Rapid and Accurate Haplotype Phasing and Missing-Data Inference for Whole-Genome Association Studies By Use of Localized Haplotype Clustering

Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls

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Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population.

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A Comparison of Phasing Algorithms for Trios and Unrelated Individuals

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Efficient multilocus association testing for whole genome association studies using localized haplotype clustering

Browning, B. L., & Browning, S. R. (2007) · Genetic Epidemiology · doi:10.1002/gepi.20216 · Cited by 162 · cited 6×

Global Genetic Diversity, Introgression, and Evolutionary Adaptation of Indicine Cattle Revealed by Whole Genome Sequencing

Chen, N., Xia, X., Hanif, Q., Zhang, F., Dang, R., Huang, B., Lyu, Y., Luo, X., Zhang, H., Yan, H., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-43626-z · Cited by 83

Genome-wide association analysis for heat tolerance at flowering detected a large set of genes involved in adaptation to thermal and other stresses

Lafarge, T., Bueno, C., Frouin, J., Jacquin, L., Courtois, B., & Ahmadi, N. (2017) · PLOS ONE · doi:10.1371/journal.pone.0171254 · Cited by 81

Demography and Rapid Local Adaptation Shape Creole Cattle Genome Diversity in the Tropics

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TWAS results are complementary to and less affected by linkage disequilibrium than GWAS

Li, D., Liu, Q., & Schnable, P. S. (2021) · Plant Physiology · doi:10.1093/plphys/kiab161 · Cited by 71

Genome‐wide analyses of aggressiveness in attention‐deficit hyperactivity disorder

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Bipolar Disorder is associated with the rs6971 polymorphism in the gene encoding 18 kDa Translocator Protein (TSPO)

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Genome-wide association study of 23,500 individuals identifies 7 loci associated with brain ventricular volume

Vojinovic, D., Adams, H. H., Jian, X., Yang, Q., Smith, A. V., Bis, J. C., Teumer, A., Scholz, M., Armstrong, N. J., Hofer, E., et al. (2018) · Nature Communications · doi:10.1038/s41467-018-06234-w · Cited by 52

Haplotype-based inference of recent effective population size in modern and ancient DNA samples

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Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment

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Genome-Wide Analysis Reveals the Effects of Artificial Selection on Production and Meat Quality Traits in Qinchuan Cattle

Mei, C., Wang, H., Liao, Q., Khan, R., Raza, S. H. A., Zhao, C., Wang, H., Cheng, G., Tian, W., Li, Y., et al. (2019) · Genomics · doi:10.1016/j.ygeno.2018.09.021 · Cited by 45

Deciphering the Patterns of Genetic Admixture and Diversity in Southern European Cattle Using Genome-Wide SNPs

Upadhyay, M., Bortoluzzi, C., Barbato, M., Ajmone‐Marsan, P., Colli, L., Ginja, C., Sonstegard, T. S., Bosse, M., Lenstra, J. A., Groenen, M. A. M., et al. (2019) · Evolutionary Applications · doi:10.1111/eva.12770 · Cited by 45

Genome-Wide Association Analysis Reveals QTL and Candidate Mutations Involved in White Spotting in Cattle

Jivanji, S., Worth, G., Lopdell, T. J., Yeates, A., Couldrey, C., Reynolds, E., Tiplady, K., McNaughton, L., Johnson, T. J. J., Davis, S. R., et al. (2019) · Genetics Selection Evolution · doi:10.1186/s12711-019-0506-2 · Cited by 41

Evolutionary history of modern Samoans

Harris, D. N., Kessler, M. D., Shetty, A. C., Weeks, D. E., Minster, R. L., Browning, S., Cochrane, E. E., Deka, R., Hawley, N. L., Reupena, M. S., et al. (2020) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1913157117 · Cited by 41

MaLAdapt Reveals Novel Targets of Adaptive Introgression From Neanderthals and Denisovans in Worldwide Human Populations

Zhang, X., Kim, B., Singh, A., Sankararaman, S., Durvasula, A., & Lohmueller, K. E. (2023) · Molecular Biology and Evolution · doi:10.1093/molbev/msad001 · Cited by 29

Identification of Candidate Signature Genes and Key Regulators Associated With Trypanotolerance in the Sheko Breed

Mekonnen, Y. A., Gültas, M., Effa, K., Hanotte, O., & Schmitt, A. O. (2019) · Frontiers in Genetics · doi:10.3389/fgene.2019.01095 · Cited by 37

Strong effects of environmental factors on prevalence and course of major depressive disorder are not moderated by 5-HTTLPR polymorphisms in a large Dutch sample

Peyrot, W. J., Middeldorp, C. M., Jansen, R., Smit, J. H., de Geus, E. J. C., Hottenga, J.-J., Willemsen, G., Vink, J. M., Virding, S., Barragan, I., et al. (2013) · Journal of Affective Disorders · doi:10.1016/j.jad.2012.08.044 · Cited by 31

Association of SPI1 haplotypes with altered SPI1 gene expression and Alzheimer’s disease risk

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Genetic studies of plasma analytes identify novel potential biomarkers for several complex traits

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The fine-scale genetic structure and evolution of the Japanese population

Takeuchi, F., Katsuya, T., Kimura, R., Nabika, T., Isomura, M., Ohkubo, T., Tabara, Y., Yamamoto, K., Yokota, M., Liu, X., et al. (2017) · PLOS ONE · doi:10.1371/journal.pone.0185487 · Cited by 28

Exploring the Genomes of East African Indicine Cattle Breeds Reveals Signature of Selection for Tropical Environmental Adaptation Traits

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Using blood transcriptome analysis for Alzheimer's disease diagnosis and patient stratification

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Evolution of the Pygmy Phenotype: Evidence of Positive Selection from Genome-wide Scans in African, Asian, and Melanesian Pygmies

Migliano, A. B., Romero, I. G., Metspalu, M., Leavesley, M., Pagani, L., Antao, T., Huang, D.-W., Sherman, B. T., Siddle, K., Scholes, C., et al. (2013) · Human Biology · doi:10.1353/hub.2013.a530634 · Cited by 23

Standing variation rather than recent adaptive introgression probably underlies differentiation of the texanus subspecies of Helianthus annuus

Owens, G. L., Todesco, M., Bercovich, N., Légaré, J., Mitchell, N., Whitney, K. D., & Rieseberg, L. H. (2021) · Molecular Ecology · doi:10.1111/mec.16008 · Cited by 20

The history and geographic distribution of a KCNQ1 atrial fibrillation risk allele

Hateley, S., Lopez-Izquierdo, A., Jou, C. J., Cho, S., Schraiber, J. G., Song, S., Maguire, C. T., Torres, N., Riedel, M., Bowles, N. E., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-26741-7 · Cited by 20

Genetic affinities of the Jewish populations of India

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A general framework for integrative analysis of incomplete multiomics data

Lin, D., Zeng, D., & Couper, D. (2020) · Genetic Epidemiology · doi:10.1002/gepi.22328 · Cited by 16

Whole genome insights into genetic diversity, introgression, and adaptation of Yunnan indigenous cattle of Southwestern China

Guan, X., Xiang, W., Qu, K., Ahmed, Z., Liu, J., Cai, M., Zhang, J., Chen, N., Lei, C., & Huang, B. (2025) · BMC Genomics · doi:10.1186/s12864-024-11033-3 · Cited by 10

A missense mutation in RRM1 contributes to animal tameness

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