The neuroanatomical ultrastructure and function of a biological ring attractor

STAR: ultrafast universal RNA-seq aligner

Dobin, A., Davis, C. A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., & Gingeras, T. R. (2013) · Bioinformatics · doi:10.1093/bioinformatics/bts635 · Cited by 51,709 · see citing works

<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Robinson, M. D., McCarthy, D. J., & Smyth, G. K. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btp616 · Cited by 41,364 · see citing works

Cutadapt removes adapter sequences from high-throughput sequencing reads

Martin, M. (2011) · EMBnet.journal · doi:10.14806/ej.17.1.200 · Cited by 33,889 · see citing works

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Li, B., & Dewey, C. N. (2011) · BMC Bioinformatics · doi:10.1186/1471-2105-12-323 · Cited by 22,179 · see citing works

Ultrasensitive fluorescent proteins for imaging neuronal activity

Chen, T.-W., Wardill, T. J., Sun, Y., Pulver, S. R., Renninger, S. L., Baohan, A., Schreiter, E. R., Kerr, R. A., Orger, M. B., Jayaraman, V., et al. (2013) · Nature · doi:10.1038/nature12354 · Cited by 6,474 · see citing works

<b>CircStat</b> : A <i>MATLAB</i> Toolbox for Circular Statistics

Berens, P. (2009) · Journal of Statistical Software · doi:10.18637/jss.v031.i10 · Cited by 3,099 · see citing works

Dynamics of pattern formation in lateral-inhibition type neural fields

Амари, Ш.-И. (1977) · Biological Cybernetics · doi:10.1007/bf00337259 · Cited by 2,086 · see citing works

Head-direction cells recorded from the postsubiculum in freely moving rats. I. Description and quantitative analysis

Taube, J., Muller, R., & Ranck, J. (1990) · The Journal of Neuroscience · doi:10.1523/jneurosci.10-02-00420.1990 · Cited by 1,809 · see citing works

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments

Dana, H., Sun, Y., Mohar, B., Hulse, B. K., Kerlin, A., Hasseman, J. P., Tsegaye, G., Tsang, A., Wong, A. M., Patel, R. H., et al. (2019) · Nature Methods · doi:10.1038/s41592-019-0435-6 · Cited by 1,198 · see citing works

Synaptic Mechanisms and Network Dynamics Underlying Spatial Working Memory in a Cortical Network Model

Compte, A. (2000) · Cerebral Cortex · doi:10.1093/cercor/10.9.910 · Cited by 1,143 · see citing works

A connectome and analysis of the adult Drosophila central brain

Scheffer, L. K., Xu, C. S., Januszewski, M., Lu, Z., Takemura, S.-Y., Hayworth, K. J., Huang, G. B., Shinomiya, K., Maitlin-Shepard, J., Berg, S., et al. (2020) · eLife · doi:10.7554/elife.57443 · Cited by 1,128 · see citing works

Theory of orientation tuning in visual cortex.

Ben-Yishai, R., Bar‐Or, R. L., & Sompolinsky, H. (1995) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.92.9.3844 · Cited by 1,091 · see citing works

A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster

Zheng, Z., Lauritzen, J. S., Perlman, E., Robinson, C. G., Nichols, M., Milkie, D., Torrens, O., Price, J., Fisher, C. B., Sharifi, N., et al. (2018) · Cell · doi:10.1016/j.cell.2018.06.019 · Cited by 1,050 · see citing works

Representation of spatial orientation by the intrinsic dynamics of the head-direction cell ensemble: a theory

Zhang, K. (1996) · The Journal of Neuroscience · doi:10.1523/jneurosci.16-06-02112.1996 · Cited by 1,001 · see citing works

The FLP recombinase of yeast catalyzes site-specific recombination in the drosophila genome

Golic, K. G., & Lindquist, S. (1989) · Cell · doi:10.1016/0092-8674(89)90033-0 · Cited by 942 · see citing works

The Head Direction Signal: Origins and Sensory-Motor Integration

Taube, J. S. (2007) · Annual Review of Neuroscience · doi:10.1146/annurev.neuro.29.051605.112854 · Cited by 916 · see citing works

Head-direction cells recorded from the postsubiculum in freely moving rats. II. Effects of environmental manipulations

Taube, J. S., Muller, R., & Ranck, J. B. (1990) · Journal of Neuroscience · doi:10.1523/jneurosci.10-02-00436.1990 · Cited by 887 · see citing works

FlyBase 2.0: the next generation

Thurmond, J., Goodman, J. L., Strelets, V. B., Attrill, H. L., Gramates, L. S., Marygold, S. J., Matthews, B. B., Millburn, G., Antonazzo, G., Trovisco, V., et al. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky1003 · Cited by 733 · see citing works

Neural dynamics for landmark orientation and angular path integration

Seelig, J. D., & Jayaraman, V. (2015) · Nature · doi:10.1038/nature14446 · Cited by 718 · see citing works

Optimized tools for multicolor stochastic labeling reveal diverse stereotyped cell arrangements in the fly visual system

Nern, A., Pfeiffer, B. D., & Rubin, G. M. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1506763112 · Cited by 584 · see citing works

Fast nonnegative deconvolution for spike train inference from population calcium imaging

Vogelstein, J. T., Packer, A. M., Machado, T. A., Sippy, T., Babadi, B., Yuste, R., & Paninski, L. (2010) · Journal of Neurophysiology · doi:10.1152/jn.01073.2009 · Cited by 449 · see citing works

Ring attractor dynamics in the <i>Drosophila</i> central brain

Kim, S. S., Rouault, H., Druckmann, S., & Jayaraman, V. (2017) · Science · doi:10.1126/science.aal4835 · Cited by 417 · see citing works

Untitled work

(1995) · PubMed · Cited by 411 · see citing works

Distinct memory traces for two visual features in the Drosophila brain

Liu, G., Seiler, H., Wen, A., Zars, T. D., Ito, K., Wolf, R., Heisenberg, M., & Liu, L. (2006) · Nature · doi:10.1038/nature04381 · Cited by 407 · see citing works

Visual place learning in Drosophila melanogaster

Ofstad, T. A., Zuker, C. S., & Reiser, M. B. (2011) · Nature · doi:10.1038/nature10131 · Cited by 399 · see citing works

NEURON and Python

Hines, M. L. (2009) · Frontiers in Neuroinformatics · doi:10.3389/neuro.11.001.2009 · Cited by 396 · see citing works

An Anatomically Constrained Model for Path Integration in the Bee Brain

Stone, T., Webb, B., Adden, A., Weddig, N. B., Honkanen, A., Templin, R., Wcislo, W., Scimeca, L., Warrant, E., & Heinze, S. (2017) · Current Biology · doi:10.1016/j.cub.2017.08.052 · Cited by 377 · see citing works

The intrinsic attractor manifold and population dynamics of a canonical cognitive circuit across waking and sleep

Chaudhuri, R., Gerçek, B., Pandey, B., Peyrache, A., & Fiete, I. (2019) · Nature Neuroscience · doi:10.1038/s41593-019-0460-x · Cited by 367 · see citing works

Analysis of a spatial orientation memory in Drosophila

Neuser, K., Triphan, T., Mronz, M., Poeck, B., & Strauß, R. (2008) · Nature · doi:10.1038/nature07003 · Cited by 363 · see citing works

Maplike Representation of Celestial E -Vector Orientations in the Brain of an Insect

Heinze, S., & Homberg, U. (2007) · Science · doi:10.1126/science.1135531 · Cited by 360 · see citing works

Neuronal architecture of the central complex in Drosophila melanogaster

Hanesch, U., Fischbach, K., & Heisenberg, M. (2004) · Cell and Tissue Research · doi:10.1007/bf00261838 · Cited by 349 · see citing works

Two-photon calcium imaging from head-fixed Drosophila during optomotor walking behavior

Seelig, J. D., Chiappe, M. E., Lott, G. K., Dutta, A., Osborne, J. E., Reiser, M. B., & Jayaraman, V. (2010) · Nature Methods · doi:10.1038/nmeth.1468 · Cited by 345 · see citing works

Quantitative neuroanatomy for connectomics in Drosophila

Schneider-Mizell, C. M., Gerhard, S., Longair, M., Kazimiers, T., Li, F., Zwart, M. F., Champion, A., Midgley, F. M., Fetter, R. D., Saalfeld, S., et al. (2016) · eLife · doi:10.7554/elife.12059 · Cited by 332 · see citing works

