstantial claim5 of 6 sources checked- cites [19] Hatters, 2006, Apolipoprotein E structure: insights into function, Trends Biochem. Sci source
- cites [24] Mahley, 2009, Apolipoprotein E: structure determines function, from atherosclerosis to Alzheimer's disease to AIDS, J. Lipid Res source
The section on apoE4 domain interaction reports that structural differences alter interactions between domains, lipid-binding preference, and some detrimental effects. The copy does not establish that these variants have lower thermodynamic stability or variant-specific changes in conformational plasticity; its discussion of conformational change concerns apoE binding to lipid. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [25] Chroni, 2008, Biophysical analysis of progressive C-terminal truncations of human apolipoprotein E4: insights into secondary structure and unfolding properties, Biochemistry source
The Discussion’s “Functional Properties of apoE4 C-Terminal Truncation Mutants” section links altered unfolding behavior to impaired lipid interactions and cholesterol efflux. But it describes a correlation between structural stabilization—not lower stability—and loss of function. The paper discusses N- and C-terminal domain interactions, but does not establish that the functionally impaired truncation variants have altered interdomain interactions. Page numbers are unavailable in our copy. (LLM, conf=0.87)
Experimental — accuracy not yet measured - cites [26] Saito, 2001, Lipid binding-induced conformational change in human apolipoprotein E: evidence for two lipid-bound states on spherical particles, J. Biol. Chem source
The ApoE Conformation on Emulsion section reports that apoE4 adopts different lipid-bound conformations and discusses their effects on LDL-receptor binding. The Effects of Particle Size section also discusses interaction between its N- and C-terminal domains. Neither section establishes that variants with lower thermodynamic stability have altered interdomain interactions and defective physiological functions; the measured thermodynamics concern lipid binding, not protein stability. Page numbers are unavailable in our copy. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [27] Georgiadou, 2011, Biophysical analysis of apolipoprotein E3 variants linked with development of type III hyperlipoproteinemia, PLoS ONE source
The Results report altered stability and conformational behavior in apoE3 variants, and the Discussion proposes that some mutations perturb interdomain interactions (pages not specified). But stability was not uniformly lower, and the Discussion says further functional analysis is needed to establish the role of these changes in apoE3 dysfunction. The claim presents those proposed links and defective physiological function more definitively than this paper does. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [28] Georgiadou, 2013, Thermodynamic and structural destabilization of apoE3 by hereditary mutations associated with the development of lipoprotein glomerulopathy, J. Lipid Res source
The Thermodynamic stability section reports that the studied apoE3 variants are less stable than wild-type, and Mutations cause N-terminus misfolding describes structural changes that perturb normal function (page numbers unavailable). The paper discusses interdomain interactions and proposes conformational changes between domains, but the cited passages do not show that these variants have altered interdomain interactions. (LLM, conf=0.82)
Experimental — accuracy not yet measured
- Premisecitation
The concentration 0.375 M is similar to the reported concentration of apoE in human cerebrospinal fluid (0.365-0.395 M).
“More importantly, toxicity (28% decrease in cell viability) was evident even when lipidated apoE4[L28P] was used at the lower concentration of 0.375 M, which is similar to the reported concentration of apoE in human cerebrospinal fluid (0.365-0.395M) (47,48).”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [47] Kay, 2003, Cerebrospinal fluid apolipoprotein E concentration decreases after traumatic brain injury, J. Neurotrauma source
- cites [48] Wang, 2010, Cerebrospinal fluid apolipoprotein E concentration decreases after seizure, Seizure source
The Results report apoE in control subjects’ cerebrospinal fluid at 13.60 ± 12.11 mg/L, and the Introduction gives apoE’s molecular mass as 32 kDa. That mean converts to approximately 0.425 µM, broadly comparable to 0.375 µM, but the paper does not report the claimed 0.365–0.395 µM range. If the citing sentence’s printed unit “M” is literal rather than an omitted micro symbol, the concentrations are not comparable. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Premisecitation
Recent genome-wide association studies of LOAD identified several common variants of new genes, but with the exception of variants of triggering receptor expressed on myeloid cells 2, no rare variants were identified.
“These studies have identified several common variants of several new genes to be associated with LOAD, but, with the exception of variants of triggering receptor expressed on myeloid cells 2, no rare variants were identified (49,50).”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [49] European Alzheimer's Disease Initiative (EADI), Genetic and Environmental Risk in Alzheimer's Disease, Alzheimer's Disease Genetic Consortium, and Cohorts for Heart and Aging Research in Genomic Epidemiology, 2013, Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease, Nat. Genet source
The paper’s Abstract (page unavailable) reports newly associated LOAD loci and notes a previously identified rare susceptibility variant in TREM2. It does not establish the broader claim that no rare variants other than TREM2 variants had been identified. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [50] Guerreiro, 2013, TREM2 variants in Alzheimer's disease, N. Engl. J. Med source
The introduction lists several loci identified by genome-wide association studies of late-onset Alzheimer’s disease, and the Conclusions identify rare TREM2 variants associated with Alzheimer’s risk. However, the Methods say the rare TREM2 variant was excluded from previously reported GWAS and was investigated here using sequencing and imputed GWAS data. The paper does not establish the broader claim that no other rare variants had been identified. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Findingcitation
Both apoE4[L28P] and apoE4[Δ(166-299)] display the loss of a key unfolding intermediate during chemical denaturation.
“Furthermore, both variants display one common characteristic, namely the loss of a key unfolding intermediate during chemical denaturation (25).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [25] Chroni, 2008, Biophysical analysis of progressive C-terminal truncations of human apolipoprotein E4: insights into secondary structure and unfolding properties, Biochemistry source
The Results section (‘Chemical Unfolding of apoE4’; page not provided) reports that the chemical-denaturation intermediate is essentially absent in apoE4[Δ166–299]. The paper examines C-terminal deletion variants, but our copy does not report this finding for apoE4[L28P], so it supports only one of the two variants named. (LLM, conf=0.89)
Experimental — accuracy not yet measured
- Premisecitation
Rare variants such as apoE4[L28P] are seldom found by initial genome-wide association studies, primarily because of their low representation in the cohort, and require resequencing of large populations or targeted family-based studies and linkage analysis to be identified.
“Rare variants, like apoE4[L28P], although equally important as common variants for disease pathogenesis, are seldom found by initial genome-wide association studies, primarily because of the low representation in the cohort, and require resequencing of large populations or targeted family-based studies and linkage analysis to be identified (51,52).”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [51] Bush, 2012, Chapter 11: Genome-wide association studies, PLoS Comput. Biol source
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured - cites [52] Gibson, 2011, Rare and common variants: twenty arguments, Nat. Rev. Genet source
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
- Findingcitation
The single-amino acid L28P mutation gives apoE4 the ability to promote the intracellular accumulation of amyloid beta 42.
