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Triple tandem trimer immunogens for HIV-1 and influenza nucleic acid-based vaccines
Open accessPreprint — published as 10.1038/s41541-024-00862-8 · Paper page
Abstract
Recombinant native-like HIV-1 envelope glycoprotein (Env) trimers are used in candidate vaccines aimed at inducing broadly neutralizing antibodies. While state-of-the-art SOSIP or single-chain Env designs can be expressed as native-like trimers, undesired monomers, dimers and malformed trimers that elicit non-neutralizing antibodies are also formed, implying that these designs could benefit from further modifications for gene-based vaccination approaches. Here, we describe the triple tandem trimer (TTT) design in which three Env protomers are genetically linked in a single open reading frame and express as native-like trimers. Viral vectored Env TTT induced similar neutralization titers but with a higher proportion of trimer-specific responses. The TTT design was also applied to generate influenza hemagglutinin (HA) trimers without the need for trimerization domains. Additionally, we used TTT to generate well-folded chimeric Env and HA trimers that harbor protomers from three different strains. In summary, the TTT design is a useful platform for the design of HIV-1 Env and influenza HA immunogens for a multitude of vaccination strategies.
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Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
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Research works printed but not linked: 159
- 10.1016/j.immuni.2018.04.029 · DOI
- McCoy, L. E . The expanding array of HIV broadly neutralizing antibodies. Retrovirology 15, 70 (2018). · DOI
- 10.1038/s41590-018-0235-7 · DOI
- 10.1080/14760584.2019.1690458 · DOI
- 2021, Strategies for induction of HIV-1 envelope-reactive broadly neutralizing antibodies, J. Int. AIDS Soc, 24, e25831
- 10.1002/jia2.25797 · DOI
- 10.1073/pnas.1214785109 · DOI
- 10.1084/jem.20132494 · DOI
- 10.1038/nature17677 · DOI
- 10.1126/science.272.5263.872 · DOI
- 10.1016/0092-8674(86)90590-8 · DOI
- 10.1038/nature13926 · DOI
- 10.1126/science.3001934 · DOI
- 10.1016/S0952-7915(97)80110-0 · DOI
- 10.1016/0092-8674(88)90487-4 · DOI · Paper page
- 10.1016/S0304-4157(00)00014-9 · DOI
- 10.1146/annurev.immunol.19.1.253 · DOI
- 10.1073/pnas.85.24.9580 · DOI · Paper page
- 10.1126/science.2251501 · DOI
- 10.1089/aid.2010.0281 · DOI
- 10.1586/14760584.2016.1129905 · DOI
- 10.1126/science.aac4223 · DOI
- 10.1073/pnas.1204533109 · DOI
- 10.1073/pnas.1217537110 · DOI
- 10.1128/JVI.02827-12 · DOI
- 10.1128/JVI.00411-11 · DOI
- 10.1128/JVI.74.2.627-643.2000 · DOI
- 10.1128/JVI.76.6.2606-2616.2002 · DOI
- 10.1128/JVI.76.17.8875-8889.2002 · DOI
- 10.1371/journal.ppat.1003618 · DOI
- 10.1016/j.chom.2021.02.002 · DOI
- 10.1073/pnas.1314351110 · DOI
- 10.1126/science.1245625 · DOI
- 10.1126/science.1245627 · DOI
- 10.1128/JVI.03451-14 · DOI
- 10.1016/j.celrep.2015.03.047 · DOI
- Kong, L. et al. Uncleaved prefusion-optimized gp140 trimers derived from analysis of HIV-1 envelope metastability. Nat. Commun. 7, 12040 (2016). · DOI
- 2018, Structure of a cleavage-independent HIV Env recapitulates the glycoprotein architecture of the native cleaved trimer, Nat. Commun, 9, 1956, 10.1038/s41467-018-04272-y · DOI
