Blind Homologous R2R3 Myb Genes Control the Pattern of Lateral Meristem Initiation in Arabidopsis
Open accessAbstract
In seed plants, shoot branching is initiated during postembryonic development by the formation of secondary meristems. These new meristems, which are established between the stem and leaf primordia, develop into vegetative branches or flowers. Thus, the number of axillary meristems has a major impact on plant architecture and reproductive success. This study describes the genetic control of axillary meristem formation in Arabidopsis thaliana by a group of three R2R3 Myb genes, which are homologous to the tomato (Solanum lycopersicum) Blind gene and were designated REGULATORS OF AXILLARY MERISTEMS (RAX). rax mutants show new phenotypes that are characterized by defects in lateral bud formation in overlapping zones along the shoot axis. RAX genes are partially redundant in function and allow a fine-tuning of secondary axis formation. As revealed by monitoring of SHOOT MERISTEMLESS transcript accumulation, the RAX genes control a very early step of axillary meristem initiation. The RAX1 and RAX3 expression domains specifically mark a cell group in the center of the leaf axil from which the axillary meristem develops. Double mutant combinations of lateral suppressor and rax1-3 as well as expression studies suggest that at least two pathways control the initiation of axillary meristems in Arabidopsis.
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18 of 24 cited sources checked · 16 supported · 0 flagged · accuracy not yet measured
- Findingcitation
Proteins of the Bl-related R2R3 Myb subgroup show 76 to 86% sequence identity to Bl within the Myb domain.
“Proteins of this subgroup show 76 to 86% sequence identity to Bl within the Myb domain (Schmitz et al., 2002)”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Schmitz et al., 2002 source
- Premisecitation
The tomato bl phenotype is caused by a loss of function in an R2R3 class Myb gene.
“Molecular characterization revealed that the bl phenotype is caused by a loss of function in an R2R3 class Myb gene (Schmitz et al., 2002).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Schmitz et al., 2002 source
- Premisecitation
In Arabidopsis thaliana, there is considerable variation in the process of axillary meristem formation in different phases of development.
“In Arabidopsis thaliana, different observations suggest that there is considerable variation in the process of axillary meristem formation in different phases of development.”
Quote in the paperNot a substantial claim2 of 3 sources checked - Premisecitation
Similar results have been obtained through the analysis of ls bl double mutants in tomato.
“Similar results have been obtained through the analysis of ls bl double mutants in tomato (Schmitz et al., 2002).”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites Schmitz et al., 2002 source
- Premisecitation
The Arabidopsis LAS gene and its orthologs in tomato and rice are key regulators of axillary meristem formation.
“The Arabidopsis LAS gene (Greb et al., 2003) and its orthologs in tomato (Schumacher et al., 1999) and rice (Li et al., 2003) are key regulators of axillary meristem formation.”
Quote in the paperSubstantial claim2 of 3 sources checked
- Premisecitation
Long and Barton (2000) have shown that STM expression can be used as a marker for axillary meristem development.
“Long and Barton (2000) have shown that STM expression can be used as a marker for axillary meristem development.”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Long and Barton (2000) source
- Premisecitation
The recessive las mutant fails to initiate axillary meristems during vegetative development.
“The recessive las mutant fails to initiate axillary meristems during vegetative development (Greb et al., 2003).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Greb et al., 2003 source
The section ‘LAS controls axillary meristem formation’ states that las mutants do not form axillary meristems during vegetative development. ‘Identification of las mutants’ describes the phenotype in homozygous plants, but our copy does not establish that las is recessive; its explicit use of ‘recessive’ refers to axr1, not las. (LLM, conf=0.84)
Experimental — accuracy not yet measured
- Premisecitation
Like RAX1, the LAS gene is expressed in the zone between leaf primordia and the SAM.
“Like RAX1, the LAS gene is expressed in the zone between leaf primordia and the SAM (Greb et al., 2003).”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites Greb et al., 2003 source
- Findingown data
rax1-3 mutants flowered significantly earlier than the Columbia wild type.
“In addition, these mutants flowered significantly earlier than the Columbia (Col) wild type (Figure 4A, Table 1).”
Quote in the paperNot a substantial claim - Findingown data
Using two different antisense probes, RAX2 transcripts were detected in all cells of the tissues analyzed.
“Using two different antisense probes, we detected RAX2 transcripts in all cells of the tissues analyzed (Figure 6E).”
Quote in the paperNot a substantial claim - Findingown data
In Arabidopsis, a subgroup of R2R3 Myb genes encompassing MYB36, MYB37, MYB38, MYB68, MYB84, and MYB87 shows the highest similarity to the tomato Bl gene.
“BLAST analysis demonstrated that in Arabidopsis, a subgroup of R2R3 Myb genes encompassing MYB36, MYB37, MYB38, MYB68, MYB84, and MYB87 shows the highest similarity to the tomato Bl gene.”
Quote in the paperSubstantial claim - Findingnone given
In long-day conditions, the phenotypic abnormalities of rax1-3 rax2-1 rax3-1 plants were strongly reduced or not detectable.
“In long-day conditions, the phenotypic abnormalities of rax1-3 rax2-1 rax3-1 plants were strongly reduced or not detectable.”
Quote in the paperNot a substantial claim - Findingown data
rax1-3 rax2-1 rax3-1 triple mutants exhibited an almost complete inhibition of axillary bud formation during vegetative development.
“rax1-3 rax2-1 rax3-1 triple mutants exhibited an almost complete inhibition of axillary bud formation during vegetative development (Figures 4O and 4P).”
Quote in the paperSubstantial claim - Findingown data
In some rax1-3 rax2-1 individuals, axillary shoots terminated with leaf-like structures, indicating a very early loss of function of the respective axillary meristem.
“In other individuals, axillary shoots terminated with leaf-like structures (Figure 4L), indicating a very early loss of function of the respective axillary meristem.”
Quote in the paperNot a substantial claim - Findingown data
Removal of the primary bolt did not stimulate outgrowth of any axillary shoots from the bare leaf axils of rax1-3 as it did in wild-type plants.
“In addition, removal of the primary bolt did not stimulate the outgrowth of any axillary shoots from these bare leaf axils as it did in wild-type plants.”
Quote in the paperSubstantial claim - Findingown data
rax1-3 plants grown to maturity under short-day conditions show a reduction in the number of axillary buds originating from the axils of rosette leaves.
“Different from the wild type, rax1-3 plants showed a reduction in the number of axillary buds originating from the axils of rosette leaves (Figure 4).”
Quote in the paperSubstantial claim - Findingown data
RAX3 mRNA was detected in the axils of vegetative leaf primordia from P2 to P10.
“RAX3 mRNA was detected in the axils of vegetative leaf primordia from P2 to P10.”
Quote in the paperNot a substantial claim - Findingown data
The primary bolts of rax1-3 mutants grew significantly taller than those of wild-type plants (rax1-3: 34.9 cm ± 1.53, n = 15; Col: 22.0 cm ± 1.03, n = 18).
“The primary bolts of rax1-3 mutants grew significantly taller than those of wild-type plants (rax1-3: 34.9 cm 6 1.53, n ¼ 15; Col: 22.0 cm 6 1.03, n ¼ 18; errors are standard errors of the mean).”
Quote in the paperNot a substantial claim - Findingown data
The phenotypic alterations of rax1-3 were strongly diminished or not found when plants were grown in long photoperiods.
“The described phenotypic alterations were strongly diminished or not found when rax1-3 plants were grown in long photoperiods.”
Quote in the paperNot a substantial claim - Findingown data
In the axils of older leaf primordia of the wild type, STM expression was focused to a group of small, densely cytoplasmic cells localized next to the adaxial center of the primordium border.
“In the axils of older leaf primordia of the wild type, STM expression was focused to a group of small, densely cytoplasmic cells localized next to the adaxial center of the primordium border (Figures 6A and 6C).”