“More importantly this single-amino acid mutation gives apoE4 the ability to promote the intracellular accumulation of A42, a function that has also been found previously in a heavily truncated apoE4 variant, apoE4[(⌬(166 -299)] (10)”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [10] Dafnis, 2010, An apolipoprotein E4 fragment can promote intracellular accumulation of amyloid peptide β 42, J. Neurochem source
- Premisecitation
The truncated apoE4 variant apoE4[Δ(166-299)] has a similar molecular weight to carboxyl-terminal truncated apoE4 fragments found in the brain of Alzheimer disease patients.
“which has a similar molecular weight as carboxyl-terminal truncated apoE4 fragments found in the brain of AD patients (54,55)”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [54] Huang, 2001, Apolipoprotein E fragments present in Alzheimer's disease brains induce neurofibrillary tangle-like intracellular inclusions in neurons, Proc. Natl. Acad. Sci. U.S.A source
- cites [55] Jones, 2011, Apolipoprotein E: isoform specific differences in tertiary structure and interaction with amyloid-β in human Alzheimer brain, PLoS ONE source
The Results (page unavailable) report 17–34 kDa apoE fragments in Alzheimer brain and identify that band as a mixture containing N-terminal fragments, consistent with carboxyl-terminal truncation. The paper does not identify apoE4[Δ(166–299)] or directly compare its molecular weight with those fragments. (LLM, conf=0.78)
Experimental — accuracy not yet measured
- Interpretationcitation
Rare variants in genes associated with Alzheimer disease pathogenesis could explain a significant proportion of the genetic heritability of Alzheimer disease that is not detected by genome-wide association studies.
“suggesting that rare variants in genes associated with AD pathogenesis could explain a significant proportion of genetic heritability of AD, which is not detected by genomewide association studies (53)”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [53] Cruchaga, 2012, Rare variants in APP, PSEN1 and PSEN2 increase risk for AD in late-onset Alzheimer's disease families, PLoS ONE source
- Findingown data
The circular dichroism spectrum of lipid-free apoE4[L28P] had overall a similar shape to the spectrum of WT apoE4.
“The circular dichroism spectrum of lipid-free apoE4[L28P] was found to overall have a similar shape to the spectrum of the WT apoE4, which is identical to spectra reported previously for that molecule (25,29,42,43).”
Quote in the paperNot a substantial claim - Findingown data
ANS binding analysis suggested that the L28P mutation resulted in an increase of the solvent-accessible hydrophobic surface of apoE4.
“The ANS binding analysis suggested that the L28P mutation resulted in an increase of the solvent-accessible hydrophobic surface of apoE4, a finding that could be consistent with exposure of the N-terminal four-helix bundle hydrophobic core because of misfolding (Fig. 2E).”
Quote in the paperSubstantial claim - Findingown data
ApoE4[L28P] displayed a loss of about 10% of helical content compared with WT apoE4.
“ApoE4[L28P] displayed a loss of about 10% of helical content compared with the WT apoE4 (Fig. 2A).”
Quote in the paperSubstantial claim - Findingown data
WT apoE4 had an α-helical content of 53.1% based on the CD signal at 222 nm.
“The calculated ␣-helical content, on the basis of the CD signal at 222 nm, for WT apoE4 was 53.1%, in the middle of the range of 44 -62% that has been reported for the helical content of apoE4 and apoE3, produced by bacterial or mammalian expression systems (22,25,29,(43)(44)(45).”
Quote in the paperSubstantial claim - Findingown data
Lipoprotein particles containing apoE4[L28P] had on average larger diameters (17.8 ± 0.3 nm) compared with WT apoE4 particles (13.8 ± 0.2 nm).
“Statistical analysis of the diameter distribution of those particles revealed that the mutant protein resulted in particles that had, on average, larger diameters (13.8 Ϯ 0.2 nm versus 17.8 Ϯ 0.3 nm) (Fig. 5C).”
Quote in the paperSubstantial claim - Findingown data
Lipoprotein particles containing mutant apoE4 had a slightly perturbed thermal denaturation profile.
“CD analysis of the lipoprotein particles revealed that the lipoprotein particles that contain the mutant apoE4 had a statistically significant but minor reduction in helical content (Fig. 6A) and also a slightly perturbed thermal denaturation profile (Fig. 6B), which may indicate some minor perturbation because of mutation.”
Quote in the paperNot a substantial claim - Findingown data
Limited proteolysis with elastase, chymotrypsin, and trypsin revealed that the introduction of the L28P mutation further sensitizes apoE4 toward proteolysis.
“Limited proteolysis with elastase, chymotrypsin, and trypsin revealed that the introduction of the L28P mutation further sensitizes apoE4 toward proteolysis.”
Quote in the paperSubstantial claim - Findingown data
Lipoprotein particles containing mutant apoE4 had a statistically significant but minor reduction in helical content.
“CD analysis of the lipoprotein particles revealed that the lipoprotein particles that contain the mutant apoE4 had a statistically significant but minor reduction in helical content (Fig. 6A) and also a slightly perturbed thermal denaturation profile (Fig. 6B), which may indicate some minor perturbation because of mutation.”
Quote in the paperNot a substantial claim - Findingown data
Lipidated apoE4[L28P] resulted in significantly less cell viability compared with lipidated WT apoE4 at both concentrations assayed.
“However, when using the lipidated forms of the proteins and at both concentrations assayed, lipidated apoE4[L28P] resulted in significantly less cell viability compared with lipidated WT apoE4 (Fig. 7B).”
Quote in the paperSubstantial claim - Findingown data
The larger average diameter of apoE4[L28P] particles was primarily due to the presence of several larger-diameter outliers.
“This, however, was primarily due to the presence of several larger-diameter outliers (Fig. 5C, insets).”
Quote in the paperNot a substantial claim - Findingown data
Lipidated apoE4[L28P] at 0.375 M caused a 28% decrease in cell viability.
“More importantly, toxicity (28% decrease in cell viability) was evident even when lipidated apoE4[L28P] was used at the lower concentration of 0.375 M, which is similar to the reported concentration of apoE in human cerebrospinal fluid (0.365-0.395M) (47,48).”
Quote in the paperSubstantial claim - Findingown data
Lipoprotein particle-associated apoE4[L28P] induces ROS formation inside SK-N-SH cells to a much higher degree than wild-type apoE4.
“Our analysis showed that lipoprotein particle-associated apoE4[L28P] was capable to induce ROS formation inside SK-N-SH cells to a much higher degree than WT apoE4 (Fig. 11D).”
- Also stated in: § DISCUSSION · plain
“whereas the lipoprotein-associated apoE4[L28P] increases ROS formation and reduces the viability of SK-N-SH cells.”
Quote in the paperSubstantial claim - Also stated in: § DISCUSSION · plain
- Findingown data
Incubation of SK-N-SH cells with Aβ42 and lipoprotein particles containing apoE4[L28P] did not promote the cellular uptake of Aβ42.