- 2021, HIV vaccinology: 2021 update, Semin. Immunol, 51, 101470, 10.1016/j.smim.2021.101470 · DOI
- Liu, M. A . A Comparison of Plasmid DNA and mRNA as Vaccine Technologies. Vaccines (Basel ) 7, (2019). · DOI
- 10.1038/nrd.2017.243 · DOI · Paper page
- 10.1016/j.coi.2020.01.008 · DOI · Paper page
- 2021, From influenza to COVID-19: Lipid nanoparticle mRNA vaccines at the frontiers of infectious diseases, Acta Biomater, 131, 16, 10.1016/j.actbio.2021.06.023 · DOI
- 10.1084/jem.20171450 · DOI · Paper page
- Blasi, M. et al. IDLV-HIV-1 Env vaccination in non-human primates induces affinity maturation of antigen-specific memory B cells. Commun Biol 1, 134 (2018). · DOI
- 2021, Self-amplifying RNA vaccines for infectious diseases, Gene Ther, 28, 117, 10.1038/s41434-020-00204-y · DOI · Paper page
- 2021, Self-Replicating RNA Viruses for Vaccine Development against Infectious Diseases and Cancer, Vaccines (Basel, 9, 1187, 10.3390/vaccines9101187 · DOI
- 10.1517/14712598.2011.571670 · DOI
- Gallinaro, A. et al. Integrase Defective Lentiviral Vector as a Vaccine Platform for Delivering Influenza Antigens. Front. Immunol. 9, 171 (2018). · DOI
- 10.1016/s0140-6736(20)31604-4 · DOI · Paper page
- 10.1038/371080a0 · DOI · Paper page
- 10.1126/science.8248779 · DOI · Paper page
- 10.1126/science.3289117 · DOI · Paper page
- 10.1016/j.jmb.2004.02.020 · DOI
- 10.1016/S0969-2126(97)00233-5 · DOI
- 10.1016/j.virol.2009.07.042 · DOI
- 10.1073/pnas.1422269112 · DOI
- 10.1128/JVI.01247-13 · DOI
- 10.1074/jbc.M114.620534 · DOI
- 10.1371/journal.pone.0012466 · DOI
- 10.1128/JVI.01035-10 · DOI
- 10.1371/journal.pone.0016555 · DOI
- 10.1128/JVI.01768-15 · DOI
- 10.1016/j.cell.2015.11.056 · DOI
- 10.1016/j.immuni.2016.08.016 · DOI
- 10.1038/nature10373 · DOI · Paper page
- 10.1128/JVI.01791-15 · DOI
- 10.1016/j.immuni.2014.04.009 · DOI
- 2017, A Broadly Neutralizing Antibody Targets the Dynamic HIV Envelope Trimer Apex via a Long, Rigidified, and Anionic β-Hairpin Structure, Immunity, 46, 690, 10.1016/j.immuni.2017.03.017 · DOI
- Del Moral-Sánchez, I. et al. High thermostability improves neutralizing antibody responses induced by native-like HIV-1 envelope trimers. NPJ Vaccines 7, 27 (2022). · DOI
- 10.1016/j.jmb.2019.04.016 · DOI
- Derking, R. et al. Enhancing glycan occupancy of soluble HIV-1 envelope trimers to mimic the native viral spike. Cell Rep. 35, 108933 (2021). · DOI
- 2019, Structure and immunogenicity of a stabilized HIV-1 envelope trimer based on a group-M consensus sequence, Nat. Commun, 10, 2355, 10.1038/s41467-019-10262-5 · DOI
- 10.1016/j.immuni.2018.06.017 · DOI
- 10.1371/journal.pone.0040385 · DOI
- Kaynarcalidan, O. , Moreno Mascaraque, S. & Drexler, I . Vaccinia Virus: From Crude Smallpox Vaccines to Elaborate Viral Vector Vaccine Design. Biomedicines 9, (2021). · DOI
- 10.1016/bs.aivir.2016.07.001 · DOI
- 2016, Simian adenoviruses as vaccine vectors, Future Virol, 11, 649, 10.2217/fvl-2016-0070 · DOI
- 2021, Modified Vaccinia Virus Ankara as a Viral Vector for Vaccine Candidates against Chikungunya Virus, Biomedicines, 9, 1780
- 10.1016/j.vaccine.2020.08.050 · DOI
- 10.1371/journal.pone.0181886 · DOI