Quote in the paperSubstantial claim - Findingown data
In contrast with las-4 mutants, in which between one and five of the uppermost rosette leaves support axillary bud formation, las-4 rax1-3 plants did not produce any axillary buds from vegetative nodes.
“In contrast with las-4 mutants, in which between one and five of the uppermost rosette leaves support axillary bud formation (Figure 8A), las-4 rax1-3 plants did not produce any axillary buds from vegetative nodes (Figure 8B).”
Quote in the paperSubstantial claim - Findingown data
rax1-3 rax3-1 double mutants displayed an enhancement of the rax1-3 branching defect during vegetative development.
“Comparable to rax1-3 rax2-1, rax1-3 rax3-1 double mutants also displayed an enhancement of the rax1-3 branching defect during vegetative development (Figure 4J).”
Quote in the paperSubstantial claim - Findingown data
Transverse sections revealed that RAX1 mRNA accumulates in a ball-shaped domain at the adaxial center of leaf primordia, extending approximately three to five cell layers in the adaxial-abaxial and the tangential dimensions.
“Transverse sections revealed that RAX1 mRNA accumulates in a ball-shaped domain at the adaxial center of leaf primordia, extending approximately three to five cell layers in the adaxial-abaxial and the tangential dimensions (Figures 7E to 7H).”
Quote in the paperNot a substantial claim - Findingown data
Transcripts of MYB37, MYB38, MYB84, and MYB87 are detected in different plant tissues, including the shoot tip.
“Transcripts of the genes MYB37, MYB38, MYB84, and MYB87 could be detected in different plant tissues, including the shoot tip (Figure 2).”
Quote in the paperSubstantial claim - Findingown data
In 35S:RAX2 transgenic plants, the amount of RAX2 transcript correlates well with the severity of the mutant phenotype.
“Semiquantitative RT-PCR analysis revealed that in comparison with the Col wild type, these transgenic plants showed an increase in RAX2 transcript level, and the amount of RAX2 transcript was found to correlate well with the severity of the mutant phenotype (see Supplemental Figure 6 online).”
Quote in the paperSubstantial claim - Findingown data
RAX3 transcripts were detected at the adaxial base of leaf primordia in longitudinal sections through 28-d-old vegetative shoot apices.
“Longitudinal sections through 28-d-old vegetative shoot apices showed RAX3 transcripts at the adaxial base of leaf primordia (Figure 6G).”
Quote in the paperNot a substantial claim - Findingown data
Focused STM expression domains were not observed in the rax1-3 rax2-1 rax3-1 triple mutant.
“The focused STM expression domains were not observed in the triple mutant (Figures 6B and 6D), suggesting that axillary meristems were not initiated in barren leaf axils of the rax1-3 rax2-1 rax3-1 mutant and that the RAX genes are involved in an early step of axillary bud formation.”
Quote in the paperSubstantial claim - Findingown data
The reduction in axillary bud formation observed in rax1-3 rax2-1 double mutants was much stronger than the inhibition seen in segregating wild-type plants.
“The reduction in axillary bud formation observed in rax1-3 rax2-1 double mutants was however much stronger than the inhibition seen in segregating wild-type plants.”
Quote in the paperSubstantial claim - Findingown data
RAX1 expression was found to be unaffected in las-4 mutant plants.
“On the other hand, RAX1 expression was found to be unaffected in las-4 mutant plants (see Supplemental Figure 7 online).”
Quote in the paperSubstantial claim - Findingown data
MYB36 and MYB68 mRNA is almost exclusively found in the root.
“By contrast, MYB36 and MYB68 mRNA was almost exclusively found in the root.”
Quote in the paperSubstantial claim - Findingown data
The rax1-3 rax2-1 double mutants did not produce axillary buds in most of their rosette leaf axils.
“These double mutants did not produce axillary buds in most of their rosette leaf axils (Figures 4F, 4G, and 4I).”
Quote in the paperSubstantial claim - Findingown data
During the reproductive phase, the formation of side shoots from the axils of cauline leaves in rax1-3 did not deviate from the wild type.
“During the reproductive phase, the formation of side shoots from the axils of cauline leaves did not deviate from the wild type.”
Quote in the paperSubstantial claim - Findingown data
rax2-1 and rax3-1 mutants grown either in short or long photoperiods did not show alterations in the pattern of axillary bud formation or any other obvious phenotypic alteration.
“In comparison with the corresponding wild types, rax2-1 and rax3-1 mutants grown either in short or long photoperiods did not show alterations in the pattern of axillary bud formation or any other obvious phenotypic alteration (see Supplemental Figure 5 online).”
Quote in the paperSubstantial claim - Findingown data
Closer inspection of empty leaf axils of rax1-3 with a stereomicroscope and scanning electron microscopy did not uncover any morphological structures within the empty leaf axils.
“Closer inspection of empty leaf axils with a stereomicroscope and by scanning electron microscopy did not uncover any morphological structures within the empty leaf axils (Figure 4B; see Supplemental Figure 3 online).”
Quote in the paperSubstantial claim - Findingown data
In rax1-3, rax2-1, and rax3-1 insertion alleles, no functional transcript can be detected.
“These findings demonstrated that in all three cases no functional transcript can be detected.”
Quote in the paperSubstantial claim - Findingown data
Combination of the rax1-3 and rax2-1 alleles resulted in a strong enhancement of the branching defect observed in rax1-3 plants.
“Combination of the rax1-3 and rax2-1 alleles resulted in a strong enhancement of the branching defect observed in rax1-3 plants.”
Quote in the paperSubstantial claim - Findingown data
Examination of LAS transcript accumulation in the rax1-3 rax2-1 rax3-1 triple mutant by RNA in situ hybridization revealed an expression pattern indistinguishable from the Col wild type.
“Examination of LAS transcript accumulation in the rax1-3 rax2-1 rax3-1 triple mutant by RNA in situ hybridization revealed an expression pattern that is indistinguishable from the Col wild type (Figure 8F).”
Quote in the paperSubstantial claim - Findingown data
The tomato Bl gene is most closely related to the Bl-like sequences Blind-like2 and Blind-like1 from tomato.
“Phylogenetic analysis revealed that the tomato Bl gene is most closely related to the Bl-like sequences Blind-like2 and Blind-like1 from tomato (Figure 1; see Supplemental Figure 1”
Quote in the paperNot a substantial claim - Findingown data
RAX1 transcripts were detected in the axils of leaf primordia from P0 to P10/11.
“In these plants, RAX1 transcripts were detected in the axils of leaf primordia from P0 to P10/11 (Figures 7A and 7E to 7H).”
Quote in the paperNot a substantial claim - Findingown data
In the axils of the youngest cauline leaves of the double mutant, lateral shoots were frequently replaced by flowers.
“In the axils of the youngest cauline leaves of the double mutant, lateral shoots were frequently replaced by flowers.”
Quote in the paperSubstantial claim - Findingown data
No obvious corresponding zonation was observed in the distribution of RAX transcripts along the shoot axis.
“However, we did not observe an obvious corresponding zonation in the distribution of RAX transcripts along the shoot axis.”
Quote in the paperSubstantial claim - Findingown data
RT-PCR analysis revealed that the genes MYB37 (RAX1), MYB38 (RAX2), MYB84 (RAX3), and MYB87 are expressed in the shoot tip.
“RT-PCR analysis revealed that the genes MYB37 (RAX1), MYB38 (RAX2), MYB84 (RAX3), and MYB87 are expressed in the shoot tip where a functional Bl homolog is expected to exert its function.”
Quote in the paperSubstantial claim - Findingown data
rax1-3 las-4 double mutants showed a strong reduction in the number of early cauline leaves supporting the formation of a lateral shoot.
“and showed a strong reduction in the number of early cauline leaves supporting the formation of a lateral shoot.”
Quote in the paperSubstantial claim - Findingown data
Axillary shoots that originated from young cauline leaf axils of the las-4 rax1-3 double mutant frequently terminated after formation of one or two leaves.