“Incubation of SK-N-SH cells with A42 and lipoprotein particles containing the apoE4[L28P] variant did not promote the cellular uptake of A42.”
Quote in the paperSubstantial claim - Findingown data
Lipid-free apoE4[L28P] induces the intracellular accumulation of amyloid beta 42 in SK-N-SH human neuroblastoma cells and in mouse primary neurons.
“We show here that the lipid-free apoE4[L28P] induces the intracellular accumulation of A42 in SK-N-SH human neuroblastoma cells and mouse primary neurons as well as ROS formation, whereas the lipoprotein-associated apoE4[L28P] increases ROS formation and reduces the viability of SK-N-SH cells.”
Quote in the paperSubstantial claim - Findingown data
Aβ42 accumulation inside the cells was persistent even 24 h post-removal of both Aβ42 and apoE4 from the medium.
“Furthermore, A42 accumulation inside the cells was persistent even 24 h post-removal of both A42 and apoE4 from the medium (Fig. 8, g-i).”
Quote in the paperSubstantial claim - Findingnone given
The L28P apoE4 mutation introduces a proline residue into a highly helical segment of the protein.
“The L28P apoE4 mutation is characterized by the fact that it introduces a proline residue into a highly helical segment of the protein.”
Quote in the paperSubstantial claim - Findingown data
Lipoprotein-associated apoE4[L28P] reduces the viability of SK-N-SH cells.
“We show here that the lipid-free apoE4[L28P] induces the intracellular accumulation of A42 in SK-N-SH human neuroblastoma cells and mouse primary neurons as well as ROS formation, whereas the lipoprotein-associated apoE4[L28P] increases ROS formation and reduces the viability of SK-N-SH cells.”
Quote in the paperSubstantial claim - Findingown data
Lipid-free apoE4[L28P] induces ROS formation.
“We show here that the lipid-free apoE4[L28P] induces the intracellular accumulation of A42 in SK-N-SH human neuroblastoma cells and mouse primary neurons as well as ROS formation, whereas the lipoprotein-associated apoE4[L28P] increases ROS formation and reduces the viability of SK-N-SH cells.”
Quote in the paperSubstantial claim - Findingown data
In primary mouse cortical neurons, apoE4[L28P] but not WT apoE4 induced the intracellular accumulation of Aβ42 peptide.
“Similar to the SK-N-SH cells, the apoE4[L28P] variant, but not WT apoE4, induced the intracellular accumulation of A42 peptide (Fig. 10, a-c).”
Quote in the paperSubstantial claim - Findingown data
No toxicity was evident for lipidated WT apoE4 at 0.375 M.
“No toxicity was evident for lipidated WT apoE4 at that concentration.”
Quote in the paperSubstantial claim - Findingown data
SK-N-SH cells incubated with Aβ42 and physiological concentrations of apoE4[L28P] for 24 h resulted in internalization of the Aβ42 peptide.
“SK-N-SH cells incubated with A42 and physiological concentrations of apoE4[L28P] for 24 h resulted in internalization of the A42 peptide (Fig. 8c).”
Quote in the paperSubstantial claim - Findingown data
There was no Aβ42 internalization in the presence of lipoprotein particles containing WT apoE4.
“Similarly, there was no A42 internalization in the presence of lipoprotein particles containing WT apoE4 (Fig. 9).”
Quote in the paperSubstantial claim - Findingown data
The increase in ROS formation was persistent for at least 24 h after removal of the medium that contained Aβ42 and apoE4[L28P].
“This phenomenon was persistent for at least 24 h after removal of the medium that contained A42 and apoE4[L28P] (Fig. 11B).”
Quote in the paperSubstantial claim - Premisecitation
A naturally occurring point mutation in apoE4, L28P (apoE4 Pittsburgh), was found in a heterozygous state in patients with sporadic LOAD and related controls.
“Screening for apoE variants in patients with sporadic LOAD and related controls revealed a naturally occurring point mutation in apoE4, L28P (denoted as apoE4 Pittsburgh), in a heterozygous state (6,7).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [6] Kamboh, 1999, A novel mutation in the apolipoprotein E gene (APOE*4 Pittsburgh) is associated with the risk of late-onset Alzheimer's disease, Neurosci. Lett source
- cites [7] Scacchi, 2003, Screening of two mutations at exon 3 of the apolipoprotein E gene (sites 28 and 42) in a sample of patients with sporadic late-onset Alzheimer's disease, Neurobiol. Aging source
- Interpretationown data
The loss of the unfolding intermediate for apoE4[L28P] is not due to incomplete equilibration after each addition of GndHCl but due to a destabilized structure.
“The overall shape of the denaturation curve for apoE4[L28P] was unchanged, indicating that the loss of the intermediate state is not due to incomplete equilibration after each addition of GndHCl but due to a destabilized structure.”
Quote in the paperSubstantial claim - Interpretationown data
The increase in solvent-accessible hydrophobic surface could be consistent with exposure of the N-terminal four-helix bundle hydrophobic core because of misfolding.
“The ANS binding analysis suggested that the L28P mutation resulted in an increase of the solvent-accessible hydrophobic surface of apoE4, a finding that could be consistent with exposure of the N-terminal four-helix bundle hydrophobic core because of misfolding (Fig. 2E).”
Quote in the paperSubstantial claim - Interpretationown data
Larger-sized malformed lipoprotein particles may indicate aggregation tendencies because of structural defects brought about by the mutation.
“Such larger-sized malformed lipoprotein particles may indicate aggregation tendencies because of structural defects brought about by the mutation.”
Quote in the paperNot a substantial claim - Interpretationown data
The slower kinetics of DMPC remodeling by apoE4[L28P] suggests possible defects in the ability of the protein to undergo the necessary conformational changes to bind lipids.
“Although apoE4[L28P] was also able to remodel DMCP vesicles, it did so with slower kinetics compared with the WT protein, suggesting possible defects in the ability of the protein to undergo the necessary conformational changes to bind lipids (Fig. 4).”
Quote in the paperSubstantial claim - Interpretationreasoning
Because proline is not the preferred residue for any of the proteases used, the finding is consistent with local or even generalized unfolding that exposes protease-sensitive sites in the variant apoE4.
“Because proline is not the preferred residue for any of the proteases used, this finding is consistent with local or even generalized unfolding that exposes protease-sensitive sites in the variant apoE4.”
Quote in the paperSubstantial claim - Interpretationreasoning
The apparent paradox that two opposite thermodynamic stability changes are associated with the same gain of function can be reconciled by apoE4 being a thermodynamically metastable and structurally plastic protein that relies for its function on its ability to change conformational states, an ability that necessitates an optimized thermodynamic stability.