- 2021, Effect of epitope variant co-delivery on the depth of CD8 T cell responses induced by HIV-1 conserved mosaic vaccines, Mol Ther Methods Clin Dev, 21, 741, 10.1016/j.omtm.2021.04.018 · DOI
- Mohamed, Y. S. et al. Specificity of CD8 T-Cell Responses Following Vaccination with Conserved Regions of HIV-1 in Nairobi, Kenya. Vaccines (Basel ) 8, 260 (2020). · DOI
- 2019, Aiming for protective T-cell responses: a focus on the first generation conserved-region HIVconsv vaccines in preventive and therapeutic clinical trials, Expert Rev. Vaccines, 18, 1029, 10.1080/14760584.2019.1675518 · DOI
- 10.1038/mt.2016.3 · DOI
- 10.1371/journal.ppat.1003618 · DOI
- 10.1038/s41467-019-12080-1 · DOI
- Brouwer, P. J. M. et al. Immunofocusing and enhancing autologous Tier-2 HIV-1 neutralization by displaying Env trimers on two-component protein nanoparticles. NPJ Vaccines 6, 24 (2021). · DOI
- 10.1128/JVI.01653-15 · DOI
- 10.1016/j.immuni.2018.07.009 · DOI
- 2020, Mapping Polyclonal Antibody Responses in Non-human Primates Vaccinated with HIV Env Trimer Subunit Vaccines, Cell Rep, 30, 3755, 10.1016/j.celrep.2020.02.061 · DOI
- 10.1016/j.celrep.2016.07.074 · DOI
- 10.1371/journal.ppat.1006913 · DOI
- 2020, Autologous Antibody Responses to an HIV Envelope Glycan Hole Are Not Easily Broadened in Rabbits, Journal of Virology, 94, e01861
- 10.1371/journal.ppat.1008753 · DOI
- 10.1016/j.cell.2018.02.054 · DOI
- 10.1126/science.1222908 · DOI
- 10.1038/nature11414 · DOI
- 10.1016/j.cell.2019.04.011 · DOI
- 10.1126/science.1204839 · DOI
- 10.1126/science.1205669 · DOI · Paper page
- 10.1021/acs.jproteome.5b00416 · DOI
- 2021, A cross-neutralizing antibody between HIV-1 and influenza virus, PLoS Pathog, 17, e1009407, 10.1371/journal.ppat.1009407 · DOI
- 2017, Improving the Immunogenicity of Native-like HIV-1 Envelope Trimers by Hyperstabilization, Cell Reports, 20, 1805, 10.1016/j.celrep.2017.07.077 · DOI
- 2020, Neutralizing Antibody Responses Induced by HIV-1 Envelope Glycoprotein SOSIP Trimers Derived from Elite Neutralizers, J. Virol, 94, e01214
- 10.1126/sciadv.aba0512 · DOI
- Reiss, E. I. M. M. et al. Fine-mapping the immunodominant antibody epitopes on consensus sequence-based HIV-1 envelope trimer vaccine candidates. NPJ Vaccines 7, 152 (2022). · DOI
- 2022, Assessment of a quadrivalent nucleoside-modified mRNA vaccine that protects against group 2 influenza viruses, Proc. Natl. Acad. Sci. U. S. A, 119, e2206333119, 10.1073/pnas.2206333119 · DOI
- 2021, Quadrivalent influenza nanoparticle vaccines induce broad protection, Nature, 592, 623, 10.1038/s41586-021-03365-x · DOI
- 2021, Influenza vaccine: progress in a vaccine that elicits a broad immune response, Expert Review of Vaccines, 20, 1097, 10.1080/14760584.2021.1964961 · DOI
- 2022, Influenza vaccines: where we are, where we are going, Curr. Opin. Pediatr, 34, 119, 10.1097/MOP.0000000000001103 · DOI
- 10.1128/JVI.00641-13 · DOI
- 10.1371/journal.pone.0003942 · DOI
- 10.1128/JVI.00700-11 · DOI
- Behrens, A.-J. et al. Molecular Architecture of the Cleavage-Dependent Mannose Patch on a Soluble HIV-1 Envelope Glycoprotein Trimer. J. Virol. 91, (2017). · DOI