A neural circuit architecture for angular integration in Drosophila

Green, J., Adachi, A., Shah, K. K., Hirokawa, J. D., Magani, P. S., & Maimon, G. (2017) · Nature · doi:10.1038/nature22343 · Cited by 331 · cited 14× · see citing works

Characterization of Central Inhibitory Muscarinic Autoreceptors by the Use of Muscarinic Acetylcholine Receptor Knock-Out Mice

Zhang, W., Basile, A. S., Gomeza, J., Volpicelli‐Daley, L. A., Levey, A. I., & Wess, J. (2002) · Journal of Neuroscience · doi:10.1523/jneurosci.22-05-01709.2002 · Cited by 314 · see citing works

Sleep Drive Is Encoded by Neural Plastic Changes in a Dedicated Circuit

Liu, S., Liu, Q., Tabuchi, M., & Wu, M. N. (2016) · Cell · doi:10.1016/j.cell.2016.04.013 · Cited by 308 · see citing works

Transsynaptic mapping of second-order taste neurons in flies by trans-Tango

Talay, M., Richman, E. B., Snell, N. J., Hartmann, G. G., Fisher, J. D., Sorkaç, A., Santoyo, J. F., Chou-Freed, C., Nair, N., Johnson, M., et al. (2017) · Neuron · doi:10.1016/j.neuron.2017.10.011 · Cited by 301 · see citing works

Interactions Between Idiothetic Cues and External Landmarks in the Control of Place Cells and Head Direction Cells

Knierim, J. J., Kudrimoti, H. S., & McNaughton, B. L. (1998) · Journal of Neurophysiology · doi:10.1152/jn.1998.80.1.425 · Cited by 297 · see citing works

Glutamate is an inhibitory neurotransmitter in the <i>Drosophila</i> olfactory system

Liu, W. W., & Wilson, R. I. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1220560110 · Cited by 297 · see citing works

NBLAST: Rapid, Sensitive Comparison of Neuronal Structure and Construction of Neuron Family Databases

Costa, M., Manton, J. D., Ostrovsky, A. D., Prohaska, S., & Jefferis, G. S. X. E. (2016) · Neuron · doi:10.1016/j.neuron.2016.06.012 · Cited by 294 · see citing works

Feature detection and orientation tuning in the Drosophila central complex

Seelig, J. D., & Jayaraman, V. (2013) · Nature · doi:10.1038/nature12601 · Cited by 290 · see citing works

Neuroarchitecture and neuroanatomy of the <i>Drosophila</i> central complex: A GAL4‐based dissection of protocerebral bridge neurons and circuits

Wolff, T., Iyer, N. A., & Rubin, G. M. (2015) · Journal of Comparative Neurology · doi:10.1002/cne.23705 · Cited by 286 · see citing works

Angular velocity integration in a fly heading circuit

Turner-Evans, D., Wegener, S., Rouault, H., Franconville, R., Wolff, T., Seelig, J. D., Druckmann, S., & Jayaraman, V. (2017) · eLife · doi:10.7554/elife.23496 · Cited by 281 · see citing works

Internally organized mechanisms of the head direction sense

Peyrache, A., Lacroix, M. M., Petersen, P. C., & Buzsáki, G. (2015) · Nature Neuroscience · doi:10.1038/nn.3968 · Cited by 274 · see citing works

Sun Compass Integration of Skylight Cues in Migratory Monarch Butterflies

Heinze, S., & Reppert, S. M. (2011) · Neuron · doi:10.1016/j.neuron.2010.12.025 · Cited by 268 · see citing works

A genetic, genomic, and computational resource for exploring neural circuit function

Davis, F. P., Nern, A., Picard, S., Reiser, M. B., Rubin, G. M., Eddy, S. R., & Henry, G. L. (2020) · eLife · doi:10.7554/elife.50901 · Cited by 268 · see citing works

Robust Spatial Working Memory through Homeostatic Synaptic Scaling in Heterogeneous Cortical Networks

Renart, A., Song, P., & Wang, X. (2003) · Neuron · doi:10.1016/s0896-6273(03)00255-1 · Cited by 243 · see citing works

Starcode: sequence clustering based on all-pairs search

Zorita, E. V., Cuscó, P., & Filion, G. J. P. (2015) · Bioinformatics · doi:10.1093/bioinformatics/btv053 · Cited by 241 · see citing works

Central neural coding of sky polarization in insects

Homberg, U., Heinze, S., Pfeiffer, K., Kinoshita, M., & el Jundi, B. (2011) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2010.0199 · Cited by 238 · see citing works

NMDA Receptors Mediate Olfactory Learning and Memory in Drosophila

Xia, S., Miyashita, T., Fu, T., Lin, W., Wu, C., Pyzocha, L., Lin, I.-R., Saitoe, M., Tully, T., & Chiang, A. (2005) · Current Biology · doi:10.1016/j.cub.2005.02.059 · Cited by 226 · see citing works

Attractor Dynamics of Spatially Correlated Neural Activity in the Limbic System

Knierim, J. J., & Zhang, K. (2012) · Annual Review of Neuroscience · doi:10.1146/annurev-neuro-062111-150351 · Cited by 222 · see citing works

Characterization of directed differentiation by high-throughput single-cell RNA-SeqPreprint

Soumillon, M., Cacchiarelli, D., Semrau, S., van Oudenaarden, A., & Mikkelsen, T. S. (2014) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/003236 · Cited by 217 · see citing works

The VT GAL4, LexA, and split-GAL4 driver line collections for targeted expression in the Drosophila nervous systemPreprint

Tirián, L., & Dickson, B. J. (2017) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/198648 · Cited by 217 · see citing works

The natverse, a versatile toolbox for combining and analysing neuroanatomical data

Bates, A. S., Manton, J. D., Jagannathan, S. R., Costa, M., Schlegel, P., Rohlfing, T., & Jefferis, G. S. (2020) · eLife · doi:10.7554/elife.53350 · Cited by 215 · see citing works

Calcitonin Gene-Related Peptide Neurons Mediate Sleep-Specific Circadian Output in Drosophila

Kunst, M., Hughes, M. E., Raccuglia, D., Felix, M., Li, M., Barnett, G., Duah, J., & Nitabach, M. N. (2014) · Current Biology · doi:10.1016/j.cub.2014.09.077 · Cited by 213 · see citing works

Recurrent Circuitry for Balancing Sleep Need and Sleep

Donlea, J. M., Pimentel, D. O., Talbot, C. B., Kempf, A., Omoto, J. J., Hartenstein, V., & Miesenböck, G. (2018) · Neuron · doi:10.1016/j.neuron.2017.12.016 · Cited by 212 · see citing works

Neural coding underlying the cue preference for celestial orientation

el Jundi, B., Warrant, E. J., Byrne, M. J., Khaldy, L., Baird, E., Smolka, J., & Dacke, M. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1501272112 · Cited by 203 · see citing works

Drosophila Dscam Is Required for Divergent Segregation of Sister Branches and Suppresses Ectopic Bifurcation of Axons

Wang, J., Zugates, C. T., Liang, I. H., Lee, C.-H. J., & Lee, T. (2002) · Neuron · doi:10.1016/s0896-6273(02)00570-6 · Cited by 202 · see citing works

Visualizing glutamatergic cell bodies and synapses in Drosophila larval and adult CNS

Daniels, R. W., Gelfand, M. V., Collins, C. A., & DiAntonio, A. (2008) · The Journal of Comparative Neurology · doi:10.1002/cne.21670 · Cited by 186 · see citing works

Neurons of the Central Complex of the LocustSchistocerca gregariaare Sensitive to Polarized Light

Vitzthum, H., Müller, M. C. M., & Homberg, U. (2002) · Journal of Neuroscience · doi:10.1523/jneurosci.22-03-01114.2002 · Cited by 177 · see citing works

Generation of stable heading representations in diverse visual scenes

Kim, S. S., Hermundstad, A. M., Romani, S., Abbott, L. F., & Jayaraman, V. (2019) · Nature · doi:10.1038/s41586-019-1767-1 · Cited by 172 · see citing works

Sensorimotor experience remaps visual input to a heading-direction network

Fisher, Y. E., Lu, J., D’Alessandro, I., & Wilson, R. I. (2019) · Nature · doi:10.1038/s41586-019-1772-4 · Cited by 165 · see citing works

Sun Navigation Requires Compass Neurons in Drosophila

Giraldo, Y. M., Leitch, K. J., Ros, I. G., Warren, T. L., Weir, P. T., & Dickinson, M. H. (2018) · Current Biology · doi:10.1016/j.cub.2018.07.002 · Cited by 161 · see citing works