“This apparent paradox, that two opposite thermodynamic stability changes are associated with the same gain of function, can be reconciled in the context that apoE4 is a thermodynamically metastable and structural plastic protein that relies, for its function, on its ability to change conformational states, an ability that necessitates an optimized thermodynamic stability.”
Quote in the paperSubstantial claim - Interpretationreasoning
The structural integrity of apoE4 is almost certainly an important component of its role in the pathogenesis of late-onset Alzheimer disease.
“The structural integrity of apoE4 is almost certainly an important component of its role in the pathogenesis of LOAD, and analysis of structurally defective apoE4 variants may hold clues regarding the pathogenic mechanisms behind this disease.”
Quote in the paperSubstantial claim- Rests on an assumption: The mechanism by which apoE4 promotes late-onset Alzheimer disease pathogenesis is not clear.
- Rests on an assumption: The differences between the three common apoE isoforms are structural, and these structural differences underlie changes in function that affect disease predisposition.
- Interpretationreasoning
The structural integrity of apoE4 is an important component of its role in AD pathogenesis.
“The structural integrity of apoE4 is an important component of its role in AD pathogenesis.”
Quote in the paperSubstantial claim - Interpretationreasoning
These structural and functional changes underlie the observed added risk for AD development in carriers of apoE4[L28P].
“We propose that these structural and functional changes underlie the observed added risk for AD development in carriers of apoE4 [L28P].”
Quote in the paperSubstantial claim- Rests on an assumption: The structural and functional defects observed in vitro for apoE4[L28P] translate to the increased AD risk in human carriers.
- Interpretationreasoning
The differences among the study of Huber et al. and other studies of apoE4 transgenic mice, including the presence or absence of endogenous mouse apoE and the different cellular expression sites for the apoE transgenes (glia versus neurons), seem to be critical for the development of an Alzheimer disease phenotype in mice.
“Therefore, the number of important differences among the study of Huber et al. (61) and other studies of apoE4 transgenic mice, including the presence or absence of endogenous mouse apoE, which could compensate or mask certain biological effects as well as the different cellular expression sites for the apoE transgenes (glia versus neurons), seem to be critical for the development of an AD pheno”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [61] Huber, 2000, Characterization of transgenic mice expressing apolipoprotein E4(C112R) and apolipoprotein E4(L28P; C112R), Neuroscience source
- Interpretationreasoning
Functional analyses of rare variants can provide additional validation of their association with late-onset Alzheimer disease, even in the absence of their identification from genome-wide association studies.
“Furthermore, functional analyses of rare variants, like the one presented in this study, can provide additional validation of their association with LOAD, even in the absence of their identification from genome-wide association studies.”
Quote in the paperSubstantial claim - Interpretationreasoning
It is possible that apoE4[L28P], regardless of its lipidation status, affects processes that lead to chronic oxidative stress and in that manner contributes to the pathogenesis of Alzheimer disease.
“Therefore, it is possible that apoE4[L28P], regardless of its lipidation status, affects processes that lead to chronic oxidative stress and, in that manner, contributes to the pathogenesis of AD.”
Quote in the paperSubstantial claim - Premisecitation
Transgenic wild-type apoE4 mice lacking endogenous mouse apoE and expressing human apoE transgenes in neurons under the neuron-specific enolase promoter showed impairments in learning a water maze task and in vertical exploratory behavior that increased with age compared with neuron-specific enolase-apoE3 transgenic mice and control non-transgenic mice.
“In contrast, in another study, transgenic WT apoE4 mice lacking endogenous mouse apoE and expressing human apoE transgenes in neurons, under the control of the neuron-specific enolase promoter, showed impairments in learning a water maze task and in vertical exploratory behavior that increased with age compared with neuron-specific enolase-apoE3 transgenic mice and control non-transgenic mice (62)”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [62] Raber, 1998, Isoform-specific effects of human apolipoprotein E on brain function revealed in ApoE knockout mice: increased susceptibility of females, Proc. Natl. Acad. Sci. U.S.A source
- Interpretationreasoning
The findings suggest a molecular basis that may underlie the genetic association of a naturally occurring mutation in apoE4 with the development of late-onset Alzheimer disease.
“Our findings suggest a molecular basis that may underlie the genetic association of a naturally occurring mutation in apoE4 with the development of LOAD.”
Quote in the paperSubstantial claim- Rests on an assumption: The mechanism by which apoE4 promotes late-onset Alzheimer disease pathogenesis is not clear.
- Interpretationreasoning
The common functional properties of apoE4[L28P] and the C-terminal truncated apoE4 support the idea that amyloid beta internalization by neuronal cells is an early event in Alzheimer disease pathogenesis that is exacerbated in the case of the apoE4[L28P] variant.
“The common functional properties of apoE4[L28P] and the C-terminal truncated apoE4 further support the idea that A internalization by neuronal cells is an early event in AD pathogenesis that is exacerbated in the case of the apoE4[L28P] variant.”
Quote in the paperSubstantial claim - Premisecitation
A rare hereditary mutation in apoE4, L28P, has been associated with an increased risk for late-onset Alzheimer disease in patients.
“A rare hereditary mutation in apoE4, L28P, has been associated with an increased risk for LOAD in patients (6,7).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [6] Kamboh, 1999, A novel mutation in the apolipoprotein E gene (APOE*4 Pittsburgh) is associated with the risk of late-onset Alzheimer's disease, Neurosci. Lett source
- cites [7] Scacchi, 2003, Screening of two mutations at exon 3 of the apolipoprotein E gene (sites 28 and 42) in a sample of patients with sporadic late-onset Alzheimer's disease, Neurobiol. Aging source
- Premisecitation
Previous attempts to model the effect of apoE4[L28P] in experimental animals have yielded conflicting results.
“Although the genetic association of apoE4 and, more specifically, apoE4[L28P] with LOAD has been established, previous attempts to model this effect in experimental animals have yielded conflicting results.”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [61] Huber, 2000, Characterization of transgenic mice expressing apolipoprotein E4(C112R) and apolipoprotein E4(L28P; C112R), Neuroscience source
- cites [62] Raber, 1998, Isoform-specific effects of human apolipoprotein E on brain function revealed in ApoE knockout mice: increased susceptibility of females, Proc. Natl. Acad. Sci. U.S.A source
- Interpretationown data
This finding links the functional properties of apoE4[L28P] with a previously reported property of proteolytic fragments of apoE4 that may be associated with AD pathogenesis.
“This finding links the functional properties of this apoE4 variant with a property reported previously (intracellular accumulation of A42) of proteolytic fragments of apoE4 that may be associated with AD pathogenesis.”
Quote in the paperSubstantial claim - Interpretationown data
These findings suggest that lipoproteins containing apoE4[L28P] may negatively affect neuronal cell viability.
“These findings suggest that lipoproteins containing apoE4[L28P] may negatively affect neuronal cell viability.”
