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jModelTest: Phylogenetic Model Averaging
Open accessAbstract
jModelTest is a new program for the statistical selection of models of nucleotide substitution based on "Phyml" (Guindon and Gascuel 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696-704.). It implements 5 different selection strategies, including "hierarchical and dynamical likelihood ratio tests," the "Akaike information criterion," the "Bayesian information criterion," and a "decision-theoretic performance-based" approach. This program also calculates the relative importance and model-averaged estimates of substitution parameters, including a model-averaged estimate of the phylogeny. jModelTest is written in Java and runs under Mac OSX, Windows, and Unix systems with a Java Runtime Environment installed. The program, including documentation, can be freely downloaded from the software section at http://darwin.uvigo.es.
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Metadata
- Authors
- Posada, D.
- Venue
- Molecular Biology and Evolution
- Publisher
- Oxford University Press (OUP)
- Published
- 2008-04-03
- Volume
- 25
- Issue
- 7
- Pages
- 1253-1256
- ISSN
- 0737-4038 (ISSN-L)
- 1537-1719
- OpenAlex
- W2120611093
- Cited by
- 10,499
- References
- 7
- FWCI
- 151.25
- Type
- journal article
- Language
- en
- Open access
- bronze
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