Signal Propagation inDrosophilaCentral Neurons

Gouwens, N. W., & Wilson, R. I. (2009) · Journal of Neuroscience · doi:10.1523/jneurosci.0764-09.2009 · Cited by 159 · see citing works

Neuroarchitecture of the <i>Drosophila</i> central complex: A catalog of nodulus and asymmetrical body neurons and a revision of the protocerebral bridge catalog

Wolff, T., & Rubin, G. M. (2018) · Journal of Comparative Neurology · doi:10.1002/cne.24512 · Cited by 156 · see citing works

Object tracking in motion-blind flies

Bahl, A., Ammer, G., Schilling, T., & Borst, A. (2013) · Nature Neuroscience · doi:10.1038/nn.3386 · Cited by 152 · see citing works

Synaptic transmission parallels neuromodulation in a central food-intake circuit

Schlegel, P., Texada, M. J., Miroschnikow, A., Schoofs, A., Hückesfeld, S., Peters, M., Schneider-Mizell, C. M., Lacin, H., Li, F., Fetter, R. D., et al. (2016) · eLife · doi:10.7554/elife.16799 · Cited by 151 · see citing works

A Connectome of the Adult Drosophila Central BrainPreprint

Xu, C. S., Januszewski, M., Lu, Z., Takemura, S.-Y., Hayworth, K. J., Huang, G. B., Shinomiya, K., Maitin-Shepard, J., Ackerman, D., Berg, S., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.01.21.911859 · Cited by 150 · see citing works

Head Direction Cell Representations Maintain Internal Coherence during Conflicting Proximal and Distal Cue Rotations: Comparison with Hippocampal Place Cells

Yoganarasimha, D., Yu, X., & Knierim, J. J. (2006) · The Journal of Neuroscience · doi:10.1523/jneurosci.3885-05.2006 · Cited by 149 · see citing works

Disruption of the Head Direction Cell Signal after Occlusion of the Semicircular Canals in the Freely Moving Chinchilla

Muir, G. M., Brown, J. E., Carey, J. P., Hirvonen, T. P., Santina, C. C. D., Minor, L. B., & Taube, J. S. (2009) · Journal of Neuroscience · doi:10.1523/jneurosci.3450-09.2009 · Cited by 147 · see citing works

Vestibular and attractor network basis of the head direction cell signal in subcortical circuits

Clark, B. J., & Taube, J. S. (2012) · Frontiers in Neural Circuits · doi:10.3389/fncir.2012.00007 · Cited by 144 · see citing works

Structure of the adult central complex in Drosophila: Organization of distinct neuronal subsets

Young, J. M., & Armstrong, J. D. (2009) · The Journal of Comparative Neurology · doi:10.1002/cne.22284 · Cited by 142 · see citing works

Nitric oxide acts as a cotransmitter in a subset of dopaminergic neurons to diversify memory dynamics

Aso, Y., Ray, R. P., Long, X., Bushey, D., Cichewicz, K., Ngo, T.-T., Sharp, B., Christoforou, C., Hu, A., Lemire, A. L., et al. (2019) · eLife · doi:10.7554/elife.49257 · Cited by 141 · see citing works

Neural Activity in the Central Complex of the Insect Brain Is Linked to Locomotor Changes

Bender, J. A., Pollack, A. J., & Ritzmann, R. E. (2010) · Current Biology · doi:10.1016/j.cub.2010.03.054 · Cited by 139 · see citing works

Visual Input to the Drosophila Central Complex by Developmentally and Functionally Distinct Neuronal Populations

Omoto, J. J., Keleş, M. F., Nguyen, B.-C. M., Bolanos, C., Lovick, J. K., Frye, M. A., & Hartenstein, V. (2017) · Current Biology · doi:10.1016/j.cub.2017.02.063 · Cited by 137 · see citing works

A neural heading estimate is compared with an internal goal to guide oriented navigation

Green, J., Vijayan, V., Mussells Pires, P., Adachi, A., & Maimon, G. (2019) · Nature Neuroscience · doi:10.1038/s41593-019-0444-x · Cited by 137 · see citing works

Fundamental limits on persistent activity in networks of noisy neurons

Burak, Y., & Fiete, I. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1117386109 · Cited by 136 · see citing works

Path integration: how the head direction signal maintains and corrects spatial orientation

Valerio, S., & Taube, J. S. (2012) · Nature Neuroscience · doi:10.1038/nn.3215 · Cited by 136 · see citing works

A Comprehensive Wiring Diagram of the Protocerebral Bridge for Visual Information Processing in the Drosophila Brain

Lin, C.-Y., Chuang, C.-C., Hua, T.-E., Chen, C., Dickson, B. J., Greenspan, R. J., & Chiang, A. (2013) · Cell Reports · doi:10.1016/j.celrep.2013.04.022 · Cited by 131 · see citing works

Ovarian hormones differentially influence immunoreactivity for dopamine ?- hydroxylase, choline acetyltransferase, and serotonin in the dorsolateral prefrontal cortex of adult rhesus monkeys

Kritzer, M. F., & Kohama, S. G. (1999) · The Journal of Comparative Neurology · doi:10.1002/(sici)1096-9861(19990705)409:3 · Cited by 125 · see citing works

Double-ring network model of the head-direction system

Xie, X., Hahnloser, R. H. R., & Seung, H. S. (2002) · Physical Review E · doi:10.1103/physreve.66.041902 · Cited by 124 · see citing works

Building a functional connectome of the Drosophila central complex

Franconville, R., Beron, C. C., & Jayaraman, V. (2018) · eLife · doi:10.7554/elife.37017 · Cited by 123 · see citing works

Wiring variations that enable and constrain neural computation in a sensory microcircuit

Tobin, W. F., Wilson, R. I., & Lee, W.-C. A. (2017) · eLife · doi:10.7554/elife.24838 · Cited by 123 · see citing works

Dynamics and Computation of Continuous Attractors

Wu, S., Hamaguchi, K., & Amari, S.-I. (2008) · Neural Computation · doi:10.1162/neco.2008.10-06-378 · Cited by 121 · see citing works

Conditional disruption of synaptic transmission induces male–male courtship behavior in Drosophila

Kitamoto, T. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.202489099 · Cited by 120 · see citing works

Integration of polarization and chromatic cues in the insect sky compass

el Jundi, B., Pfeiffer, K., Heinze, S., & Homberg, U. (2014) · Journal of Comparative Physiology A · doi:10.1007/s00359-014-0890-6 · Cited by 119 · see citing works

Linking the Input to the Output: New Sets of Neurons Complement the Polarization Vision Network in the Locust Central Complex

Heinze, S., & Homberg, U. (2009) · Journal of Neuroscience · doi:10.1523/jneurosci.0332-09.2009 · Cited by 113 · see citing works

γ‐Aminobutyric acid (GABA) signaling components in Drosophila: Immunocytochemical localization of GABAB receptors in relation to the GABAA receptor subunit RDL and a vesicular GABA transporter

Enell, L. E., Hamasaka, Y., Kołodziejczyk, A. M., & Nässel, D. R. (2007) · The Journal of Comparative Neurology · doi:10.1002/cne.21472 · Cited by 112 · see citing works

Neural signatures of dynamic stimulus selection in Drosophila

Sun, Y., Nern, A., Franconville, R., Dana, H., Schreiter, E. R., Looger, L. L., Svoboda, K., Kim, D. S., Hermundstad, A. M., & Jayaraman, V. (2017) · Nature Neuroscience · doi:10.1038/nn.4581 · Cited by 112 · see citing works

Organization and neural connections of the anterior optic tubercle in the brain of the locust, Schistocerca gregaria

Homberg, U., Hofer, S., Pfeiffer, K., & Gebhardt, S. (2003) · The Journal of Comparative Neurology · doi:10.1002/cne.10771 · Cited by 110 · see citing works

Short-Term Facilitation may Stabilize Parametric Working Memory Trace

Itskov, V., Hansel, D., & Tsodyks, M. V. (2011) · Frontiers in Computational Neuroscience · doi:10.3389/fncom.2011.00040 · Cited by 108 · see citing works

Fast Excitatory Synaptic Transmission Mediated by Nicotinic Acetylcholine Receptors inDrosophilaNeurons

Lee, D., & O’Dowd, D. K. (1999) · Journal of Neuroscience · doi:10.1523/jneurosci.19-13-05311.1999 · Cited by 108 · see citing works