Quote in the paperSubstantial claim
- Classified as probably not a substantial claim. 15
- May combine two claims. 28
Classified as probably not a substantial claim.
PremisecitationApoE4 has been associated with a variety of neuropathological processes, including Alzheimer disease (AD).
“ApoE4 has been associated with a variety of neuropathological processes, including Alzheimer disease (AD) (2).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [2] Mahley, 2006, Apolipoprotein E4: a causative factor and therapeutic target in neuropathology, including Alzheimer's disease, Proc. Natl. Acad. Sci. U.S.A source
Classified as probably not a substantial claim. May combine two claims.
PremisecitationAβ accumulation occurs prior to extracellular amyloid formation, has been implicated in the onset of early cognitive alterations, and may contribute to the pathological cascade of events that leads to neuronal dysfunction and, eventually, to AD.
“A accumulation occurs prior to extracellular amyloid formation, has been implicated in the onset of early cognitive alterations, and may contribute to the pathological cascade of events that leads to neuronal dysfunction and, eventually, to AD (12,13).”
Quote in the paperSubstantial claim1 of 2 sources checkedMay combine two claims.
PremisecitationNot all apoE4 forms found in the brains of AD patients are equally bioactive, and specific apoE4 forms may be involved in processes associated with AD pathogenesis.
“These and other findings suggest that not all apoE4 forms found in the brains of AD patients are equally bioactive and that specific apoE4 forms may be involved in processes associated with AD pathogenesis (10, 14 -17).”
Quote in the paperSubstantial claim5 of 5 sources checked- cites [10] Dafnis, 2010, An apolipoprotein E4 fragment can promote intracellular accumulation of amyloid peptide β 42, J. Neurochem source
- cites [14] Harris, 2003, Carboxyl-terminal-truncated apolipoprotein E4 causes Alzheimer's disease-like neurodegeneration and behavioral deficits in transgenic mice, Proc. Natl. Acad. Sci. U.S.A source
- cites [15] Brecht, 2004, Neuron-specific apolipoprotein e4 proteolysis is associated with increased Tau phosphorylation in brains of transgenic mice, J. Neurosci source
- cites [16] Chang, 2005, Lipid- and receptor-binding regions of apolipoprotein E4 fragments act in concert to cause mitochondrial dysfunction and neurotoxicity, Proc. Natl. Acad. Sci. U.S.A source
- cites [17] Dafnis, 2012, An apolipoprotein E4 fragment affects matrix metalloproteinase 9, tissue inhibitor of metalloproteinase 1 and cytokine levels in brain cell lines, Neuroscience source
May combine two claims.
PremisecitationA specific apoE4 fragment can promote the uptake and intracellular accumulation of Aβ42 and lead to increased formation of reactive oxygen species in neuroblastoma cells.
“We have demonstrated previously that a specific apoE4 fragment can promote the uptake and intracellular accumulation of A42 and lead to increased formation of reactive oxygen species in neuroblastoma cells, two events that are considered to be early events in the pathogenesis process of AD (10).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [10] Dafnis, 2010, An apolipoprotein E4 fragment can promote intracellular accumulation of amyloid peptide β 42, J. Neurochem source
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationOxidative stress is one of the earliest events in Alzheimer disease and plays important roles in the onset and progression of the disease, and this stress has been suggested to be chronic in neurons.
“Oxidative stress has also been proposed to be one of the earliest events in AD that plays important roles in the onset and progression of the disease.”
- Also stated in: § DISCUSSION · hedged
“This stress has been suggested to be chronic in neurons (56).”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [56] Nunomura, 2006, Involvement of oxidative stress in Alzheimer disease, J. Neuropathol. Exp. Neurol source
- Also stated in: § DISCUSSION · hedged
May combine two claims.
PremisecitationApoE4[Δ(166-299)] is largely thermodynamically stabilized, whereas apoE4[L28P] is destabilized.
“ApoE4[(⌬(166 -299)] is largely thermodynamically stabilized (25), whereas apoE4[L28P] is destabilized.”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [25] Chroni, 2008, Biophysical analysis of progressive C-terminal truncations of human apolipoprotein E4: insights into secondary structure and unfolding properties, Biochemistry source
The Results sections on chemical and thermal unfolding (page unavailable) show that apoE4[Δ(166–299)] loses an unfolding intermediate and unfolds more cooperatively, supporting a stabilization in those respects. But its melting temperature returns to approximately the wild-type value, and the Discussion notes possible destabilization of the N-terminal domain. The citation is attached to the truncation claim, not the separate statement about apoE4[L28P]. (LLM, conf=0.85)
Experimental — accuracy not yet measured
May combine two claims.
InterpretationcitationThe L28P mutation induces serious folding defects on the protein, leading to a functional phenotype demonstrated previously with a heavily truncated apoE4 proteolytic fragment similar to apoE4 fragments proposed to appear early in the pathogenetic process of Alzheimer disease.
“The mutation induces serious folding defects on the protein, leading to a functional phenotype demonstrated previously with a heavily truncated apoE4 proteolytic fragment similar to apoE4 fragments proposed to appear early in the pathogenetic process of AD (15).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [15] Brecht, 2004, Neuron-specific apolipoprotein e4 proteolysis is associated with increased Tau phosphorylation in brains of transgenic mice, J. Neurosci source
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
- Rests on an assumption: The mechanism by which apoE4 promotes late-onset Alzheimer disease pathogenesis is not clear.
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationAccumulation of amyloid beta, the majority of which is amyloid beta 42, occurs prior to extracellular amyloid formation, has been implicated in the onset of early cognitive alterations, and may contribute to the pathological cascade of events that lead to neuronal dysfunction and, eventually, to Alzheimer disease.
“Accumulation of A, the majority of which is A42, occurs prior to extracellular amyloid formation, has been implicated in the onset of early cognitive alterations, and may contribute to the pathological cascade of events that lead to neuronal dysfunction and, eventually, to AD (12,13).”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [12] LaFerla, 2007, Intracellular amyloid-β in Alzheimer's disease, Nat. Rev. Neurosci source
- cites [13] Bayer, 2008, Review on the APP/PS1KI mouse model: intraneuronal Aβ accumulation triggers axonopathy, neuron loss and working memory impairment, Genes Brain Behav source
Split into 2 atoms — 1 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
Classified as probably not a substantial claim.
PremisecitationAmyloid beta is one of the factors that contribute to oxidative stress in neurons.
“A has been shown to be one of the factors that contribute to oxidative stress in neurons (57,58).”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [57] Smith, 2007, The redox chemistry of the Alzheimer's disease amyloid β peptide, Biochim. Biophys. Acta source
- cites [58] Butterfield, 2013, Amyloid β-peptide (1–42)-induced oxidative stress in Alzheimer disease: importance in disease pathogenesis and progression, Antioxid. Redox Signal source
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationROS, which are considered markers of oxidative stress, are generated in the cytoplasm of neurons and can cause damage to key cellular components, including DNA, proteins, and lipids, leading to neuronal dysfunction and death.
