Fast model-based estimation of ancestry in unrelated individuals

Alexander, David H., Novembre, John, Lange, Kenneth·2009·Genome Research
DOI 10.1101/gr.094052.109

Cited by (137)

Items 101–137 of 137

  1. Comparing signals of natural selection between three Indigenous North American populations
    Reynolds, Austin W., Mata-Míguez, Jaime, Miró-Herrans, Aida, Briggs-Cloud, Marcus, Sylestine, Ana, Barajas-Olmos, Francisco, Garcia-Ortiz, Humberto, Rzhetskaya, Margarita, Orozco, Lorena, Raff, Jennifer A. et al. · 2019 · Proceedings of the National Academy of Sciences
  2. Signatures of positive selection in African Butana and Kenana dairy zebu cattle
    Bahbahani, Hussain, Salim, Bashir, Almathen, Faisal, Al Enezi, Fahad, Mwacharo, Joram M., Hanotte, Olivier · 2018 · PLOS ONE
  3. The complex geography of domestication of the African rice Oryza glaberrima
    Choi, Jae Young, Zaidem, Maricris, Gutaker, Rafal, Dorph, Katherine, Singh, Rakesh Kumar, Purugganan, Michael D. · 2019 · PLoS Genetics
  4. Extent of linkage disequilibrium in the domestic cat, Felis silvestris catus, and its breeds
    Alhaddad, Hasan, Khan, Razib, Grahn, Robert A., Gandolfi, Barbara, Mullikin, James C., Cole, Shelley A., Gruffydd-Jones, Timothy J., Häggström, Jens, Lohi, Hannes, Longeri, Maria et al. · 2013 · PLoS ONE
  5. Tandem gene duplications contributed to high-level azole resistance in a rapidly expanding Candida tropicalis population
    Fan, Xin, Dai, Rong-Chen, Zhang, Shu, Geng, Yuan-Yuan, Kang, Mei, Guo, Da-Wen, Mei, Ya-Ning, Pan, Yu-Hong, Sun, Zi-Yong, Xu, Ying-Chun et al. · 2023 · Nature Communications
  6. Population history and gene divergence in native Mexicans inferred from 76 human exomes
    Ávila-Arcos, María C, McManus, Kimberly F, Sandoval, Karla, Rodríguez-Rodríguez, Juan Esteban, Villa-Islas, Viridiana, Martin, Alicia R, Luisi, Pierre, Peñaloza-Espinosa, Rosenda I, Eng, Celeste, Huntsman, Scott et al. · 2020 · Molecular Biology and Evolution
  7. Transethnic meta-analysis of rare coding variants in PLCG2, ABI3, and TREM2 supports their general contribution to Alzheimer’s disease
    Dalmasso, Maria Carolina, Brusco, Luis Ignacio, Olivar, Natividad, Muchnik, Carolina, Hanses, Claudia, Milz, Esther, Becker, Julian, Heilmann-Heimbach, Stefanie, Hoffmann, Per, Prestia, Federico A. et al. · 2019 · Translational Psychiatry
  8. The patterns of admixture, divergence, and ancestry of African cattle populations determined from genome-wide SNP data
    Gebrehiwot, N. Z., Strucken, E. M., Aliloo, H., Marshall, K., Gibson, J. P. · 2020 · BMC Genomics
  9. Genetic Ancestry of Rapanui before and after European Contact
    Fehren-Schmitz, Lars, Jarman, Catrine L., Harkins, Kelly M., Kayser, Manfred, Popp, Brian N., Skoglund, Pontus · 2017 · Current Biology
  10. Genome-wide DNA methylation and gene expression patterns reflect genetic ancestry and environmental differences across the Indonesian archipelago
    Natri, Heini M., Bobowik, Katalina S., Kusuma, Pradiptajati, Crenna Darusallam, Chelzie, Jacobs, Guy S., Hudjashov, Georgi, Lansing, J. Stephen, Sudoyo, Herawati, Banovich, Nicholas E., Cox, Murray P. et al. · 2020 · PLoS Genetics
  11. ContamLD: estimation of ancient nuclear DNA contamination using breakdown of linkage disequilibrium
    Nakatsuka, Nathan, Harney, Éadaoin, Mallick, Swapan, Mah, Matthew, Patterson, Nick, Reich, David · 2020 · Genome Biology
  12. Deciphering the Patterns of Genetic Admixture and Diversity in Southern European Cattle Using Genome-Wide SNPs