“those axillary shoots that originated from young cauline leaf axils of the las-4 rax1-3 double mutant frequently terminated after formation of one or two leaves”
Quote in the paperSubstantial claim - Findingown data
Characterization of knockout mutants revealed that different R2R3 Myb genes control the formation of axillary meristems at different developmental times.
“Characterization of knockout mutants revealed that different R2R3 Myb genes control the formation of axillary meristems at different developmental times.”
Quote in the paperSubstantial claim - Findingown data
Secondary branching was strongly inhibited in the las-4 rax1-3 double mutant.
“and secondary branching was strongly inhibited.”
Quote in the paperSubstantial claim - Findingown data
In rax2-1 rax3-1 double mutants, approximately half of the leaves in the middle and at the top of the rosette did not support the formation of axillary buds.
“However, in rax2-1 rax3-1 double mutants, approximately half of the leaves in the middle and at the top of the rosette did not support the formation of axillary buds (Figure 9).”
Quote in the paperSubstantial claim - Findingnone given
las-4 mutants are impaired in the formation of axillary meristems during the vegetative phase.
“las-4 mutants are impaired in the formation of axillary meristems during the vegetative phase.”
Quote in the paperSubstantial claim - Findingown data
rax1-3 las-4 double mutants did not develop any axillary shoots during the vegetative phase of development.
“rax1-3 las-4 double mutants did not develop any axillary shoots during the vegetative phase of development”
Quote in the paperSubstantial claim - Findingown data
Phenotypic analysis has demonstrated that homozygous rax1-3 plants grown in short days do not develop axillary buds from rosette leaf axils formed early in the vegetative phase.
“Phenotypic analysis has demonstrated that homozygous rax1-3 plants grown in short days do not develop axillary buds from rosette leaf axils formed early in the vegetative phase.”
Quote in the paperSubstantial claim - Findingreasoning
Primary branching of the flowering stem is not affected by the las-4 mutation.
“Primary branching of the flowering stem is not affected by the las-4 mutation”
Quote in the paperSubstantial claim - Findingown data
Plants homozygous for either the rax2-1 or the rax3-1 loss-of-function alleles did not exhibit a defect in axillary bud formation.
“Plants homozygous for either the rax2-1 or the rax3-1 loss-offunction alleles did not exhibit a defect in axillary bud formation.”
Quote in the paperSubstantial claim - Findingown data
In rax1-3 plants, axillary shoots always developed from the cauline leaf axils.
“In addition, axillary shoots always developed from the cauline leaf axils of rax1-3 plants.”
Quote in the paperSubstantial claim - Findingown data
Axillary shoot formation is strongly dependent on RAX1 function in the early phase of vegetative development followed by a decreasing dependence toward maturation.
“Characterization of the rax1-3 mutant has demonstrated that axillary shoot formation is also strongly dependent on RAX1 function in the early phase of vegetative development followed by a decreasing dependence toward maturation.”
Quote in the paperSubstantial claim - Findingcitation
In the inflorescence meristem, RAX1 expression was only detected in the axils of stage 0 and stage 1 flower primordia.
“In the inflorescence meristem, RAX1 expression was only detected in the axils of stage 0 and stage 1 flower primordia(Smyth et al., 1990).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Smyth et al., 1990 source
- Findingown data
In the rax1-3 rax2-1 rax3-1 triple mutant, lateral shoot formation during the vegetative phase is almost completely inhibited.
“In the rax1-3 rax2-1 rax3-1 triple mutant, lateral shoot formation during the vegetative phase is almost completely inhibited.”
Quote in the paperSubstantial claim - Findingown data
A focused STM expression domain was detected next to the adaxial center of older leaf primordia in the wild type but not in the triple mutant.
“In addition, a focused STM expression domain was detected next to the adaxial center of older leaf primordia in the wild type ([A] and [C], arrowheads) but not in the triple mutant ([B] and [D], arrowheads).”
Quote in the paperSubstantial claim - Findingown data
After floral transition, RAX1 transcripts were found at the adaxial side of young primordia initiated on the elongating stem.
“After floral transition, RAX1 transcripts were found at the adaxial side of young primordia initiated on the elongating stem.”
Quote in the paperSubstantial claim - Findingown data
In comparison with las-4 plants, las-4 rax1-3 mutants showed a further reduction in the formation of lateral shoots during the vegetative and reproductive phases of development.
“In comparison with las-4 plants (A), las-4 rax1-3 mutants showed a further reduction in the formation of lateral shoots during the vegetative (B) and reproductive phases ([C], arrows) of development.”
Quote in the paperSubstantial claim - Findingown data
When rax1-3, rax2-1, and rax3-1, as well as the double and triple mutants, were cultivated under long-day conditions, the described defects in shoot branching were greatly diminished or no longer detectable.
“When rax1-3, rax2-1, and rax3-1, as well as the double and triple mutants, were cultivated under long-day conditions, the described defects in shoot branching were greatly diminished or no longer detectable.”
Quote in the paperSubstantial claim - Findingown data
During vegetative development, RAX1 transcripts were detected from P0 to P10/11 in a spherical domain at the adaxial center of leaf primordia.
“During vegetative development, RAX1 transcripts were detected from P0 to P10/11 in a spherical domain at the adaxial center of leaf primordia.”
Quote in the paperSubstantial claim - Findingown data
In contrast with LAS, the RAX1 expression domain does not extend along the whole adaxial boundary of a leaf primordium but is focused to the center of the leaf axil where the new meristem will be initiated.
“In contrast with LAS, the RAX1 expression domain does not extend along the whole adaxial boundary of a leaf primordium but is focused to the center of the leaf axil where the new meristem will be initiated.”
Quote in the paperSubstantial claim - Findingown data
The rax1-3 mutant analyzed in this study did not show an alteration in root morphology.
“The rax1-3 mutant analyzed in this study did not show an alteration in root morphology.”
Quote in the paperNot a substantial claim - Findingown data
The RAX1 gene is expressed in the axils of leaf and flower primordia.
“The RAX1 gene is expressed in the axils of leaf and flower primordia.”
Quote in the paperSubstantial claim - Findingown data
In situ hybridization experiments revealed no regulatory interdependence of LAS and RAX1.
“However, in situ hybridization experiments revealed no regulatory interdependence of these two genes.”
Quote in the paperSubstantial claim - Findingown data
rax1-3 plants flower earlier than Col wild-type plants.
“(A) rax1-3 plants (right) flower earlier than Col wild-type plants (left).”
Quote in the paperNot a substantial claim - Interpretationown data
LAS and RAX1 redundantly influence initiation, maintenance, and identity of axillary meristems.
“From these experiments, we conclude that LAS and RAX1 redundantly influence initiation, maintenance, and identity of axillary meristems.”
Quote in the paperSubstantial claim - Interpretationown data
RAX1, RAX2, and RAX3 encode proteins with partially redundant functions regulating the formation of axillary meristems during the vegetative phase and at the beginning of reproductive development.
“The above phenotypic analyses suggest that RAX1, RAX2, and RAX3 encode proteins with partially redundant functions regulating the formation of axillary meristems during the vegetative phase and at the beginning of reproductive development.”
Quote in the paperSubstantial claim - Interpretationown data
RAX1 and RAX2 have a greater impact on axillary meristem formation than RAX3.
“These observations indicate that RAX1 and RAX2 have a greater impact on axillary meristem formation than RAX3.”
Quote in the paperSubstantial claim - Interpretationown data
RAX2 is uniformly expressed in all cells.
“This result suggests a uniform expression of RAX2 in all cells, which is corroborated by the strong bands observed in RT-PCR experiments with RNA from different tissues (Figure 2).”
Quote in the paperNot a substantial claim - Interpretationown data
The gradient in axillary bud formation observed in rax1-3 may be the result of redundant gene activities that replace the missing RAX1 function at later stages of vegetative and in reproductive development.