“It has been proposed that ROS, which are considered markers of oxidative stress, are generated in the cytoplasm of neurons and can cause damage to key cellular components, including DNA, proteins, and lipids, leading to neuronal dysfunction and death (56, 59, 60).”
Quote in the paperNot a substantial claim2 of 3 sources checked- cites [56] Nunomura, 2006, Involvement of oxidative stress in Alzheimer disease, J. Neuropathol. Exp. Neurol source
The Introduction reports oxidation of nucleic acids, proteins, and lipids in early Alzheimer disease, and the Conclusion describes a model in which increased oxidative stress causes neuronal death. Our copy does not establish that ROS are generated in neuronal cytoplasm or identify ROS themselves as markers of oxidative stress; its cytoplasmic observation concerns an oxidized nucleoside, 8OHG. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [59] Dasuri, 2013, Oxidative stress, neurodegeneration, and the balance of protein degradation and protein synthesis, Free. Radic. Biol. Med source
- cites [60] Yan, 2013, Mitochondrial defects and oxidative stress in Alzheimer disease and Parkinson disease, Free. Radic. Biol. Med source
The Introduction says excess ROS can damage nucleic acids, enzymes, and lipids and ultimately cause neuronal loss or cell death. It does not identify the neuronal cytoplasm as the site where ROS are generated; instead, it describes mitochondria as the major sites of cellular ROS generation. It also describes ROS as contributors to oxidative stress rather than explicitly as markers of it. (LLM, conf=0.86)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationRare variants in amyloid beta precursor protein, presenilin 1, and presenilin 2 increased the risk for Alzheimer disease in late-onset Alzheimer disease families.
“A characteristic example involves a mutation screening study that showed that rare variants in amyloid  precursor protein, presenilin 1, and presenilin 2 increased the risk for AD in LOAD families, suggesting that rare variants in genes associated with AD pathogenesis could explain a significant proportion of genetic heritability of AD, which is not detected by genomewide association studies (53)”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [53] Cruchaga, 2012, Rare variants in APP, PSEN1 and PSEN2 increase risk for AD in late-onset Alzheimer's disease families, PLoS ONE source
May combine two claims.
Findingown dataApoE4[L28P] was less stable toward thermal denaturation, having a lower melting temperature midpoint (Tm) and a calculated enthalpy for the transition of 9.1 kcal/mol less than WT apoE4.
“Furthermore, apoE4[L28P] was less stable toward thermal denaturation, having a lower melting temperature midpoint (T m ) and a calcu-lated enthalpy for the transition of 9.1 kcal/mol less than WT apoE4 (Fig. 2B).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataApoE4[L28P] demonstrated a single transition with a loss of the unfolding intermediate and a shift to lower GndHCl concentrations.
“When treated with GndHCl using the same approach, apoE4[L28P] demonstrated a single transition with a loss of the unfolding intermediate and a shift to lower GndHCl concentrations (Fig. 2C).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataApoE4[L28P] was able to remodel DMPC vesicles but did so with slower kinetics compared with WT apoE4.
“Although apoE4[L28P] was also able to remodel DMCP vesicles, it did so with slower kinetics compared with the WT protein, suggesting possible defects in the ability of the protein to undergo the necessary conformational changes to bind lipids (Fig. 4).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataBoth WT and mutant apoE4 in their lipid-free form displayed no apparent toxicity to the cells at the low concentration used but resulted in a similar reduced cell viability when used at the higher concentration.
“Both WT and mutant apoE4 in their lipid-free form displayed no apparent toxicity to the cells at the low concentration used but resulted in a similar reduced cell viability when used at the higher concentration (Fig. 7A).”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataThe increase in ROS formation was completely dependent on the uptake of Aβ42 by cells because there was no enhanced ROS formation in SK-N-SH cells incubated with lipid-free WT apoE4 or apoE4[L28P] in the absence of Aβ42.
“The increase in ROS formation was completely dependent on the uptake of A42 by cells because there was no enhanced ROS formation in SK-N-SH cells incubated with lipid-free WT apoE4 or apoE4[L28P] in the absence of A42 (Fig. 11C).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataNo Aβ42 uptake was evident when WT apoE4 was used or in the absence of apoE4.
“No A42 uptake was evident when WT apoE4 was used or in the absence of apoE4 (Fig. 8, a and b).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataThe structural perturbations caused by the L28P mutation are not restricted to the local area but are transmitted to the folding integrity of the whole N-terminal domain of apoE4, indicating that the mutation interferes with key folding pathways of the protein.
“Our findings, however, suggest that the structural perturbations because of the mutation are not only restricted to the local area but are, instead, transmitted to the folding integrity of the whole N-terminal domain of apoE4, suggesting that the mutation interferes with key folding pathways of the protein.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataIncubation of SK-N-SH cells with Aβ42 and physiological concentrations of apoE4[L28P] for 24 h resulted in a significant increase of intracellular ROS, whereas WT apoE4 had no such effect.
“Incubation of SK-N-SH cells with A42 and physiological concentrations of apoE4[L28P] for 24 h resulted in a significant increase of intracellular ROS, whereas WT apoE4 had no such effect (Fig. 11A).”
Quote in the paperSubstantial claimMay combine two claims.
FindingreasoningBoth the hereditary mutant apoE4[L28P] and apoE4[Δ(166-299)] have significant structural perturbations that could affect function, although apoE4[L28P] has only a single amino acid substitution whereas apoE4[Δ(166-299)] is missing the entire C-terminal domain.
“Interestingly, both the hereditary mutant apoE4[L28P] and apoE4[(⌬(166 -299)] have significant structural perturbations that could affect function, although the one variant only has a single amino acid substitution, whereas the other is missing the entire C-terminal domain.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataThe apoE4[L28P] mutant protein can still interact with lipids, but both the kinetics and the final products of the interaction are altered.
“Although the mutant protein can still interact with lipids, both the kinetics and final products are altered.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationApoE4 is a major genetic risk factor for late-onset Alzheimer disease (LOAD) because 40% of all patients have at least one ε4 allele.
“ApoE4 is a major genetic risk factor for late-onset AD (LOAD) because 40% of all patients have at least one ⑀4 allele (4).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [4] Corder, 1993, Gene dose of apolipoprotein E type 4 allele and the risk of Alzheimer's disease in late onset families, Science source
May combine two claims.
PremisecitationBeing homozygous or heterozygous for the ε4 allele increases the risk of LOAD 4-fold and lowers the age of onset of the disease.
“Being homozygous or heterozygous for the ⑀4 allele increases the risk of LOAD 4-fold and lowers the age of onset of the disease (4,5).”