    Upadhyay, Maulik, Bortoluzzi, Chiara, Barbato, Mario, Ajmone‐Marsan, Paolo, Colli, Licia, Ginja, Catarina, Sonstegard, Tad S., Bosse, Mirte, Lenstra, Johannes A., Groenen, Martien A. M. et al. · 2019 · Evolutionary Applications
  13. Associations of Genetically Predicted Lp(a) (Lipoprotein [a]) Levels With Cardiovascular Traits in Individuals of European and African Ancestry
    Satterfield, Benjamin A., Dikilitas, Ozan, Safarova, Maya S., Clarke, Shoa L., Tcheandjieu, Catherine, Zhu, Xiang, Bastarache, Lisa, Larson, Eric B., Justice, Anne E., Shang, Ning et al. · 2021 · Circulation: Genomic and Precision Medicine
  14. Identification of Candidate Signature Genes and Key Regulators Associated With Trypanotolerance in the Sheko Breed
    Mekonnen, Yonatan Ayalew, Gültas, Mehmet, Effa, Kefena, Hanotte, Olivier, Schmitt, Armin O. · 2019 · Frontiers in Genetics
  15. Genetic architecture of gene regulation in Indonesian populations identifies QTLs associated with global and local ancestries
    Natri, Heini M., Hudjashov, Georgi, Jacobs, Guy, Kusuma, Pradiptajati, Saag, Lauri, Darusallam, Chelzie Crenna, Metspalu, Mait, Sudoyo, Herawati, Cox, Murray P., Gallego Romero, Irene et al. · 2022 · The American Journal of Human Genetics
  16. Global Ancestry and Cognitive Ability
    Lasker, Jordan, Pesta, Bryan J., Fuerst, John G. R., Kirkegaard, Emil O. W. · 2019 · Psych
  17. Whole-Genome Resequencing Reveals Selection Signal Related to Sheep Wool Fineness
    Zhang, Wentao, Jin, Meilin, Li, Taotao, Lu, Zengkui, Wang, Huihua, Yuan, Zehu, Wei, Caihong · 2023 · Animals
  18. Ancient DNA analysis of a nineteenth century tobacco pipe from a Maryland slave quarter
    Schablitsky, Julie M., Witt, Kelsey E., Madrigal, Jazmín Ramos, Ellegaard, Martin R., Malhi, Ripan S., Schroeder, Hannes · 2019 · Journal of Archaeological Science
  19. Genetic Analysis of Thai Cattle Reveals a Southeast Asian Indicine Ancestry
    Wangkumhang, Pongsakorn, Wilantho, Alisa, Shaw, Philip J., Flori, Laurence, Moazami-Goudarzi, Katayoun, Gautier, Mathieu, Duangjinda, Monchai, Assawamakin, Anunchai, Tongsima, Sissades · 2015 · PeerJ
  20. Signatures of Selection in Indigenous Chinese Cattle Genomes Reveal Adaptive Genes and Genetic Variations to Cold Climate
    Huang, Ning, Zhao, Lihong, Wang, Jinpeng, Jiang, Qiang, Ju, Zhihua, Wang, Xiuge, Yang, Chunhong, Gao, Yaping, Wei, Xiaochao, Zhang, Yaran et al. · 2023 · Journal of Animal Science
  21. Population Genetic Structure and Origins of Native Hawaiians in the Multiethnic Cohort Study
    Kim, Sung K., Gignoux, Christopher R., Wall, Jeffrey D., Lum-Jones, Annette, Wang, Hansong, Haiman, Christopher A., Chen, Gary K., Henderson, Brian E., Kolonel, Laurence N., Le Marchand, Loic et al. · 2012 · PLoS ONE
  22. Long-Term Artificial Selection of Hanwoo (Korean) Cattle Left Genetic Signatures for the Breeding Traits and Has Altered the Genomic Structure
    Seo, Dongwon, Lee, Doo Ho, Jin, Shil, Won, Jung Il, Lim, Dajeong, Park, Mina, Kim, Tae Hun, Lee, Hak Kyo, Kim, Sidong, Choi, Inchul et al. · 2022 · Scientific Reports
  23. Selection and Introgression Facilitated the Adaptation of Chinese Native Endangered Cattle in Extreme Environments
    Liu, Xinfeng, Li, Zhaohong, Yan, Yubin, Li, Ye, Wu, Hui, Pei, Jie, Yan, Ping, Yang, Ruolin, Guo, Xian, Lan, Xianyong · 2021 · Evolutionary Applications
  24. An insight into the evolutionary history of Indonesian cattle assessed by whole genome data analysis
    Sudrajad, Pita, Subiharta, Subiharta, Adinata, Yudi, Lathifah, Af’idatul, Lee, Jun Heon, Lenstra, Johannes A., Lee, Seung Hwan · 2020 · PLOS ONE
  25. Whole Genome Sequencing Reveals Signals of Adaptive Admixture in Creole Cattle