“The gradient in axillary bud formation observed in rax1-3 may be the result of redundant gene activities that replace the missing RAX1 function at later stages of vegetative and in reproductive development.”
Quote in the paperSubstantial claim - Premisecitation
Lateral shoots are preferentially formed between the second and the fifth node of the primary shoot and at the two nodes below the inflorescence in tomato bl.
“Lateral shoots are preferentially formed between the second and the fifth node of the primary shoot and at the two nodes below the inflorescence.”
Quote in the paperNot a substantial claim - Interpretationown data
At least two pathways control the initiation of axillary meristems in Arabidopsis.
“Double mutant combinations of lateral suppressor and rax1-3 as well as expression studies suggest that at least two pathways control the initiation of axillary meristems in Arabidopsis.”
Quote in the paperSubstantial claim - Interpretationreasoning
The complete lack of side shoots in rosette leaf axils and the failure to initiate axillary shoots in the early cauline leaf axils is more than the sum of the defects observed in both single gene mutants.
“The complete lack of side shoots in rosette leaf axils and the failure to initiate axillary shoots in the early cauline leaf axils is more than the sum of the defects observed in both single gene mutants.”
Quote in the paperSubstantial claim - Interpretationreasoning
The three RAX genes analyzed show overlapping patterns of activity at different stages of shoot development.
“In Arabidopsis, the deviations in phenotypes between plants harboring different mutant genes suggest that the three genes analyzed show overlapping patterns of activity at different stages of shoot development.”
Quote in the paperSubstantial claim - Interpretationown data
The RAX genes control a very early step of axillary meristem initiation.
“As revealed by monitoring of SHOOT MERISTEMLESS transcript accumulation, the RAX genes control a very early step of axillary meristem initiation.”
Quote in the paperSubstantial claim - Interpretationown data
Different members of the Bl-related subgroup of R2R3 Myb genes act in a partially redundant fashion to regulate axillary meristem formation.
“Double mutant analysis demonstrates that different members of the Bl-related subgroup of R2R3 Myb genes act in a partially redundant fashion to regulate axillary meristem formation.”
Quote in the paperSubstantial claim - Interpretationown data
The hypothesis of two independent regulatory pathways is consistent with the expression patterns of LAS and RAX1 in wildtype and mutant backgrounds.
“The hypothesis of two independent regulatory pathways is consistent with the expression patterns of LAS and RAX1 in wildtype and mutant backgrounds.”
Quote in the paperSubstantial claim - Premisenone given
In the tomato blind (bl) mutant, axillary meristem formation is strongly suppressed during shoot and inflorescence development, leading to a severe reduction in the number of lateral axes.
“In the tomato blind (bl) mutant, axillary meristem formation is strongly suppressed during shoot and inflorescence development, leading to a severe reduction in the number of lateral axes.”
Quote in the paperSubstantial claim - Interpretationown data
LAS and the Bl homologous genes act in independent control pathways.
“Furthermore, double mutant combinations, including las and one of the myb loss-offunction alleles, suggest that LAS and the Bl homologous genes act in independent control pathways.”
Quote in the paperSubstantial claim - Premisecitation
In Arabidopsis, loss of LAS function leads to a suppression of axillary meristem formation during vegetative development.
“In Arabidopsis, loss of LAS function leads to a suppression of axillary meristem formation during vegetative development.”
Quote in the paperSubstantial claim - Interpretationreasoning
LAS and RAX1 are elements of two independent control pathways of axillary meristem formation.
“support the idea that the genes are elements of two independent control pathways of axillary meristem formation.”
Quote in the paperSubstantial claim - Interpretationown data
LAS and RAX1 are not related to each other in a hierarchical order.
“These results demonstrate that LAS and RAX1 are not related to each other in a hierarchical order”
Quote in the paperSubstantial claim - Interpretationown data
An influence of the environment on the proposed control mechanism is indicated by the fact that the defects observed under short-day conditions were strongly diminished or vanished in long days.
“An influence of the environment on the proposed control mechanism is indicated by the fact that the defects observed under short-day conditions were strongly diminished or vanished in long days.”
Quote in the paperNot a substantial claim - Interpretationown data
The formation of axillary meristems along the shoot axis is not uniformly controlled.
“Taken together, the above observations suggest that the formation of axillary meristems along the shoot axis is not uniformly controlled.”
Quote in the paperSubstantial claim - Interpretationreasoning
LAS and RAX1 play a role in axillary meristem formation along the whole axis of an Arabidopsis plant.
“These data suggest that LAS and RAX1 play a role in axillary meristem formation along the whole axis of an Arabidopsis plant.”
Quote in the paperSubstantial claim - Interpretationown data
RAX2 and RAX3 functions are more important in the middle and late phases of vegetative development.
“From these data, we conclude that the RAX2 and RAX3 functions are more important in the middle and late phases of vegetative development.”
Quote in the paperSubstantial claim - Interpretationreasoning
LAS function is only required for the initiation of axillary meristems during vegetative development.
“suggesting that LAS function is only required for the initiation of axillary meristems during vegetative development.”
Quote in the paperSubstantial claim - Interpretationown data
RAX3 contributes to the regulation of axillary meristem identity/determinacy.
“However, also in these plants we found that shoots in the axils of cauline leaves were frequently replaced by flowers, indicating a contribution of RAX3 to the regulation of axillary meristem identity/determinacy.”
Quote in the paperSubstantial claim - Interpretationreasoning
The RAX1 expression pattern contains positional information that may be crucial to determine the specific position of a lateral meristem.
“Therefore, the RAX1 expression pattern contains positional information that may be crucial to determine the specific position of a lateral meristem.”
Quote in the paperSubstantial claim - Interpretationown data
The phenotypic defects seen in rax1-3 rax2-1 and rax2-1 rax3-1 plants suggest a specific role of RAX2 during the late period of vegetative development.
“However, the phenotypic defects seen in rax1-3 rax2-1 and rax2-1 rax3-1 plants suggest a specific role of RAX2 during the late period of vegetative development.”
Quote in the paperSubstantial claim
- May combine two claims. 33
- Classified as probably not a substantial claim. 18
May combine two claims.
InterpretationcitationAxillary meristems are formed from cells that are directly derived from the primary shoot apical meristem and retain their meristematic potential.
“These results are in favor of the idea that axillary meristems are formed from cells that are directly derived from the primary SAM and retain their meristematic potential.”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites Greb et al., 2003 source
Classified as probably not a substantial claim.
PremisecitationThe tomato Bl gene encodes an R2R3 Myb transcription factor that plays a central role in the regulation of axillary meristem initiation during vegetative and reproductive development.
“The tomato Bl gene encodes an R2R3 Myb transcription factor that plays a central role in the regulation of axillary meristem initiation during vegetative and reproductive development (Schmitz et al., 2002).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Schmitz et al., 2002 source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationDuring prolonged vegetative development, axillary meristems are initiated in an acropetal sequence at a distance from the shoot apical meristem.
“During prolonged vegetative development, axillary meristems are initiated in an acropetal sequence at a distance from the shoot apical meristem (SAM) (Hempel and Feldman, 1994;Stirnberg et al., 1999Stirnberg et al., , 2002;;Grbic and Bleecker, 2000).”
Quote in the paperNot a substantial claim2 of 3 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationThe mutant phenotypes result either from a defect in axillary meristem formation or from a decrease in the outgrowth potential of axillary buds.
“The mutant phenotypes result either from a defect in axillary meristem formation (e.g., in Arabidopsis, las [Greb et al., 2003], revoluta [Talbert et al., 1995], and pinhead [McConnell and Barton, 1995]; in tomato, ls [Schumacher et al., 1999] and blind [Schmitz et al., 2002]; in maize, barren stalk1 [Gallavotti et al., 2004]; in rice, monoculm1 [Li et al., 2003] and lax panicle [Komatsu et al., 2”
Quote in the paperNot a substantial claim2 of 3 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationThe tomato bl mutant is impaired in axillary meristem formation in specific zones along the shoot axis.