Taste-independent nutrient selection is mediated by a brain-specific Na+/solute co-transporter in Drosophila

Dus, M., Ai, M., & Suh, G. S. B. (2013) · Nature Neuroscience · doi:10.1038/nn.3372 · Cited by 107 · see citing works

Neural activity in the central complex of the cockroach brain is linked to turning behaviors

Guo, P., & Ritzmann, R. E. (2012) · Journal of Experimental Biology · doi:10.1242/jeb.080473 · Cited by 104 · see citing works

Morning and Evening Circadian Pacemakers Independently Drive Premotor Centers via a Specific Dopamine Relay

Liang, X., Ho, M. C. W., Zhang, Y., Li, Y., Wu, M. N., Holy, T. E., & Taghert, P. H. (2019) · Neuron · doi:10.1016/j.neuron.2019.03.028 · Cited by 100 · see citing works

A model for the differentiation between grid and conjunctive units in medial entorhinal cortex

Si, B., & Treves, A. (2013) · Hippocampus · doi:10.1002/hipo.22194 · Cited by 96 · see citing works

Stability of working memory in continuous attractor networks under the control of short-term plasticity

Seeholzer, A., Deger, M., & Gerstner, W. (2019) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1006928 · Cited by 95 · see citing works

Quantitative mRNA imaging throughout the entire Drosophila brain

Long, X., Colonell, J. I., Wong, A. M., Singer, R. H., & Lionnet, T. (2017) · Nature Methods · doi:10.1038/nmeth.4309 · Cited by 91 · see citing works

Ring Attractor Dynamics Emerge from a Spiking Model of the Entire Protocerebral Bridge

Kakaria, K. S., & de Bivort, B. L. (2017) · Frontiers in Behavioral Neuroscience · doi:10.3389/fnbeh.2017.00008 · Cited by 89 · see citing works

Visual Targeting of Motor Actions in Climbing Drosophila

Triphan, T., Poeck, B., Neuser, K., & Strauß, R. (2010) · Current Biology · doi:10.1016/j.cub.2010.02.055 · Cited by 85 · see citing works

Cellular Basis of Head Direction and Contextual Cues in the Insect Brain

Varga, A. G., & Ritzmann, R. E. (2016) · Current Biology · doi:10.1016/j.cub.2016.05.037 · Cited by 77 · see citing works

The Head-Direction Signal Plays a Functional Role as a Neural Compass during Navigation

Butler, W. N., Smith, K. S., van der Meer, M. A. A., & Taube, J. S. (2017) · Current Biology · doi:10.1016/j.cub.2017.03.033 · Cited by 77 · see citing works

Emergent elasticity in the neural code for space

Ocko, S. A., Hardcastle, K., Giocomo, L. M., & Ganguli, S. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1805959115 · Cited by 76 · see citing works

Neuronal constituents and putative interactions within the Drosophila Ellipsoid Body Neuropil

Omoto, J. J., Nguyen, B.-C. M., Kandimalla, P., Lovick, J. K., Donlea, J. M., & Hartenstein, V. (2018) · Frontiers in Neural Circuits · doi:10.3389/fncir.2018.00103 · Cited by 72 · see citing works

Landmark-Based Updating of the Head Direction System by Retrosplenial Cortex: A Computational Model

Page, H. J. I., & Jeffery, K. J. (2018) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2018.00191 · Cited by 71 · see citing works

Cohesiveness of spatial and directional representations recorded from neural ensembles in the anterior thalamus, parasubiculum, medial entorhinal cortex, and hippocampus

Hargreaves, E. L., Yoganarasimha, D., & Knierim, J. J. (2007) · Hippocampus · doi:10.1002/hipo.20316 · Cited by 67 · see citing works

Distribution of metabotropic receptors of serotonin, dopamine, GABA, glutamate, and short neuropeptide F in the central complex of Drosophila

Kahsai, L., Carlsson, M. A., Winther, Å. M. E., & Nässel, D. R. (2012) · Neuroscience · doi:10.1016/j.neuroscience.2012.02.007 · Cited by 65 · see citing works

Computing with Continuous Attractors: Stability and Online Aspects

Wu, S., & Амари, Ш.-И. (2005) · Neural Computation · doi:10.1162/0899766054615626 · Cited by 62 · see citing works

Parallel encoding of recent visual experience and self-motion during navigation in Drosophila

Shiozaki, H. M., & Kazama, H. (2017) · Nature Neuroscience · doi:10.1038/nn.4628 · Cited by 60 · see citing works

Drosophila SLC5A11 Mediates Hunger by Regulating K+ Channel Activity

Park, J.-Y., Dus, M., Kim, S., Farhan, A., Kanai, M. I., Rudy, B., & Suh, G. S. B. (2016) · Current Biology · doi:10.1016/j.cub.2016.05.076 · Cited by 59 · see citing works

Microglomerular Synaptic Complexes in the Sky-Compass Network of the Honeybee Connect Parallel Pathways from the Anterior Optic Tubercle to the Central Complex

Held, M., Berz, A., Hensgen, R., Muenz, T. S., Scholl, C., Rößler, W., Homberg, U., & Pfeiffer, K. (2016) · Frontiers in Behavioral Neuroscience · doi:10.3389/fnbeh.2016.00186 · Cited by 57 · see citing works

Cell types and coincident synapses in the ellipsoid body of Drosophila

Martín‐Peña, A., Acebes, Á., Rodríguez, J., Chevalier, V., Casas‐Tintó, S., Triphan, T., Strauß, R., & Ferrús, A. (2014) · European Journal of Neuroscience · doi:10.1111/ejn.12537 · Cited by 54 · see citing works

Visual Working Memory Requires Permissive and Instructive NO/cGMP Signaling at Presynapses in the Drosophila Central Brain

Kuntz, S., Poeck, B., & Strauß, R. (2017) · Current Biology · doi:10.1016/j.cub.2016.12.056 · Cited by 52 · see citing works

A computational model of the integration of landmarks and motion in the insect central complex

Cope, A. J., Sabo, C., Vasilaki, E., Barron, A. B., & Marshall, J. A. R. (2017) · PLOS ONE · doi:10.1371/journal.pone.0172325 · Cited by 51 · see citing works

The laminar organization of the Drosophila ellipsoid body is semaphorin-dependent and prevents the formation of ectopic synaptic connections

Xie, X., Tabuchi, M., Brown, M. P., Mitchell, S. P., Wu, M. N., & Kolodkin, A. L. (2017) · eLife · doi:10.7554/elife.25328 · Cited by 46 · see citing works

Two Clusters of GABAergic Ellipsoid Body Neurons Modulate Olfactory Labile Memory inDrosophila

Zhang, Z., Li, X., Guo, J., Li, Y., & Guo, A. (2013) · Journal of Neuroscience · doi:10.1523/jneurosci.5365-12.2013 · Cited by 42 · see citing works

Coupled symmetric and asymmetric circuits underlying spatial orientation in fruit flies

Su, T.-S., Lee, W. A., Huang, Y.-C., Wang, C.-T., & Lo, C. (2017) · Nature Communications · doi:10.1038/s41467-017-00191-6 · Cited by 42 · see citing works

Mapping Neurotransmitter Identity in the Whole-Mount Drosophila Brain Using Multiplex High-Throughput Fluorescence in Situ Hybridization

Meissner, G. W., Nern, A., Singer, R. H., Wong, A. M., Malkesman, O., & Long, X. (2018) · Genetics · doi:10.1534/genetics.118.301749 · Cited by 40 · see citing works

Second-Generation Drosophila Chemical Tags: Sensitivity, Versatility, and Speed

Sutcliffe, B., Ng, J., Auer, T. O., Pasche, M., Benton, R., Jefferis, G. S. X. E., & Cachero, S. (2017) · Genetics · doi:10.1534/genetics.116.199281 · Cited by 38 · see citing works

The central complex of the flesh fly, Neobellieria bullata: Recordings and morphologies of protocerebral inputs and small‐field neurons

Phillips‐Portillo, J. (2012) · The Journal of Comparative Neurology · doi:10.1002/cne.23134 · Cited by 33 · see citing works

GABA immunostaining in the central complex of dicondylian insects

Homberg, U., Humberg, T., Seyfarth, J., Bode, K., & Pérez, M. Q. (2018) · The Journal of Comparative Neurology · doi:10.1002/cne.24497 · Cited by 29 · see citing works