Quote in the paperSubstantial claim0 of 2 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationThe 42-amino acid Aβ (Aβ42) constitutes the majority of intraneuronal Aβ.
“Furthermore, the 42-amino acid A (A42) constitutes the majority of intraneuronal A (12).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [12] LaFerla, 2007, Intracellular amyloid-β in Alzheimer's disease, Nat. Rev. Neurosci source
May combine two claims.
PremisecitationCarriers of the apoE4[L28P] mutant are at a substantially higher risk of developing LOAD, and this risk remains significant even after adjusting for the known effect of apoE4.
“A rare apoE4 mutant, apoE4[L28P] Pittsburgh, burdens carriers with an added risk for late-onset AD and may be a useful tool for gaining insights into the role of apoE4 in disease pathogenesis.”
- Also stated in: § Abstract · plain
“Carriers of the apoE4[L28P] mutant are at a substantially higher risk of developing LOAD, and this risk remains significant even after adjusting for the known effect of apoE4 (6,7).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [6] Kamboh, 1999, A novel mutation in the apolipoprotein E gene (APOE*4 Pittsburgh) is associated with the risk of late-onset Alzheimer's disease, Neurosci. Lett source
- cites [7] Scacchi, 2003, Screening of two mutations at exon 3 of the apolipoprotein E gene (sites 28 and 42) in a sample of patients with sporadic late-onset Alzheimer's disease, Neurobiol. Aging source
- Also stated in: § Abstract · plain
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationX-ray crystallographic analysis of the lipid-free apoE amino-terminal domain (residues 1-191) showed a 4 helix bundle spanning residues 24-164 that segregates the hydrophobic core of the four helices from the solvent.
“X-ray crystallographic analysis of the lipid-free apoE amino-terminal domain (residues 1-191) showed a 4 helix bundle spanning residues 24 -164 that segregates the hydrophobic core of the four helices from the solvent (23).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [23] Wilson, 1991, Three-dimensional structure of the LDL receptor-binding domain of human apolipoprotein E, Science source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationLipid-free apoE is folded into two seemingly independent structural domains that can be separated after digestion with thrombin, generating an N-terminal, 22-kDa fragment (residues 1-191) and a C-terminal, 10-kDa fragment (residues 216-299).
“Lipid-free apoE is folded into two seemingly independent structural domains that can be separated after digestion with thrombin, generating an N-terminal, 22-kDa fragment (residues 1-191) and a C-terminal, 10-kDa fragment (residues 216 -299) (21,22).”
Quote in the paperNot a substantial claim0 of 2 sources checkedClassified as probably not a substantial claim.
PremisecitationUnfolding of the N-terminal domain constitutes a necessary conformational change for lipid binding and apoE function.
“Biophysical and computational analyses suggest that unfolding of the N-terminal domain constitutes a necessary conformational change for lipid binding and apoE function (19).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [19] Hatters, 2006, Apolipoprotein E structure: insights into function, Trends Biochem. Sci source
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationApoE is highly helical, with a labile tertiary structure that can assume structures characteristic of a molten globule.
“ApoE is highly helical, with a labile tertiary structure that can assume structures characteristic of a molten globule (18).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [18] Morrow, 2002, Apolipoprotein E4 forms a molten globule: a potential basis for its association with disease, J. Biol. Chem source
May combine two claims.
Interpretationown dataThe helicity loss in apoE4[L28P] greatly exceeds the expected loss of helicity because of local structure disruption as a result of the mutation, suggesting a more generalized unfolding.
“This amount of helicity loss greatly exceeds the expected loss of helicity because of local structure disruption as a result of the mutation and suggests a more generalized unfolding.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataMALDI-TOF analysis confirmed the expected molecular masses: 34585.5 ± 30.9 Da for WT apoE4 and 34570.3 ± 30.4 Da for apoE4[L28P].
“MALDI-TOF analysis of the samples confirmed the purity of our preparations as well as the expected molecular mass (34585.5 Ϯ 30.9 Da for WT apoE4 and 34570.3Ϯ 30.4 Da for apoE4[L28P]) (Fig. 1, D and E).”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataRecombinant WT apoE4 and apoE4[L28P] were produced and purified to at least 96% purity.
“Both proteins were at least 96% pure, as judged by SDS-PAGE analysis (Fig. 1C).”
- Also stated in: § EXPERIMENTAL PROCEDURES · hedged
“The refolded proteins were at least 96% pure, as estimated by SDS-PAGE.”
Quote in the paperNot a substantial claim- Also stated in: § EXPERIMENTAL PROCEDURES · hedged
May combine two claims.
Interpretationown dataIntroduction of the L28P mutation into apoE4 has serious repercussions for the structure and folding of the protein and leads to thermodynamic destabilization and, possibly, local or generalized misfolding.
“Overall, biophysical analysis indicates that introduction of the L28P mutation into apoE4 has serious repercussions for the structure and folding of the protein and leads to thermodynamic destabilization and, possibly, local or generalized misfolding.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataThe apoE4[L28P] variant can induce an increased ROS burden inside SK-N-SH cells in lipid-free form after induction of cellular amyloid beta 42 uptake, or in lipidated form independently of amyloid beta 42.
“induce an increased ROS burden inside SK-N-SH cells in lipidfree form after induction of cellular A42 uptake or in lipidated form independently of A42.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataThe L28P mutation leads to significant structural and conformational perturbations in apoE4 and can induce functional defects associated with neuronal Aβ42 accumulation and oxidative stress.
“Overall, our findings suggest that the L28P mutation leads to significant structural and conforma-tional perturbations in apoE4 and can induce functional defects associated with neuronal A42 accumulation and oxidative stress.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S2 (checkable), S4 (based).
Interpretationnone givenThe study of disease-associated rare mutations can be a powerful tool for understanding the involvement of particular gene products in disease pathogenesis, because the mutation may often exacerbate pre-existing functional roles in the pathophysiological process of disease progression.
“The study of disease-associated rare mutations can be a powerful tool for understanding the involvement of particular gene products on disease pathogenesis because the mutation may often exacerbate pre-existing functional roles in the pathophysiological process of disease progression.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationTransgenic mice expressing apoE4[L28P] and wild-type apoE4 under the glial fibrillary acidic protein promoter did not differ from non-transgenic mice in cognitive tests and showed no change in immunohistological and biochemical brain protein analyses.
“Neither transgenic mouse differed from non-transgenic mice in cognitive tests, nor did they show any change in immunohistological and biochemical brain protein analyses, a finding that is in conflict with the established association of apoE4 and AD in humans (61).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [61] Huber, 2000, Characterization of transgenic mice expressing apolipoprotein E4(C112R) and apolipoprotein E4(L28P; C112R), Neuroscience source
May combine two claims.
Interpretationown dataApoE4[L28P] displays folding defects and aberrant functions associated with AD pathogenesis.