“Interestingly, the tomato bl mutant is impaired in axillary meristem formation in specific zones along the shoot axis (Schmitz et al., 2002).”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites Schmitz et al., 2002 source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationAnalyses of the expression patterns of SHOOT MERISTEMLESS (STM) and LATERAL SUPPRESSOR (LAS) revealed that both genes are coexpressed in the axils of young leaf primordia from the P1 primordium until the formation of the axillary meristem.
“Analyses of the expression patterns of the shoot meristem marker gene SHOOT MERISTEMLESS (STM) and the axil identity gene LATERAL SUPPRESSOR (LAS) revealed that both genes are coexpressed in the axils of young leaf primordia from the P1 primordium until the formation of the axillary meristem (Greb et al., 2003).”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites Greb et al., 2003 source
The discussion of LAS function reports LAS and STM coexpression in leaf axils from P1 to P15. It says this coexpression lasts until STM becomes focused at P16, whereas the results say axillary meristems are first morphologically recognizable at P21. Thus, the source supports coexpression in young primordia but not its continuation until meristem formation. (LLM, conf=0.89)
Experimental — accuracy not yet measured
May combine two claims.
Findingown dataIn las-4 rax1-3 plants, the oldest cauline leaves very often did not support the development of axillary shoots, resulting in an enhancement of the las-4 branching defect.
“Also, the oldest cauline leaves very often did not support the development of axillary shoots (Figure 8C), resulting in an enhancement of the las-4 branching defect.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataThe patterns of RAX3 and RAX1 transcript accumulation were similar, but the RAX3 signal intensity was lower.
“Whereas the patterns of RAX3 and RAX1 transcript accumulation were similar, the RAX3 signal intensity was found to be lower.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataIn rax2-1 rax3-1 mutants, many axillary buds developed from the basal nodes of the rosette, but lateral bud formation was reduced in the middle and at the top of the rosette.
“In rax2-1 rax3-1 mutants, many axillary buds developed from the basal nodes of the rosette, but lateral bud formation was reduced in the middle and at the top of the rosette (Figures 4M and 4N).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataIn rax1-3, toward the top of the rosette, the number of axillary buds increases, and a very high proportion of late rosette leaves produce axillary buds, resulting in an acropetal gradient of axillary bud formation.
“Toward the top of the rosette, the number of axillary buds increased, and a very high proportion of the late rosette leaves produced axillary buds resulting in an acropetal gradient of axillary bud formation.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataWhereas only a single axillary shoot was found in nearly all cauline leaf axils of control plants, 35S:RAX2 lines developed accessory paraclades in almost all leaf axils of the flowering stem.
“Whereas only a single axillary shoot was found in nearly all cauline leaf axils of control plants, 35S:RAX2 lines developed accessory paraclades in almost all leaf axils of the flowering stem (Figure 5B).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataThe T-DNA insertions in RAX1 and RAX2 are positioned in the third exon and the second intron, respectively, and the En-1 insertion in RAX3 is localized in the first exon.
“The T-DNA insertions in RAX1 and RAX2 are positioned in the third exon and the second intron, respectively, whereas the En-1 insertion in RAX3 is localized in the first exon (Figure 3).”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataThe patterns of transcript accumulation of LAS in rax1-3 rax2-1 rax3-1 and of RAX1 in las-4 plants did not show any deviations from the corresponding wild-type controls.
“The patterns of transcript accumulation of LAS in rax1-3 rax2-1 rax3-1 and of RAX1 in las-4 plants did not show any deviations from the corresponding wild-type controls.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataIn rax1-3, toward the middle of the rosette, the number of axillary buds increased, and almost all leaves formed late in the vegetative phase initiated lateral buds, resulting in an acropetal gradient of axillary bud formation.
“Toward the middle of the rosette, the number of axillary buds increased, and almost all leaves formed late in the vegetative phase initiated lateral buds, resulting in an acropetal gradient of axillary bud formation (Figure 9).”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataDifferences between the mutants and the corresponding wild-type plants are significant at the 0.05 > P > 0.01 level (*) or the P < 0.01 level (**).
“Differences between the mutants and the corresponding wildtype plants are significant at the 0.05 > P > 0.01 level (*) or the P < 0.01 level (**).”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataIn the shoot tip, RAX3 transcripts accumulate in a pattern that is similar to the RAX1 pattern, but the hybridization signals were weaker.
“In the shoot tip, RAX3 transcripts accumulate in a pattern that is similar to the RAX1 pattern, but the hybridization signals were weaker.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataIn contrast with RAX1 and RAX3, the RAX2 gene is not expressed in a specific pattern in the shoot tip but was found to be transcribed in all cells of the tissues analyzed.
“In contrast with RAX1 and RAX3, the RAX2 gene is not expressed in a specific pattern in the shoot tip but was found to be transcribed in all cells of the tissues analyzed.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataIn young Col wild-type plants grown for 14 d in short photoperiods, the RAX1 antisense probe did not reveal a signal, whereas this probe detected the RAX1 transcript in the same experiment in apices of 28-d-old plants.
“In young Col wild-type plants grown for 14 d in short photoperiods, the RAX1 antisense probe did not reveal a signal, whereas this probe detected the RAX1 transcript in the same experiment in apices of 28-d-old plants.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataThe cellular dimensions of these expression domains and the developmental timing of expression were comparable to the vegetative phase.
“The cellular dimensions of these expression domains and the developmental timing of expression were comparable to the vegetative phase.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataThese expression domains had a diameter of approximately three to five cells always including the L3 layer and very often the L1 and L2 layers of the meristem.
“These expression domains had a diameter of approximately three to five cells always including the L3 layer and very often the L1 and L2 layers of the meristem.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataRT-PCR analysis demonstrated that all three genes analyzed show the highest levels of transcript accumulation in the root.
“RT-PCR analysis demonstrated that all three genes analyzed show the highest levels of transcript accumulation in the root.”
Quote in the paperNot a substantial claimMay combine two claims.
Interpretationown dataAxillary meristems were not initiated in barren leaf axils of the rax1-3 rax2-1 rax3-1 mutant, and the RAX genes are involved in an early step of axillary bud formation.
“The focused STM expression domains were not observed in the triple mutant (Figures 6B and 6D), suggesting that axillary meristems were not initiated in barren leaf axils of the rax1-3 rax2-1 rax3-1 mutant and that the RAX genes are involved in an early step of axillary bud formation.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataThe barren leaf axils of rax1-3 plants are due to a defect in axillary meristem formation rather than a defect in axillary bud outgrowth.
“From these experiments, we concluded that the barren leaf axils of rax1-3 plants were due to a defect in axillary meristem formation rather than a defect in axillary bud outgrowth.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataThe strong branching defects observed in the rax1-3 rax2-1 double mutant indicate that RAX1 and RAX2 are the key regulators, and RAX3 seems to have only a minor influence.
“The strong branching defects observed in the rax1-3 rax2-1 double mutant indicate that the corresponding genes are the key regulators, and RAX3 seems to have only a minor influence.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown datarax2-1 and rax3-1 are very likely null alleles, whereas the rax1-3 allele may have residual activity.
“rax2-1 and rax3-1 are very likely null alleles, whereas we cannot exclude that the protein encoded by the rax1-3 allele, which does not contain the last 43 amino acids of RAX1, has a residual activity.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataRAX2 and RAX3 act redundantly, controlling the formation of axillary meristems predominantly at late stages of vegetative development.
“These findings suggest that RAX2 and RAX3 act redundantly, controlling the formation of axillary meristems predominantly at late stages of vegetative development.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataThe RAX1-RAX3 genes and LAS are not related to each other in a hierarchical order but are components of independent control mechanisms of axillary meristem formation.