Drosophila Acquires a Long-Lasting Body-Size Memory from Visual Feedback

Krause, T., Spindler, L., Poeck, B., & Strauß, R. (2019) · Current Biology · doi:10.1016/j.cub.2019.04.037 · Cited by 29 · see citing works

Age-dependent failure of axon regeneration in organotypic culture of gerbil auditory midbrain

Hafidi, A., Lanjun, G., & Sanes, D. H. (1999) · Journal of Neurobiology · doi:10.1002/(sici)1097-4695(19991105)41:2 · Cited by 26 · see citing works

Methods to investigate the structure and connectivity of the nervous system

Lee, D., Huang, T.-H., Cruz, A. D. L., Callejas-Marín, A., & Lois, C. (2017) · Fly · doi:10.1080/19336934.2017.1295189 · Cited by 16 · see citing works

Coordination through Inhibition: Control of Stabilizing and Updating Circuits in Spatial Orientation Working Memory

Han, R., Huang, H.-P., Chuang, C.-L., Yen, H.-H., Kao, W.-T., Chang, H.-Y., & Lo, C. (2021) · eNeuro · doi:10.1523/eneuro.0537-20.2021 · Cited by 12 · see citing works

The population dynamics of a canonical cognitive circuitPreprint

Chaudhuri, R., Gerçek, B., Pandey, B., Peyrache, A., & Fiete, I. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/516021 · Cited by 10 · see citing works

Ultrastructure of GABA- and Tachykinin-Immunoreactive Neurons in the Lower Division of the Central Body of the Desert Locust

Homberg, U., & Müller, M. C. M. (2016) · Frontiers in Behavioral Neuroscience · doi:10.3389/fnbeh.2016.00230 · Cited by 9 · see citing works

Author response: Angular velocity integration in a fly heading circuit

Turner‐Evans, D. B., Wegener, S., Rouault, H., Franconville, R., Wolff, T., Seelig, J. D., Druckmann, S., & Jayaraman, V. (2017) · eLife · doi:10.7554/elife.23496.031 · Cited by 5 · see citing works

SPARC: a method to genetically manipulate precise proportions of cellsPreprint

Isaacman-Beck, J., Paik, K. C., Wienecke, C. F. R., Yang, H. H., Fisher, Y. E., Wang, I. E., Ishida, I. G., Maimon, G., Wilson, R. I., & Clandinin, T. R. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/788679 · Cited by 4 · see citing works

Author response: Building a functional connectome of the Drosophila central complex

Franconville, R., Beron, C. C., & Jayaraman, V. (2018) · eLife · doi:10.7554/elife.37017.030 · Cited by 4 · see citing works

Coordination through inhibition: control of stabilizing and updating circuits in spatial orientation working memoryPreprint

Han, R., Huang, H.-P., Chuang, C.-L., Yen, H.-H., Kao, W.-T., Chang, H.-Y., & Lo, C. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/819185 · Cited by 2 · see citing works

Author response: Synaptic transmission parallels neuromodulation in a central food-intake circuit

Schlegel, P., Texada, M. J., Miroschnikow, A., Schoofs, A., Hückesfeld, S., Peters, M., Schneider-Mizell, C. M., Lacin, H., Li, F., Fetter, R. D., et al. (2016) · eLife · doi:10.7554/elife.16799.024 · Cited by 2 · see citing works

Author response: The laminar organization of the Drosophila ellipsoid body is semaphorin-dependent and prevents the formation of ectopic synaptic connections

Xie, X., Tabuchi, M., Brown, M. P., Mitchell, S. P., Wu, M. N., & Kolodkin, A. L. (2017) · eLife · doi:10.7554/elife.25328.029 · Cited by 2 · see citing works

Author response: Nitric oxide acts as a cotransmitter in a subset of dopaminergic neurons to diversify memory dynamics

Aso, Y., Ray, R. P., Long, X., Bushey, D., Cichewicz, K., Ngo, T.-T. B., Sharp, B., Christoforou, C. P., Hu, A., Lemire, A. L., et al. (2019) · eLife · doi:10.7554/elife.49257.sa2 · Cited by 1 · see citing works

A connectome and analysis of the adult Drosophila central brain

Scheffer, L. K., Xu, C. S., Januszewski, M., Lu, Z., Takemura, S.-Y., Hayworth, K. J., Huang, G. B., Shinomiya, K., Maitlin-Shepard, J., Berg, S., et al. (2020) · eLife · doi:10.7554/elife.57443 · Cited by 1,128 · see citing works

A connectome of the Drosophila central complex reveals network motifs suitable for flexible navigation and context-dependent action selection

Hulse, B. K., Haberkern, H., Franconville, R., Turner-Evans, D., Takemura, S.-Y., Wolff, T., Noorman, M., Dreher, M., Dan, C., Parekh, R., et al. (2021) · eLife · doi:10.7554/elife.66039 · Cited by 392 · see citing works

Attractor and integrator networks in the brain

Khona, M., & Fiete, I. (2022) · Nature reviews. Neuroscience · doi:10.1038/s41583-022-00642-0 · Cited by 314 · see citing works

Neurotransmitter classification from electron microscopy images at synaptic sites in Drosophila melanogaster

Eckstein, N., Bates, A. S., Champion, A., Du, M., Yin, Y., Schlegel, P., Lu, A. K.-Y., Rymer, T., Finley-May, S., Paterson, T., et al. (2024) · Cell · doi:10.1016/j.cell.2024.03.016 · Cited by 233 · see citing works

Building an allocentric travelling direction signal via vector computation

Lyu, C., Abbott, L. F., & Maimon, G. (2022) · Nature · doi:10.1038/s41586-021-04067-0 · Cited by 215 · see citing works

A unifying perspective on neural manifolds and circuits for cognition

Langdon, C., Genkin, M., & Engel, T. A. (2023) · Nature reviews. Neuroscience · doi:10.1038/s41583-023-00693-x · Cited by 210 · see citing works

Mechanisms Underlying the Neural Computation of Head Direction

Hulse, B. K., & Jayaraman, V. (2020) · Annual Review of Neuroscience · doi:10.1146/annurev-neuro-072116-031516 · Cited by 130 · see citing works

Neurotransmitter Classification from Electron Microscopy Images at Synaptic Sites in Drosophila Melanogaster

Eckstein, N., Bates, A. S., Champion, A., Du, M., Yin, Y., Schlegel, P., Lu, A. K.-Y., Rymer, T., Finley-May, S., Paterson, T., et al. (2020) · doi:10.1101/2020.06.12.148775 · Cited by 115 · see citing works

The neural basis for a persistent internal state in Drosophila females

Deutsch, D., Pacheco, D., Encarnacion-Rivera, L., Pereira, T., Fathy, R., Clemens, J., Girardin, C., Calhoun, A., Ireland, E., Burke, A., et al. (2020) · eLife · doi:10.7554/elife.59502 · Cited by 115 · see citing works

A visual pathway for skylight polarization processing in Drosophila

Hardcastle, B. J., Omoto, J. J., Kandimalla, P., Nguyen, B.-C. M., Keleş, M. F., Boyd, N. K., Hartenstein, V., & Frye, M. A. (2021) · eLife · doi:10.7554/elife.63225 · Cited by 111 · see citing works

Converting an allocentric goal into an egocentric steering signal

Mussells Pires, P., Zhang, L., Parache, V., Abbott, L. F., & Maimon, G. (2024) · Nature · doi:10.1038/s41586-023-07006-3 · Cited by 110 · see citing works

A decentralised neural model explaining optimal integration of navigational strategies in insects

Sun, X., Yue, S., & Mangan, M. (2020) · eLife · doi:10.7554/elife.54026 · Cited by 96 · see citing works

Transforming a head direction signal into a goal-oriented steering command

Westeinde, E. A., Kellogg, E., Dawson, P. M., Lu, J., Hamburg, L., Midler, B., Druckmann, S., & Wilson, R. I. (2024) · Nature · doi:10.1038/s41586-024-07039-2 · Cited by 85 · see citing works

The head direction circuit of two insect species

Pisokas, I., Heinze, S., & Webb, B. (2020) · eLife · doi:10.7554/elife.53985 · Cited by 84 · see citing works

Theory of the Multiregional Neocortex: Large-Scale Neural Dynamics and Distributed Cognition

Wang, X.-J. (2022) · Annual Review of Neuroscience · doi:10.1146/annurev-neuro-110920-035434 · Cited by 83 · see citing works

Dopamine promotes head direction plasticity during orienting movements

Fisher, Y. E., Marquis, M., D’Alessandro, I., & Wilson, R. I. (2022) · Nature · doi:10.1038/s41586-022-05485-4 · Cited by 67 · see citing works