    Ben-Jemaa, Slim, Adam, Gabriele, Boussaha, Mekki, Bardou, Philippe, Klopp, Christophe, Mandonnet, Nathalie, Naves, Michel · 2023 · Scientific Reports
  26. Population genomic analyses reveal population structure and major hubs of invasive <i>Anopheles stephensi</i> in the Horn of Africa
    Samake, Jeanne N., Lavretsky, Philip, Gunarathna, Isuru, Follis, Madison, Brown, Joshua I., Ali, Said, Yared, Solomon, Carter, Tamar E. · 2023 · Molecular Ecology
  27. Prevalence of Dysbetalipoproteinemia in the UK Biobank According to Different Diagnostic Criteria
    Paquette, Martine, Trinder, Mark, Guay, Simon-Pierre, Brunham, Liam R, Baass, Alexis · 2025 · The Journal of Clinical Endocrinology &amp; Metabolism
  28. Ancient Rapanui genomes reveal resilience and pre-European contact with the Americas
    Moreno-Mayar, J. Víctor, Sousa da Mota, Bárbara, Higham, Tom, Klemm, Signe, Gorman Edmunds, Moana, Stenderup, Jesper, Iraeta-Orbegozo, Miren, Laborde, Véronique, Heyer, Evelyne, Torres Hochstetter, Francisco et al. · 2024 · Nature
  29. Genomic Insights into the Population History and Adaptive Traits of Latin American Criollo Cattle
    Ward, James A., Ng'ang'a, Said I., Randhawa, Imtiaz A. S., McHugo, Gillian P., O'Grady, John F., Flórez, Julio M., Browne, John A., Pérez O’Brien, Ana M., Landaeta-Hernández, Antonio J., Garcia, Jóse F. et al. · 2024 · Royal Society Open Science
  30. A pathway-centered analysis of pig domestication and breeding in Eurasia
    Leno-Colorado, Jordi, Hudson, Nick J, Reverter, Antonio, Pérez-Enciso, Miguel · 2017 · G3 Genes Genomes Genetics
  31. Genomic Analyses Unveil Helmeted Guinea Fowl (<i>Numida meleagris</i>) Domestication in West Africa
    Shen, Quan-Kuan, Peng, Min-Sheng, Adeola, Adeniyi C, Kui, Ling, Duan, Shengchang, Miao, Yong-Wang, Eltayeb, Nada M, Lichoti, Jacqueline K, Otecko, Newton O, Strillacci, Maria Giuseppina et al. · 2021 · Genome Biology and Evolution
  32. Cross-ancestry comparison of aptamer and antibody protein measures
    Nicholas, Jayna C., Katz, Daniel H., Tahir, Usman A., Debban, Catherine L., Aguet, Francois, Blackwell, Thomas, Bowler, Russell P., Broadaway, K. Alaine, Chen, Jingsha, Clish, Clary B. et al. · 2026 · Nature Communications
  33. Analyses of Neanderthal introgression suggest that Levantine and southern Arabian populations have a shared population history
    Vyas, Deven N., Mulligan, Connie J. · 2019 · American Journal of Physical Anthropology
  34. Rare copy number variants in males and females with childhood attention-deficit/hyperactivity disorder
    Jung, Benjamin, Ahn, Kwangmi, Justice, Cristina, Norman, Luke, Price, Jolie, Sudre, Gustavo, Shaw, Philip · 2023 · Molecular Psychiatry
  35. Genome-wide scan for selection signatures reveals novel insights into the adaptive capacity characteristics in three Chinese cattle breeds
    Wu, Xiaoyun, Pei, Jie, Xiong, Lin, Ge, Qianyun, Bao, Pengjia, Liang, Chunnian, Yan, Ping, Guo, Xian · 2025 · BMC Genomics
  36. FrAnTK: a Frequency-based Analysis ToolKit for efficient exploration of allele sharing patterns in present-day and ancient genomic datasets
    Moreno-Mayar, J Víctor · 2022 · G3 Genes|Genomes|Genetics
  37. Exploring the Genetic Origin of Brazilian Locally Adapted Breeds: Admixture, Population History and Relationship with Portuguese and Indicine Cattle
    Verardo, Lucas Lima, Otto, Pamela Itajara, Machado, Marco Antonio, do Carmo Panetto, João Cláudio, Faza, Daniele Ribeiro de Lima Reis, Alves do Egito, Andréa, Vitorino, Andreia Sofia Martins, Carolino, Maria Inês Carvalho Martins, Carolino, Nuno Pimentel, da Silva, Marcos Vinicius Gualberto Barbosa · 2024 · Livestock Science