- 2022, Influenza chimeric hemagglutinin structures in complex with broadly protective antibodies to the stem and trimer interface, Proceedings of the National Academy of Sciences, 119, e220082111
- 2022, Broadly neutralizing antibodies target a haemagglutinin anchor epitope, Nature, 602, 314, 10.1038/s41586-021-04356-8 · DOI
- 10.1038/371080a0 · DOI · Paper page
- Wijesundara, D. K. et al. Rapid Response Subunit Vaccine Design in the Absence of Structural Information. Front. Immunol. 11, 592370 (2020). · DOI
- 2021, Safety and immunogenicity of an MF59-adjuvanted spike glycoprotein-clamp vaccine for SARS-CoV-2: a randomised, double-blind, placebo-controlled, phase 1 trial, Lancet Infect. Dis, 21, 1383, 10.1016/S1473-3099(21)00200-0 · DOI
- 10.1371/journal.pone.0000984 · DOI
- 2015, Engineering and Characterization of a Fluorescent Native-Like HIV-1 Envelope Glycoprotein Trimer, Biomolecules, 5, 2919, 10.3390/biom5042919 · DOI
- 10.1126/science.aar6711 · DOI · Paper page
- 2021, Engineering Cas9 for human genome editing, Curr. Opin. Struct. Biol, 69, 86, 10.1016/j.sbi.2021.03.004 · DOI
- Ahmad, Z. A. et al. scFv antibody: principles and clinical application. Clin. Dev. Immunol. 2012, 980250 (2012). · DOI
- 2022, Safety and immunogenicity of a self-amplifying RNA vaccine against COVID-19: COVAC1, a phase I, dose-ranging trial, EClinicalMedicine, 44, 101262, 10.1016/j.eclinm.2021.101262 · DOI · Paper page
- Ringe, R. P. et al. Closing and Opening Holes in the Glycan Shield of HIV-1 Envelope Glycoprotein SOSIP Trimers Can Redirect the Neutralizing Antibody Response to the Newly Unmasked Epitopes. J. Virol. 93, (2019). · DOI
- 10.1084/jem.20161160 · DOI
- 10.1038/s41586-019-1250-z · DOI
- 10.1038/s41591-018-0042-6 · DOI
- 10.1371/journal.ppat.1009807 · DOI
- 10.1371/journal.ppat.1005864 · DOI
- 2018, Immunogenicity in Rabbits of HIV-1 SOSIP Trimers from Clades A, B, and C, Given Individually, Sequentially, or in Combination, Journal of Virology, 92, e01957
- 10.1016/j.cell.2016.07.030 · DOI
- 10.1128/jvi.02652-15 · DOI
- 2016, An HIV-1 antibody from an elite neutralizer implicates the fusion peptide as a site of vulnerability, Nat Microbiol, 2, 16199, 10.1038/nmicrobiol.2016.199 · DOI
- 10.1128/JVI.03422-13 · DOI
- 2014, Enhanced human receptor binding by H5 haemagglutinins, Virology, 456-457, 179, 10.1016/j.virol.2014.03.008 · DOI
- 10.1073/pnas.0602566103 · DOI
- 10.1371/journal.pone.0033428 · DOI
- 10.1002/PRO.3943 · DOI
- 10.1093/bioinformatics/btg299 · DOI
- 10.1038/s41586-020-2649-2 · DOI · Paper page
- McKinney, W. Data Structures for Statistical Computing in Python. in Proceedings of the Python in Science Conference 56–61 (2010). · DOI
- 2021, Seaborn: statistical data visualization, Journal of Open Source Software, 6, 3021, 10.21105/joss.03021 · DOI · Paper page
- 10.1109/mcse.2007.55 · DOI · Paper page
- 10.1016/j.celrep.2015.05.017 · DOI
- 10.1016/j.jsb.2005.03.010 · DOI
- 10.1016/j.jsb.2009.01.002 · DOI
- 10.1016/j.jsb.2012.09.006 · DOI · Paper page
- 10.1007/BF00197809 · DOI
- 10.1107/S0907444910007493 · DOI · Paper page
- 10.1107/S0907444909052925 · DOI · Paper page
- Kabat, E. A. , Te Wu, T. , Perry, H. M. , Gottesman, K. S. & Foeller, C . Sequences of Proteins of Immunological Interest. (5th edition, National Institutes of Health, Bethesda, MD, 1991).