“These experiments suggested that the RAX1-RAX3 genes and LAS are not related to each other in a hierarchical order but are components of independent control mechanisms of axillary meristem formation.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataRAX genes are partially redundant in function and allow a fine-tuning of secondary axis formation.
“RAX genes are partially redundant in function and allow a fine-tuning of secondary axis formation.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S2 (checkable), S3 (load-bearing).
InterpretationreasoningThe uncovered fine-tuning of shoot branching may enable a plant to react very specifically to changes in environmental conditions.
“The uncovered fine-tuning of shoot branching may enable a plant to react very specifically to changes in environmental conditions.”
Quote in the paperNot a substantial claimMay combine two claims.
Interpretationown dataThe triple mutant rax1-3 rax2-1 rax3-1 displayed the most extreme defect in axillary shoot formation, which supports the hypothesis of a redundant control of axillary meristem formation by these three MYB genes.
“The triple mutant rax1-3 rax2-1 rax3-1 displayed the most extreme defect in axillary shoot formation (Figure 9), which supports the hypothesis of a redundant control of axillary meristem formation by these three MYB genes.”
Quote in the paperSubstantial claimMay combine two claims.
Premisenone givenLAS is expressed in a band-shaped domain at the adaxial boundaries of leaf primordia and encodes a putative transcription factor belonging to the GRAS family of regulatory proteins.
“LAS is expressed in a band-shaped domain at the adaxial boundaries of leaf primordia and encodes a putative transcription factor belonging to the GRAS family of regulatory proteins.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationIn several plant species, including tomato, Arabidopsis, rice, and maize, mutants have been described that are characterized by a reduction in the number of axillary shoots.
“In several plant species, including tomato (Solanum lycopersicum), Arabidopsis, rice (Oryza sativa), and maize (Zea mays), mutants have been described that are characterized by a reduction in the number of axillary shoots.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S4 (based).
Premisenone givenIn tomato, a Myb transcription factor encoded by the Bl gene controls the initiation of axillary meristems during vegetative and inflorescence development.
“In tomato, a Myb transcription factor encoded by the Bl gene controls the initiation of axillary meristems during vegetative and inflorescence development.”
Quote in the paperNot a substantial claimMay combine two claims.
Interpretationown dataFormation of axillary meristems is highly dependent on RAX1 function during the early phase of vegetative development and becomes less dependent on it as the plant matures.
“This phenotype suggests that formation of axillary meristems is highly dependent on RAX1 function during the early phase of vegetative development and becomes less dependent on it as the plant matures.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductnone givenValues are means ± SE, and errors are standard error of the mean (n = 20 to 33).
“Values are means 6 SE, and errors are standard error of the mean (n ¼ 20 to 33).”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenAmplification of actin cDNA was performed as a control to ensure that equal amounts of cDNA were added to each PCR reaction.
“Amplification of actin cDNA using the primers ActinATfor (59-TGGTGTCATGGTTGGGATG-39) and ActinATrev (59-CACCACTGAG-CACAATGTTAC-39) was performed as a control to ensure that equal amounts of cDNA were added to each PCR reaction.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductown dataInsertions of the T-DNAs or the En-1 transposon were verified by DNA sequencing and DNA gel blot analysis, respectively.
“Insertions of the T-DNAs or the En-1 transposon were verified by DNA sequencing and DNA gel blot analysis, respectively.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenFor the double and triple mutants, a mixed Col-0 Ws background was used as a control.
“For the double and triple mutants, a mixed Col-0 Ws background was used as a control.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductnone givenFor each experiment, 20 plants were analyzed; each experiment was repeated at least once.
“For each experiment, 20 plants were analyzed; each experiment was repeated at least once.”
Quote in the paperNot a substantial claimMay combine two claims.
Interpretationown dataLAS and RAX1 not only affect initiation but also maintenance and identity of axillary meristems along the flowering stem.
“These observations demonstrate that LAS and RAX1 not only affect initiation but also maintenance and identity of axillary meristems along the flowering stem.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductnone givenSeeds were imbibed in water at 4°C for 4 d; only germinated seeds were transferred to soil to ensure an equal state of development.
“For determination of the flowering time, seeds were imbibed in water at 48C for 4 d.Subsequently, only germinated seeds were transferred to soil to ensure an equal state of development.”
Quote in the paperNot a substantial claimMay combine two claims.
Interpretationown dataIn long photoperiods, the activities of RAX1, RAX2, and RAX3 may be compensated by related Myb genes of the same subgroup or by yet another pathway.
“In long photoperiods, the activities of RAX1, RAX2, and RAX3 may be compensated by related Myb genes of the same subgroup or by yet another pathway.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductnone givenrax1-3 and rax3-1 are in the Col-0 background, whereas rax2-1 is in the Ws background.
“rax1-3 and rax3-1 are in the Col-0 background, whereas rax2-1 is in the Ws background.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationMYB68, another member of the same Myb gene subfamily, was recently shown to be strongly expressed in root pericycle cells and to regulate lignification.
“MYB68, another member of the same Myb gene subfamily, was recently shown to be strongly expressed in root pericycle cells and to regulate lignification (Feng et al., 2004).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Feng et al., 2004 source
The authors state this as an assumption.
A gene functionally related to Bl would be expressed in the shoot apex.
“Because of its influence on axillary meristem formation and inflorescence development, we expected a gene functionally related to Bl to be expressed in the shoot apex.”
The paper relies on this without support.
The cell groups with focused STM expression in the wild type develop into new meristems.
“These cell groups develop into new meristems.”
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
A small subgroup of MYB genes related to the tomato Blind gene modulate axillary meristem formation along the shoot axis in tomato and Arabidopsis.
“Furthermore, a small subgroup of MYB genes, related to the tomato Blind gene, were shown to modulate axillary meristem formation along the shoot axis in tomato (Schmitz et al., 2002) and Arabidopsis (Keller et al., 2006;M€ uller et al., 2006).”
From <i>Divide et impera</i>: boundaries shape the plant body and initiate new meristems (2016) · cites this paper as Müller et al., 2006
The Arabidopsis RAX1 gene encodes a MYB protein family protein.
“| RAX1 | Bl (tomato) | MYB | Reduced number of AMs | SAM and leaf primordia | Keller et al. (2006); M€ uller et al. |”
From <i>Divide et impera</i>: boundaries shape the plant body and initiate new meristems (2016) · cites this paper as Müller et al. (2006)
Loss-of-function mutants of RAX1 have a reduced number of axillary meristems.
“| RAX1 | Bl (tomato) | MYB | Reduced number of AMs | SAM and leaf primordia | Keller et al. (2006); M€ uller et al. |”
From <i>Divide et impera</i>: boundaries shape the plant body and initiate new meristems (2016) · cites this paper as Müller et al. (2006)
Bl in tomato is homologous to Arabidopsis RAX1.
“| RAX1 | Bl (tomato) | MYB | Reduced number of AMs | SAM and leaf primordia | Keller et al. (2006); M€ uller et al. |”
From <i>Divide et impera</i>: boundaries shape the plant body and initiate new meristems (2016) · cites this paper as Müller et al. (2006)
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“Another recently published example for redundant R2R3-MYB function is the subgroup 14 (SG14), covering the REGULATORS OF AXILLARY MERISTEMS proteins RAX1/MYB37, RAX2/MYB38 and RAX3/MYB84 (Muller et al., 2006), homologous to the tomato (Solanum lycopersicum) BLIND gene (Schmitz et al.”
BackgroundInfluential<i>Arabidopsis BRANCHED1</i> Acts as an Integrator of Branching Signals within Axillary Buds
Aguilar-Martínez, J. A., Poza-Carrión, C., & Cubas, P. (2007) · The Plant Cell · doi:10.1105/tpc.106.048934 · Cited by 883 · see citing works
“, 2003) and Blind/RAX1 (Schmitz et al., 2002; Keller et al., 2006; Muller et al., 2006) in tomato (Solanum lycopersicum), Arabidopsis, and rice.”