“ApoE4[L28P] displays folding defects and aberrant functions associated with AD pathogenesis.”
Quote in the paperSubstantial claim
The paper relies on this without support.
The structural and functional defects observed in vitro for apoE4[L28P] translate to the increased AD risk in human carriers.
“We propose that these structural and functional changes underlie the observed added risk for AD development in carriers of apoE4 [L28P].”
The paper relies on this without support.
The SK-N-SH neuroblastoma cell line and primary mouse cortical neurons are valid models for human neurons in the context of AD pathogenesis.
“To test whether the functional properties of the lipid-free apoE4[L28P] variant extend to a more physiologically relevant cellular system, we incubated primary mouse cortical neurons with A42 and either WT apoE4 or apoE4[L28P] (Fig. 10).”
The paper relies on this without support.
The observed in vitro structural perturbations of apoE4[L28P] are the cause of its aberrant functions, rather than a correlated phenomenon.
“We propose that these structural and functional changes underlie the observed added risk for AD development in carriers of apoE4 [L28P].”
The paper relies on this without support.
The mechanism by which apoE4 promotes late-onset Alzheimer disease pathogenesis is not clear.
“the mechanism by which a particular apoE isoform, apoE4, can promote LOAD pathogenesis is not clear.”
The paper relies on this without support.
The differences between the three common apoE isoforms are structural, and these structural differences underlie changes in function that affect disease predisposition.
“This may be very relevant in the case of apoE because the differences between the three common apoE isoforms have been hypothesized extensively to be structural, and these exact differences in structural properties are presumed to underlie changes in function that affect disease predisposition.”
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The Apoε4-Freiberg genotype has been previously studied with Alzheimer's disease.
“This genotype has been previously studied with Alzheimer’s disease [38,50].”
From Spectrum and Prevalence of Rare APOE Variants and Their Association with Familial Dysbetalipoproteinemia (2024) · cites this paper as [50]
The paper’s introduction (page unavailable) reports that apoE4 and its L28P variant have been studied in relation to late-onset Alzheimer’s disease. It identifies L28P as “apoE4 Pittsburgh”; our copy does not identify or discuss an Apoε4-Freiberg genotype, so it does not establish that the cited research concerned that specific genotype. (LLM, conf=0.76)
Experimental — accuracy not yet measuredAPOE*4 is associated with increased risk and earlier age-at-onset of Alzheimer's disease, while APOE*2 is associated with decreased risk and later age-at-onset compared to APOE*3.
“of which APOE*4 is associated with an increased risk and earlier age-at-onset (AAO) of Alzheimer’s disease (AD), while APOE*2 is associated with decreased risk and later AAO of AD as compared to the wild type APOE*3 [2–6]”
From Investigation of the independent role of a rare APOE variant (L28P; APOE*4Pittsburgh) in late-onset Alzheimer disease (2023) · cites this paper as [2]
The passage labeled Abstract (page unavailable) says that carrying APOE*4 increases the risk of late-onset Alzheimer’s disease and lowers its age of onset. It identifies APOE*2 and APOE*3 as isoforms but does not say that APOE*2 decreases risk or delays onset, or explicitly make APOE*3 the comparator for those associations. (LLM, conf=0.88)
Experimental — accuracy not yet measuredANS changes its fluorescence properties when interacting with hydrophobic sites on apoE.
“we used the hydrophobic reporter probe ANS, which changes its fluorescence properties when interacting with hydrophobic sites on apoE (18)(19)(20).”
From Thermodynamic destabilization and aggregation propensity as the mechanism behind the association of apoE3 mutants and lipoprotein glomerulopathy (2018) · cites this paper as [19]
Our findings appear to contrast with previous work reporting that L28P destabilizes ApoE4 in studies using purified recombinant protein.
“Our findings appear to contrast with previous work by 58,59 ,who reported that L28P destabilizes ApoE4 in studies using purified recombinant protein.”
From Utilizing a cell culture based novel cellular thermal shift assay to understand the isoform-dependent thermal stability of ApoE variants (2026) · cites this paper as [58]
Studies have reported that APOE4 Freiburg/Pittsburgh (Leu28Pro, Cys112Arg) was structurally unstable and was associated with a higher risk of developing AD than APOE4 (Cys112Arg).
“Studies have reported that APOE4 Freiburg/Pittsburgh (Leu28Pro, Cys112Arg) was structurally unstable and was associated with a higher risk of developing AD than APOE4 (Cys112Arg)110, 111).”
From Impact of Apolipoprotein E Variants: A Review of Naturally Occurring Variants and Clinical Features (2025) · cites this paper as [110]
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<i>TREM2</i> Variants in Alzheimer's Disease
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The role of apolipoprotein E in Alzheimer's disease
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Self-citation
- Authors
- Argyri, L., Dafnis, I., Theodossiou, T. A., Gantz, D., Stratikos, E., & Chroni, A.
- Affiliations
- Institute of Biosciences & Applications (GR)
- Boston University (US)
- National Centre of Scientific Research "Demokritos" (GR)
- Corresponding author
- Stratikos, Efstratios
- Chroni, Angeliki
- Venue
- Journal of Biological Chemistry
- Publisher
- Elsevier BV
- Published
- 2014-05
- Volume
- 289
- Issue
- 18
- Pages
- 12931-12945
- ISSN
- 0021-9258 (ISSN-L)
- PMC
- PMC4007480
- OpenAlex
- W2025439958
- Cited by
- 30
- References
- 61
- Citations by year
- 2026: 1 · 2025: 3 · 2024: 4 · 2022: 2 · 2021: 4 · 2020: 2 · 2019: 3 · 2018: 4 · 2017: 1 · 2016: 3 · 2015: 1 · 2014: 2
- FWCI
- 1.56
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Journal of Biological Chemistry (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- European Molecular Biology Laboratory
- Topics
- Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
- Health Sciences › Medicine › Psychiatry and Mental health › Dementia and Cognitive Impairment Research
- Life Sciences › Neuroscience › Neurology › Neuroinflammation and Neurodegeneration Mechanisms
- Keywords
- APOE ε4, late-onset Alzheimer's disease, reactive oxygen species, oxidative stress, protein thermodynamic stability, lipoprotein particles, neurotoxicity, genetic susceptibility
- MeSH terms
- Alzheimer Disease, Anilino Naphthalenesulfonates, Animals, Cells, Cultured, Circular Dichroism, Dimyristoylphosphatidylcholine, Humans, Lipoproteins, Membrane Lipids, Mice, Inbred C57BL, Microscopy, Electron, Models, Molecular, Mutation, Peptide Fragments, Protein Binding, Risk Factors, Spectrometry, Fluorescence, Thermodynamics, Amyloid beta-Peptides, Protein Structure, Secondary, Protein Folding, Microscopy, Confocal, Amino Acid Substitution, Cell Line, Tumor, Mice, Apolipoprotein E4
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Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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