- 10.1007/978-1-4615-1823-5_10 · DOI
- 10.1016/j.vaccine.2013.05.007 · DOI
- 10.1007/978-1-59745-170-3_26 · DOI
- 10.1038/nature01470 · DOI · Paper page
- 2019, Efficient Induction of T Cells against Conserved HIV-1 Regions by Mosaic Vaccines Delivered as Self-Amplifying mRNA, Mol Ther Methods Clin Dev, 12, 32, 10.1016/j.omtm.2018.10.010 · DOI · Paper page
Metadata
- Authors
- del Moral-Sánchez, I., Wee, E. G., Xian, Y., Lee, W.-H., Allen, J. D., Torrents de la Peña, A., Rocha, R. F., Ferguson, J., León, A. N., Koekkoek, S., Schermer, E. E., Burger, J. A., Kumar, S., Zwolsman, R., Brinkkemper, M., Aartse, A., Eggink, D., Han, J., Yuan, M., Crispin, M., Ozorowski, G., Ward, A. B., Wilson, I. A., Hanke, T., Sliepen, K., & Sanders, R. W.
- Affiliations
- Amsterdam University Medical Centers (NL)
- University of Oxford (GB)
- Scripps Research Institute (US)
- University of Southampton (GB)
- Biomedical Primate Research Centre (NL)
- Cornell University (US)
- Corresponding author
- Sanders, Rogier W.
- ORCID
- Venue
- npj Vaccines
- Publisher
- openRxiv
- Published
- 2023-08-27
- Volume
- 9
- Issue
- 1
- Pages
- 74-74
- ISSN
- 2059-0105 (ISSN-L)
- PMC
- PMC10998906
- OpenAlex
- W4394014785
- Cited by
- 14
- References
- 1
- Citations by year
- 2026: 3 · 2025: 9 · 2024: 2
- FWCI
- 3.24
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- cc-by
- Locations
- npj Vaccines (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- ePrints Soton (University of Southampton) (acceptedVersion, cc-by)
- OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- U.S. Department of Energy (76SF00515, DE–AC02–76SF00515, P41GM103393, AC02‐76SF00515, DE-AC02-)
- Bill and Melinda Gates Foundation (OPP1111923 and OPP1132237, OPP1111923, OPP1115782, OPP1132237)
- International AIDS Vaccine Initiative (OPP1115782, PGT145)
- European Molecular Biology Organization (STS-7814)
- Aids Fonds (2016019)
- European Commission (HORIZON2020, 681137, DE-AC02-76SF00515)
- Nederlandse Organisatie voor Wetenschappelijk Onderzoek
- National Institutes of Health (DE-AC02-76SF00515, AI110657)
- Office of Science (AC02-76SF00515, P41GM103393, DE-AC02-76SF0051 5, DE-AC02, 76SF00515)
- University of California, San Francisco (NIH P41-GM103311, P41-GM103311)
- National Institute of General Medical Sciences (GM103311, P41GM103311, NIH P41-GM103311, DE-AC02-76SF00515, P41GM103393)
- National Institute of Allergy and Infectious Diseases (P01AI110657)
- Basic Energy Sciences (DE-AC02, P41GM103393, 76SF00515, AC02-76SF00515, DE-AC-02-76SF00515)
- Biological and Environmental Research (P41 GM103393, DE- AC0276SF00515)
- SLAC National Accelerator Laboratory (DEAC02−76SF00515, AC02‐76SF00515, P41GM103393)
- Topics
- Life Sciences › Immunology and Microbiology › Virology › HIV Research and Treatment
- Health Sciences › Medicine › Infectious Diseases › SARS-CoV-2 and COVID-19 Research
- Health Sciences › Medicine › Epidemiology › Influenza Virus Research Studies
- Keywords
- HIV-1 envelope glycoprotein, influenza hemagglutinin, nucleic acid-based vaccines, broadly neutralizing antibodies, SOSIP trimers, viral vector vaccines, trimerization domain, immunogen design
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