BackgroundInfluentialGenetic Regulation of Shoot Architecture
Wang, B., Smith, S. M., & Li, J. (2018) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-042817-040422 · Cited by 771 · see citing works
“In dicot plants, a MYB transcription factor gene known as BLIND in tomato (146) and its ortholog REGULATORS OF AXILLARY MERISTEMS in Arabidopsis (113) also regulate AM initiation.”
BackgroundMolecular Basis of Plant Architecture
Wang, Y., & Li, J. (2008) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.59.032607.092902 · Cited by 643 · see citing works
Expansion and Diversification of thePopulusR2R3-MYB Family of Transcription Factors
Wilkins, O., Nahal-Bose, H. K., Foong, J., Provart, N. J., & Campbell, M. M. (2008) · PLANT PHYSIOLOGY · doi:10.1104/pp.108.132795 · Cited by 551 · see citing works
“Blind-related proteins in Arabidopsis have demonstrated roles in the regulation of axillary meristems (AtMYB37, AtMYB38, and AtMYB84; Keller et al., 2006; Muller et al., 2006) and in root development (AtMYB68; Feng et al., 2004).”
BackgroundHibara, K.-I., Karim, M. R., Takada, S., Taoka, K.-I., Furutani, M., Aida, M., & Tasaka, M. (2006) · The Plant Cell · doi:10.1105/tpc.106.045716 · Cited by 387 · see citing works
“The MYB encoding gene REGULATOR OF AXILLARY MERISTEMS1 (RAX1) of Arabidopsis promotes axillary meristem initiation together with its redundant homologs RAX2 and RAX3 (Keller et al., 2006; Müller et al., 2006).”
BackgroundTwenty years on: The inner workings of the shoot apical meristem, a developmental dynamo
Barton, M. K. (2010) · Developmental Biology · doi:10.1016/j.ydbio.2009.11.029 · Cited by 372 · see citing works
“However, an increase in CLAVATA3 expression results in a decrease in the number of WUSCHELexpressing cells within 3 h (Müller et al., 2006).”
BackgroundStem-cell niches: nursery rhymes across kingdoms
Scheres, B. (2007) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2164 · Cited by 355 · see citing works
“In the incipient niche, the specification of new stem-cell areas and the re-initiation of WUS - and STM -expression domains involves GRAS and Myb transcription factors with highly specific expression domain”
The R2R3-MYB Transcription Factor Gene Family in Maize
Du, H., Feng, B.-R., Yang, S., Huang, Y., & Tang, Y. (2012) · PLoS ONE · doi:10.1371/journal.pone.0037463 · Cited by 355 · see citing works
Raman, S., Greb, T., Peaucelle, A., Blein, T., Laufs, P., & Theres, K. (2008) · The Plant Journal · doi:10.1111/j.1365-313x.2008.03483.x · Cited by 299 · see citing works
“Transcripts of the CUC1, CUC2, CUC3, RAX1 and LAS genes accumulate in overlapping domains in the axils of developing leaf primordia (Greb et al., 2003; Keller et al., 2006; Mueller et al., 2006; Vroemen et al., 2003).”
BackgroundSelf-citationTabuchi, H., Zhang, Y., Hattori, S., Omae, M., Shimizu‐Sato, S., Oikawa, T., Qian, Q., Nishimura, M., Kitano, H., Xie, H., et al. (2011) · The Plant Cell · doi:10.1105/tpc.111.088765 · Cited by 270 · see citing works
“In Arabidopsis, lateral suppressor (las) and regulator of axillary meristem (rax) mutants are defective in AM formation (Greb et al., 2003; Müller et al., 2006).”
BackgroundTERMINAL FLOWER1 Is a Mobile Signal ControllingArabidopsisArchitecture
Conti, L., & Bradley, D. J. (2007) · The Plant Cell · doi:10.1105/tpc.106.049767 · Cited by 263 · see citing works
“Genes expressed before TFL1 regulate axillary meristem initiation and growth and are specifically expressed there, while hormone targets influence axillary meristem growth (Schmitz and Theres, 2005; Beveridge, 2006; Keller et al., 2006; Muller et al., 2006).”
BackgroundTwo-Step Regulation of LAX PANICLE1 Protein Accumulation in Axillary Meristem Formation in Rice
Oikawa, T., & Kyozuka, J. (2009) · The Plant Cell · doi:10.1105/tpc.108.065425 · Cited by 251 · see citing works
“Functions of the recently identified regulators of AM formation, RAX and CUC genes, are yet to be determined in rice (Hibara et al., 2006; Keller et al., 2006; Müller et al., 2006; Raman et al., 2008).”
BackgroundMicroRNA171c-Targeted SCL6-II, SCL6-III, and SCL6-IV Genes Regulate Shoot Branching in Arabidopsis
Wang, L., Mai, Y., Zhang, Y., Luo, Q., & Yang, H. (2010) · Molecular Plant · doi:10.1093/mp/ssq042 · Cited by 245 · see citing works
Niwa, M., Daimon, Y., Kurotani, K., Higo, A., Pruneda-Paz, J. L., Breton, G., Mitsuda, N., Kay, S. A., Ohme‐Takagi, M., Endo, M., et al. (2013) · The Plant Cell · doi:10.1105/tpc.112.109090 · Cited by 229 · see citing works
“AM initiation requires the GRAS family gene LATERAL SUPPRESOR (Schumacher et al., 1999; Greb et al., 2003) and the Myb-like transcription factor (TF) REGULATOR OF AXILLARY MERISTEM1 (Keller et al., 2006; Müller et al., 2006).”
MethodCytokinin Signaling Activates WUSCHEL Expression during Axillary Meristem Initiation
Wang, J., Tian, C., Zhang, C., Shi, B., Cao, X., Zhang, T.-Q., Zhao, Z., Wang, J., & Jiao, Y. (2017) · The Plant Cell · doi:10.1105/tpc.16.00579 · Cited by 228 · see citing works
“Genetic studies in Arabidopsis thaliana and other species have shown that AM initiation is regulated by several transcription factors, suchasLATERALSUPPRESSOR (LAS),REGULATOROF AXILLARY MERISTEMS (RAX), and REVOLUTA (REV) (Talbert et al., 1995; Greb et al., 2003; Müller et al., 2006).”
BackgroundInfluentialRole of tomato <i>BRANCHED1</i>‐like genes in the control of shoot branching
Martín‐Trillo, M., Grandío, E. G., Serra, F., Marcel, F., Rodríguez‐Buey, M. L., Schmitz, G., Theres, K., Bendahmane, A., Dopazo, H., & Cubas, P. (2011) · The Plant Journal · doi:10.1111/j.1365-313x.2011.04629.x · Cited by 212 · see citing works
“AM initiation is controlled by lateral suppressor/ MONOCULM1 genes (Ls/Mc; Greb et al., 2003; Li et al., 2003; Schumacher et al., 1999), Blind/RAX1 genes (Schmitz et al., 2002; Keller et al., 2006; Muller et al., 2006), and LAX PANICLE genes (Komatsu et al., 2003).”
BackgroundSelf-citationThe Stem Cell Niche in Leaf Axils Is Established by Auxin and Cytokinin in <i>Arabidopsis</i>
Wang, Y., Wang, J., Shi, B., Yu, T., Qi, J., Meyerowitz, E. M., & Jiao, Y. (2014) · The Plant Cell · doi:10.1105/tpc.114.123083 · Cited by 207 · see citing works
“Our finding that ectopic cytokinin biosynthesis in the leaf axil can rescue AM initiation-deficient rax mutants indicates a possibility that RAX may be upstream of cytokinin signaling to promote the expression of the shoot meristem marker gene STM (Müller et al., 2006).”