A projectome of the bumblebee central complex

Sayre, M. E., Templin, R., Chávez, J., Kempenaers, J., & Heinze, S. (2021) · eLife · doi:10.7554/elife.68911 · Cited by 75 · see citing works

Flexible navigational computations in the Drosophila central complex

Fisher, Y. E. (2022) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2021.12.001 · Cited by 74 · see citing works

Local shape descriptors for neuron segmentation

Sheridan, A., Nguyen, T., Deb, D., Lee, W.-C. A., Saalfeld, S., Turaga, S. C., Manor, U., & Funke, J. (2022) · Nature Methods · doi:10.1038/s41592-022-01711-z · Cited by 72 · see citing works

Visual processing in the fly, from photoreceptors to behavior

Currier, T. A., Pang, M. M., & Clandinin, T. R. (2023) · GENETICS · doi:10.1093/genetics/iyad064 · Cited by 63 · see citing works

Encoding and control of orientation to airflow by a set of Drosophila fan-shaped body neurons

Currier, T. A., Matheson, A. M. M., & Nagel, K. I. (2020) · eLife · doi:10.7554/elife.61510 · Cited by 60 · see citing works

A set of hub neurons and non-local connectivity features support global brain dynamics in C. elegans

Uzel, K., Kato, S., & Zimmer, M. (2022) · Current Biology · doi:10.1016/j.cub.2022.06.039 · Cited by 54 · see citing works

A connectome of the <i>Drosophila</i> central complex reveals network motifs suitable for flexible navigation and context-dependent action selection

Hulse, B. K., Haberkern, H., Franconville, R., Turner-Evans, D. B., Takemura, S., Wolff, T., Noorman, M., Dreher, M., Dan, C., Parekh, R., et al. (2020) · doi:10.1101/2020.12.08.413955 · Cited by 392 · see citing works

A neural circuit architecture for rapid learning in goal-directed navigation

Dan, C., Hulse, B. K., Kappagantula, R., Jayaraman, V., & Hermundstad, A. M. (2024) · Neuron · doi:10.1016/j.neuron.2024.04.036 · Cited by 51 · see citing works

Connectomic reconstruction predicts visual features used for navigation

Garner, D., Kind, E., Lai, J. Y. H., Nern, A., Zhao, A., Houghton, L., Sancer, G., Wolff, T., Rubin, G. M., Wernet, M. F., et al. (2024) · Nature · doi:10.1038/s41586-024-07967-z · Cited by 44 · see citing works

The head direction cell network: attractor dynamics, integration within the navigation system, and three-dimensional properties

Angelaki, D. E., & Laurens, J. (2019) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2019.12.002 · Cited by 45 · see citing works

A line attractor encoding a persistent internal state requires neuropeptide signaling

Mountoufaris, G., Nair, A., Yang, B., Kim, D.-W., Vinograd, A., Kim, S., Linderman, S. W., & Anderson, D. J. (2024) · Cell · doi:10.1016/j.cell.2024.08.015 · Cited by 48 · see citing works

Neural networks for navigation: From connections to computations

Wilson, R. I. (2023) · Annual Review of Neuroscience · doi:10.1146/annurev-neuro-110920-032645 · Cited by 38 · see citing works

Bayesian inference in ring attractor networks

Kutschireiter, A., Basnak, M. A., Wilson, R. I., & Drugowitsch, J. (2023) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2210622120 · Cited by 36 · see citing works

The fly connectome reveals a path to the effectome

Pospisil, D. A., Aragon, M. J., Dorkenwald, S., Matsliah, A., Sterling, A. R., Schlegel, P., Yu, S.-C., McKellar, C. E., Costa, M., Eichler, K., et al. (2024) · Nature · doi:10.1038/s41586-024-07982-0 · Cited by 36 · see citing works

Lineages to circuits: the developmental and evolutionary architecture of information channels into the central complex

Kandimalla, P., Omoto, J. J., Hong, E. J., & Hartenstein, V. (2023) · Journal of Comparative Physiology A · doi:10.1007/s00359-023-01616-y · Cited by 38 · see citing works

Maintaining and updating accurate internal representations of continuous variables with a handful of neurons

Noorman, M., Hulse, B. K., Jayaraman, V., Romani, S., & Hermundstad, A. M. (2024) · Nature Neuroscience · doi:10.1038/s41593-024-01766-5 · Cited by 31 · see citing works

The sky compass network in the brain of the desert locust

Homberg, U., Hensgen, R., Jahn, S., Pegel, U., Takahashi, N., Zittrell, F., & Pfeiffer, K. (2022) · Journal of Comparative Physiology A · doi:10.1007/s00359-022-01601-x · Cited by 34 · see citing works

Neural circuits for goal-directed navigation across species

Basu, J., & Nagel, K. I. (2024) · Trends in Neurosciences · doi:10.1016/j.tins.2024.09.005 · Cited by 33 · see citing works

A split-GAL4 driver line resource for Drosophila neuron typesPreprint

Meissner, G. W., Vannan, A., Jeter, J., Close, K. C., DePasquale, G. M., Dorman, Z., Forster, K., Beringer, J. A., Gibney, T. V., Hausenfluck, J. H., et al. (2024) · eLife · doi:10.7554/elife.98405.3 · Cited by 52 · see citing works

The neuroethology of ant navigation

Collett, T. S., Graham, P., & Heinze, S. (2025) · Current Biology · doi:10.1016/j.cub.2024.12.034 · Cited by 34 · see citing works

Distributed control circuits across a brain-and-cord connectome

Bates, A. S., Phelps, J. S., Kim, M., Yang, H. H., Matsliah, A., Ajabi, Z., Perlman, E., Delgado, K. M., Osman, M. A. M., Salmon, C. K., et al. (2026) · Nature · doi:10.1038/s41586-026-10735-w · Cited by 62 · see citing works

Neuronal birthdate reveals topography in a vestibular brainstem circuit for gaze stabilization

Goldblatt, D., Huang, S., Greaney, M. R., Hamling, K. R., Voleti, V., Campos, C. P., Patel, K., Li, W., Hillman, E. M. C., Bagnall, M. W., et al. (2023) · Current Biology · doi:10.1016/j.cub.2023.02.048 · Cited by 26 · see citing works

Valeric Acid: A Gut-Derived Metabolite as a Potential Epigenetic Modulator of Neuroinflammation in the Gut–Brain Axis

Paciolla, C., Manganelli, M., Chiano, M. D., Montenegro, F., Gallone, A., Sallustio, F., & Guida, G. (2025) · Cells · doi:10.3390/cells14221823 · Cited by 32 · see citing works

From Photons to Behaviors: Neural Implementations of Visual Behaviors in Drosophila

Ryu, L., Kim, S. Y., & Kim, A. J. (2022) · Frontiers in Neuroscience · doi:10.3389/fnins.2022.883640 · Cited by 29 · see citing works

Learning accurate path integration in ring attractor models of the head direction system

Vafidis, P., Owald, D., D’Albis, T., & Kempter, R. (2022) · eLife · doi:10.7554/elife.69841 · Cited by 25 · see citing works

Predicting modular functions and neural coding of behavior from a synaptic wiring diagram

Vishwanathan, A., Sood, A., Wu, J., Ramirez, A. D., Yang, R., Kemnitz, N., Ih, D., Turner, N., Lee, K., Tartavull, I., et al. (2024) · Nature Neuroscience · doi:10.1038/s41593-024-01784-3 · Cited by 25 · see citing works

Complex computation from developmental priors

Barabási, D. L., Beynon, T., Katona, Á., & Perez-Nieves, N. (2023) · Nature Communications · doi:10.1038/s41467-023-37980-1 · Cited by 25 · see citing works

Geometric framework to predict structure from function in neural networks

Tirthabir Biswas, A., & Fitzgerald, J. E. (2022) · Physical Review Research · doi:10.1103/physrevresearch.4.023255 · Cited by 22 · see citing works

The conserved RNA-binding protein Imp is required for the specification and function of olfactory navigation circuitry in Drosophila

Hamid, A., Gattuso, H., Caglar, A. N., Pillai, M., Steele, T., Gonzalez, A., Nagel, K., & Syed, M. H. (2024) · Current Biology · doi:10.1016/j.cub.2023.12.020 · Cited by 24 · see citing works

A rotational velocity estimate constructed through visuomotor competition updates the fly’s neural compassPreprint

Hulse, B. K., Stanoev, A., Turner‐Evans, D. B., Seelig, J. D., & Jayaraman, V. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.09.25.559373 · Cited by 20 · see citing works

Automatic Detection of Synaptic Partners in a Whole-Brain <i>Drosophila</i> EM Dataset

Buhmann, J., Sheridan, A., Gerhard, S., Krause, R., Nguyen, T., Heinrich, L., Schlegel, P., Lee, W.-C. A., Wilson, R., Saalfeld, S., et al. (2019) · doi:10.1101/2019.12.12.874172 · Cited by 21 · see citing works

Distinct manifold encoding of navigational information in the subiculum and hippocampus

Nakai, S., Kitanishi, T., & Mizuseki, K. (2024) · Science Advances · doi:10.1126/sciadv.adi4471 · Cited by 20 · see citing works

Weighting of Celestial and Terrestrial Cues in the Monarch Butterfly Central Complex

Nguyen, T. A., Beetz, M. J., Merlin, C., Pfeiffer, K., & el Jundi, B. (2022) · Frontiers in Neural Circuits · doi:10.3389/fncir.2022.862279 · Cited by 20 · see citing works

A conditional GABAergic synaptic vesicle marker for Drosophila

Certel, S. J., McCabe, B. D., & Stowers, R. S. (2022) · Journal of Neuroscience Methods · doi:10.1016/j.jneumeth.2022.109540 · Cited by 19 · see citing works

SAMPL is a high-throughput solution to study unconstrained vertical behavior in small animals

Zhu, Y., Auer, F., Gelnaw, H., Davis, S. N., Hamling, K. R., May, C. E., Ahamed, H., Ringstad, N., Nagel, K. I., & Schoppik, D. (2023) · Cell Reports · doi:10.1016/j.celrep.2023.112573 · Cited by 17 · see citing works

Pynapple, a toolbox for data analysis in neuroscience

Viejo, G. D., Levenstein, D., Carrasco, S. S., Mehrotra, D., Mahallati, S., Vite, G. R., Denny, H., Sjulson, L., Battaglia, F. P., & Peyrache, A. (2023) · eLife · doi:10.7554/elife.85786 · Cited by 18 · see citing works

An insect-inspired model facilitating autonomous navigation by incorporating goal approaching and collision avoidance

Sun, X., Fu, Q., Peng, J., & Yue, S. (2023) · Neural Networks · doi:10.1016/j.neunet.2023.05.033 · Cited by 18 · see citing works

Untitled work

Feng (2024) · doi:10.1101/2024.06.27.601106 · Cited by 18 · see citing works

Neural mechanisms of emotions, alexithymia, and depression

Nadeau, S. E. (2021) · Handbook of clinical neurology · doi:10.1016/b978-0-12-822290-4.00014-1 · Cited by 18 · see citing works

Integration of sleep homeostasis and navigation in Drosophila

Flores-Valle, A., Gonçalves, P. J., & Seelig, J. D. (2021) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1009088 · Cited by 14 · see citing works

Single nuclei RNA-sequencing of adult brain neurons derived from type 2 neuroblasts reveals transcriptional complexity in the insect central complexPreprint

Epiney, D., Chaya, G. N. M., Dillon, N. R., Lai, S.-L., & Doe, C. Q. (2025) · eLife · doi:10.1101/2023.12.10.571022 · Cited by 16 · see citing works

Ring neurons in the Drosophila central complex act as a rheostat for sensory modulation of aging

Gendron, C. M., Chakraborty, T. S., Duran, C., Dono, T., & Pletcher, S. D. (2023) · PLoS Biology · doi:10.1371/journal.pbio.3002149 · Cited by 14 · see citing works

The influence of stimulus history on directional coding in the monarch butterfly brain

Beetz, M. J., & el Jundi, B. (2023) · Journal of Comparative Physiology A · doi:10.1007/s00359-023-01633-x · Cited by 14 · see citing works

Integration of optic flow into the sky compass network in the brain of the desert locust

Zittrell, F., Pabst, K., Carlomagno, E., Rosner, R., Pegel, U., Endres, D., & Homberg, U. (2023) · Frontiers in Neural Circuits · doi:10.3389/fncir.2023.1111310 · Cited by 14 · see citing works

Predicting modular functions and neural coding of behavior from a synaptic wiring diagramPreprint

Vishwanathan, A., Ramirez, A. D., Wu, J., Sood, A., Yang, R., Kemnitz, N., Ih, D., Turner, N. L., Lee, K., Tartavull, I., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.10.28.359620 · Cited by 14 · see citing works

Neuronal calcium spikes enable vector inversion in the Drosophila brain

Ishida, I. G., Sethi, S., Mohren, T. L., Haraguchi, M., Abbott, L. F., & Maimon, G. (2025) · Cell · doi:10.1016/j.cell.2025.11.040 · Cited by 11 · see citing works

Dopamine Modulation of Drosophila Ellipsoid Body Neurons, a Nod to the Mammalian Basal Ganglia

Frighetto, G., Zordan, M. A., Castiello, U., Megighian, A., & Martin, J. (2022) · Frontiers in Physiology · doi:10.3389/fphys.2022.849142 · Cited by 12 · see citing works

A competitive disinhibitory network for robust optic flow processing in DrosophilaPreprint

Erginkaya, M., Cruz, T. L., Brotas, M., Steck, K., Nern, A., Torrão, F., Varela, N., Bock, D. D., Reiser, M. B., & Chiappe, M. E. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.08.06.552150 · Cited by 12 · see citing works

Seven-up acts in neuroblasts to specify adult central complex neuron identity and initiate neuroblast decommissioning

Dillon, N. R., Manning, L., Hirono, K., & Doe, C. Q. (2024) · Development · doi:10.1242/dev.202504 · Cited by 11 · see citing works

Receptive field structures for two celestial compass cues at the input stage of the central complex in the locust brain

Takahashi, N., Zittrell, F., Hensgen, R., & Homberg, U. (2022) · Journal of Experimental Biology · doi:10.1242/jeb.243858 · Cited by 11 · see citing works

Distribution and daily oscillation of GABA in the circadian system of the cockroach Rhyparobia maderae

Massah, A., Neupert, S., Brodesser, S., Homberg, U., & Stengl, M. (2021) · The Journal of Comparative Neurology · doi:10.1002/cne.25244 · Cited by 10 · see citing works

Correlative light and electron microscopy identifies circuit motifs underlying processing of noisy visual motion in larval zebrafishPreprint

Boulanger-Weill, J., Kämpf, F., Schuhknecht, G. F. P., Schalek, R. L., Garza, R., Petkova, M. D., Vohra, S. K., Wu, Y., Savaliya, J. H., Tiller, R., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.03.14.643363 · Cited by 8 · see citing works

Navigating Like a Fly: Drosophila melanogaster as a Model to Explore the Contribution of Serotonergic Neurotransmission to Spatial Navigation

Gajardo, I., Guerra, S., & Campusano, J. M. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24054407 · Cited by 10 · see citing works

A high-resolution atlas of the brain predicts lineage and birth order underlying neuronal identity

Allen, A. M., Neville, M. C., Nojima, T., Alejevski, F., Agarwal, D., Sims, D., & Goodwin, S. F. (2025) · Cell Genomics · doi:10.1016/j.xgen.2025.101103 · Cited by 9 · see citing works

Beyond Cognitive Templates: Re-Examining Template Metaphors Used for Animal Recognition and Navigation

Sung, J. Y., Harris, O. K., Hensley, N. M., Chemero, A. P., & Morehouse, N. I. (2021) · Integrative and Comparative Biology · doi:10.1093/icb/icab040 · Cited by 8 · see citing works

Pynapple, a toolbox for data analysis in neurosciencePreprint

Viejo, G. D., Levenstein, D., Carrasco, S. S., Mehrotra, D., Mahallati, S., Vite, G. R., Denny, H., Sjulson, L., Battaglia, F. P., & Peyrache, A. (2023) · eLife · doi:10.7554/elife.85786.2 · Cited by 8 · see citing works

Neuropeptide Signaling is Required to Implement a Line Attractor Encoding a Persistent Internal Behavioral StatePreprint

Mountoufaris, G., Nair, A., Yang, B., Kim, D., & Anderson, D. J. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.11.01.565073 · Cited by 8 · see citing works

Castor is a temporal transcription factor that specifies early born central complex neuron identity

Dillon, N. R., & Doe, C. Q. (2024) · Development · doi:10.1242/dev.204318 · Cited by 7 · see citing works

Myoinhibitory peptides in the central complex of the locust Schistocerca gregaria and colocalization with locustatachykinin‐related peptides

Hensgen, R., Dippel, S., Hümmert, S., Jahn, S., Seyfarth, J., & Homberg, U. (2022) · The Journal of Comparative Neurology · doi:10.1002/cne.25374 · Cited by 7 · see citing works

Neuronal circuit mechanisms of competitive interaction between action-based and coincidence learning

Rozenfeld, E., & Parnas, M. (2024) · Science Advances · doi:10.1126/sciadv.adq3016 · Cited by 10 · see citing works

A historical perspective on the insect central complex: Anatomy, development, and function

Gillet, V., Kluge, J., & Patel, R. N. (2025) · Molecular Psychology Brain Behavior and Society · doi:10.12688/molpsychol.17564.3 · Cited by 6 · see citing works

A mechanistic theory of planning in prefrontal cortex

Jensen, K. T., Doohan, P. T., Sablé-Meyer, M., Reinert, S., Baram, A. B., Sahani, M., Akam, T. E., & Behrens, T. E. J. (2026) · eLife · doi:10.7554/elife.109757.3 · Cited by 6 · see citing works

Autoencoder networks extract latent variables and encode these variables in their connectomes

Farrell, M., Recanatesi, S., Reid, R. C., Mihalaş, Ş., & Shea‐Brown, E. (2020) · Neural Networks · doi:10.1016/j.neunet.2021.03.010 · Cited by 6 · see citing works

Dynamical self-organization and efficient representation of space by grid cells

DiTullio, R. W., & Balasubramanian, V. (2021) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2021.11.007 · Cited by 6 · see citing works

The neural computation of affective internal states in the hypothalamus: A dynamical systems perspective

Nair, A., Vinograd, A., Liu, M., Mountoufaris, G., Linderman, S. W., & Anderson, D. J. (2025) · Neuron · doi:10.1016/j.neuron.2025.11.003 · Cited by 5 · see citing works

Global inhibition in head-direction neural circuits: a systematic comparison between connectome-based spiking neural circuit models

Chang, N., Huang, H.-P., & Lo, C. (2023) · Journal of Comparative Physiology A · doi:10.1007/s00359-023-01615-z · Cited by 5 · see citing works

Stem cell-specific ecdysone signaling regulates the development and function of a Drosophila sleep homeostatPreprint

Wani, A. R., Chowdhury, B., Luong, J., Chaya, G. N. M., Patel, K., Isaacman-Beck, J., Shafer, O. T., Kayser, M. S., & Syed, M. H. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.09.29.560022 · Cited by 5 · see citing works

eLife Assessment: A split-GAL4 driver line resource for Drosophila CNS cell types

Reis, T. (2024) · eLife · doi:10.7554/elife.98405.1.sa4 · Cited by 5 · see citing works

A split-GAL4 driver line resource for Drosophila CNS cell typesPreprint

Meissner, G. W., Vannan, A., Jeter, J., Close, K. C., DePasquale, G. M., Dorman, Z., Forster, K., Beringer, J. A., Gibney, T. V., Hausenfluck, J. H., et al. (2024) · eLife · doi:10.7554/elife.98405.1 · Cited by 5 · see citing works

Explicit error coding can mediate gain recalibration in continuous bump attractor networks

Secer, G., Knierim, J. J., & Cowan, N. J. (2025) · Nature Communications · doi:10.1038/s41467-025-63817-0 · Cited by 6 · see citing works

Theoretical principles explain the structure of the insect head direction circuit

Aceituno, P. V., Dall’Osto, D., & Pisokas, I. (2024) · eLife · doi:10.7554/elife.91533 · Cited by 6 · see citing works

Stem cell-specific ecdysone signaling regulates the development of dorsal fan-shaped body neurons and sleep homeostasis

Wani, A. R., Chowdhury, B., Luong, J., Chaya, G. N. M., Patel, K., Isaacman-Beck, J., Kayser, M. S., & Syed, M. H. (2024) · Current Biology · doi:10.1016/j.cub.2024.09.020 · Cited by 4 · see citing works

Reverse Engineering and Robotics as Tools for Analyzing Neural Circuits

Pisokas, I. (2021) · Frontiers in Neurorobotics · doi:10.3389/fnbot.2020.578803 · Cited by 4 · see citing works

Neuroscience: Fish and fly headed in the same direction

Heinze, S. (2023) · Current Biology · doi:10.1016/j.cub.2023.05.006 · Cited by 4 · see citing works

Plasticity between visual input pathways and the head direction system

Kim, S. S. (2021) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2021.08.006 · Cited by 4 · see citing works

Recent approaches to study the neural bases of complex insect behavior

Traner, M., Chandak, R., & Raman, B. (2021) · Current Opinion in Insect Science · doi:10.1016/j.cois.2021.07.004 · Cited by 4 · see citing works

Pynapple: a toolbox for data analysis in neurosciencePreprint

Viejo, G. D., Levenstein, D., Carrasco, S. S., Mehrotra, D., Mahallati, S., Vite, G. R., Denny, H., Sjulson, L., Battaglia, F. P., & Peyrache, A. (2023) · eLife · doi:10.7554/elife.85786.1 · Cited by 4 · see citing works

The RNA-binding protein, Imp specifies olfactory navigation circuitry and behavior in DrosophilaPreprint

Hamid, A., Gattuso, H. C., Caglar, A. N., Pillai, M. V., Steele, T., Gonzalez, A., Nagel, K. I., & Syed, M. H. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.05.26.542522 · Cited by 4 · see citing works

Transcriptional complexity in the insect central complex: single nuclei RNA-sequencing of adult brain neurons derived from type 2 neuroblastsPreprint

Epiney, D., Chaya, G. N. M., Dillon, N. R., Lai, S.-L., & Doe, C. Q. (2025) · eLife · doi:10.7554/elife.105896.1 · Cited by 4 · see citing works

Transcriptional complexity in the insect central complex: single nuclei RNA-sequencing of adult brain neurons derived from type 2 neuroblastsPreprint

Epiney, D., Chaya, G. N. M., Dillon, N. R., Lai, S.-L., & Doe, C. Q. (2025) · eLife · doi:10.7554/elife.105896.2 · Cited by 4 · see citing works

The foraging gene coordinates brain and heart networks to modulate socially cued interval timing in Drosophila

Miao, H., Li, W., Huang, Y., & Kim, W. J. (2025) · PLoS Genetics · doi:10.1371/journal.pgen.1011752 · Cited by 3 · see citing works

From Synapses to Dynamics: Obtaining Function from Structure in a Connectome Constrained Model of the Head Direction Circuit

Duan, S., Dong, L. L., & Fiete, I. (2025) · neural information processing systems · doi:10.52202/085713-4273 · Cited by 3 · see citing works

Estimating orientation in natural scenes: A spiking neural network model of the insect central complex

Stentiford, R., Knight, J. C., Nowotny, T., Philippides, A. O., & Graham, P. (2024) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1011913 · Cited by 3 · see citing works

Neuromorphic Implementation of a Continuous Attractor Neural Network With Various Synaptic Dynamics

You, H., & Zhao, K. (2021) · IEEE Access · doi:10.1109/access.2021.3101290 · Cited by 3 · see citing works

Ring attractor dynamics in the <i>Drosophila</i> central brain

Kim, S. S., Rouault, H., Druckmann, S., & Jayaraman, V. (2017) · Science · doi:10.1126/science.aal4835 · Cited by 417 · see citing works

Mechanisms Underlying the Neural Computation of Head Direction

Hulse, B. K., & Jayaraman, V. (2020) · Annual Review of Neuroscience · doi:10.1146/annurev-neuro-072116-031516 · Cited by 130 · see citing works

Maintaining and updating accurate internal representations of continuous variables with a handful of neurons

Noorman, M., Hulse, B. K., Jayaraman, V., Romani, S., & Hermundstad, A. M. (2024) · Nature Neuroscience · doi:10.1038/s41593-024-01766-5 · Cited by 31 · see citing works

From the fly connectome to exact ring attractor dynamicsPreprint

Tirthabir Biswas, A., Stanoev, A., Romani, S., & Fitzgerald, J. E. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.11.01.621596

A Continuous-Attractor Model of Flip Cell Phenomena

Samsonovich, A. V. (2017) · Advances in intelligent systems and computing · doi:10.1007/978-3-319-63940-6_23 · Cited by 4 · see citing works