BackgroundQin, Y., Wang, M., Tian, Y., He, W., Lu, H., & Xia, G. (2012) · Molecular Biology Reports · doi:10.1007/s11033-012-1550-y · Cited by 213 · see citing works
“metabolism [8], cellular morphogenesis [9], meristem formation [10], hormonal signaling [11] and biotic stress response [12].”
BackgroundXiao, R., Zhang, C., Guo, X., Li, H., & Lu, H. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22073560 · Cited by 207 · see citing works
Insights into the Diversification and Evolution of R2R3-MYB Transcription Factors in Plants
Jiang, C., & Rao, G. (2020) · PLANT PHYSIOLOGY · doi:10.1104/pp.19.01082 · Cited by 202 · see citing works
“The R2R3-MYB TFs of VIII-C are regulatory factors of meristem formation in liverworts and angiosperms (Schmitz et al., 2002; Keller et al., 2006; Müller et al., 2006; Yasui et al., 2019).”
BackgroundPatterns of Stem Cell Divisions Contribute to Plant Longevity
Burian, A., de Reuille, P. B., & Kuhlemeier, C. J. (2016) · Current Biology · doi:10.1016/j.cub.2016.03.067 · Cited by 200 · see citing works
Chen, L., Yang, H., Fang, Y., Guo, W., Chen, H., Zhang, X., Dai, W., Chen, S., Hao, Q., Yuan, S., et al. (2020) · Plant Biotechnology Journal · doi:10.1111/pbi.13496 · Cited by 198 · see citing works
“In addition, the BLIND genes, encoding proteins with an R2R3-MYB domain, have been reported to regulate the lateral meristems in tomato (Solanum lycopersicum) (Schmitz et al., 2002) and Arabidopsis thaliana (Muller et al., 2006).”
BackgroundHormonal regulation of branching in grasses
McSteen, P. (2009) · Plant Physiology · doi:10.1104/pp.108.129056 · Cited by 193 · see citing works
“R2 R3 Myb transcription factors RAX1,2,3/BLIND (Schmitz et al., 2002; Keller et al., 2006; Muller et al., 2006) play a role in eudicots, but a homolog in monocots has not yet been identified.”
BackgroundAxillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1
Tanaka, W., Ohmori, Y., Ushijima, T., Matsusaka, H., Matsushita, T., Kumamaru, T., Kawano, S., & Hirano, H. (2015) · The Plant Cell · doi:10.1105/tpc.15.00074 · Cited by 180 · see citing works
“…REGULATOR OF AXILLARY MERISTEMS, and REGULATOR OF AXILLARY MERISTEM FORMATION (ROX) in Arabidopsis thaliana (Greb et al., 2003; Keller et al., 2006; Müller et al., 2006; Yang et al., 2012); and Lateral suppressor (Ls) and Blind in tomato (Solanum lycopersicum) (Schumacher et al., 1999; Schmitz et…”
BackgroundWang, Q., Kohlen, W., Rossmann, S., Vernoux, T., & Theres, K. (2014) · The Plant Cell · doi:10.1105/tpc.114.123059 · Cited by 172 · see citing works
“Mutations in several other regulators, like REGULATOR OF AXILLARY MERISTEMS1 (Müller et al., 2006) or REGULATOR OF AXILLARY MERISTEM FORMATION (Yang et al., 2012), also affect AM formation in the vegetative, but not in the reproductive phase of shoot development.”
BackgroundSelf-citationHamberger, B. R., Ellis, M., Friedmann, M. C., Souza, C. D. A., Barbazuk, W. B., & Douglas, C. J. (2007) · Canadian Journal of Botany · doi:10.1139/b07-098 · Cited by 178 · see citing works
Goldshmidt, A., Alvarez, J. P., Bowman, J. L., & Eshed, Y. (2008) · The Plant Cell · doi:10.1105/tpc.107.057877 · Cited by 174 · see citing works
“By the same rationale, other meristem-primordia boundary factors, such as the CUP SHAPED COTYLEDON, RAX, and LOB genes, may play a role in processing YAB1 signals (Aida et al., 1999; Takada et al., 2001; Vroemen et al., 2003; Aida and Tasaka, 2006; Keller et al., 2006; Muller et al., 2006).”
BackgroundGenes for control of plant stature and form
Busov, V. B., Brunner, A. M., & Strauss, S. H. (2008) · New Phytologist · doi:10.1111/j.1469-8137.2007.02324.x · Cited by 172 · see citing works
“…et al. (2005); Kim & Kende (2002, 2004) BLIND (Bl) Myb transcription factor Reduced branching Knockout Arabidopsis, tomato Schmitz et al. (2002); Muller et al. (2006); Keller et al. (2006) LATERAL SUPPRESSOR (Ls) GRAS transcription factor Reduced branching Knockout Arabidopsis, tomato,…”
BackgroundDiverse roles of MYB transcription factors in plants
Zhang, D., Zhou, H., Zhang, Y., Zhao, Y., Zhang, Y., Feng, X., & Lin, H. (2025) · Journal of Integrative Plant Biology · doi:10.1111/jipb.13869 · Cited by 176 · see citing works
Lee, D.-K., Geisler, M., & Springer, P. S. (2009) · Development · doi:10.1242/dev.031971 · Cited by 164 · see citing works
“…not always correlated. las and rax mutants produce very few axillary meristems, but do not exhibit fusion (Greb et al., 2003; Keller et al., 2006; Müller et al., 2006), whereas loss-offunction lob mutants exhibit fusion between cauline leaves and axillary stems, but produce normal accessory…”
BackgroundInfluentialLi, Z., Peng, R., Tian, Y., Han, H., Xu, J., & Yao, Q. (2016) · Plant and Cell Physiology · doi:10.1093/pcp/pcw091 · Cited by 164 · see citing works
A Genomic Approach to Suberin Biosynthesis and Cork Differentiation
Soler, M., Serra, O., Molinas, M., Huguet, G., Fluch, S., & Figueras, M. (2007) · PLANT PHYSIOLOGY · doi:10.1104/pp.106.094227 · Cited by 160 · see citing works
“This gene shows 89% similarity to At1g35720, an Arabidopsis annexin that senses the Ca 2 1 signal elicited by ABA and transmits it downstream in the signaling pathway (Lee et al., 2004).”
BackgroundInfluentialRigal, A., Yordanov, Y. S., Perrone, I., Karlberg, A., Tisserant, É., Bellini, C., Busov, V. B., Martin, F. M., Kohler, A., Bhalerao, R. P., et al. (2012) · PLANT PHYSIOLOGY · doi:10.1104/pp.112.204453 · Cited by 161 · see citing works
“Müller et al. (2006) have shown that AtMYB36 was almost exclusively found in the root.”
BackgroundTwo-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis
Shi, B., Zhang, C., Tian, C., Wang, J., Wang, Q., Xu, T., Xu, Y., Ohno, C., Sablowski, R., Heisler, M. G., et al. (2016) · PLoS Genetics · doi:10.1371/journal.pgen.1006168 · Cited by 150 · see citing works
Self-citationMu, R., Cao, Y., Liu, Y.-F., Lei, G., Zou, H., Liao, Y., Wang, H., Zhang, W., Ma, B., Du, J., et al. (2009) · Cell Research · doi:10.1038/cr.2009.83 · Cited by 151 · see citing works
Genetics of Tillering in Rice and Barley
Hussien, A., Tavakol, E., Horner, D. S., Muñoz‐Amatriaín, M., Muehlbauer, G. J., & Rossini, L. (2014) · The Plant Genome · doi:10.3835/plantgenome2013.10.0032 · Cited by 148 · see citing works
“here are also examples of the genes identiied in eudicots that have not been identiied to date in monocots, such as the reduced-branching mutations in the REGULATOR OF AXILLARY MERISTEMS1, 2, 3 and BLIND genes of Arabidopsis and tomato (Schmitz et al., 2002; Keller et al., 2006; Müller et al., 2006).”
BackgroundHe, Q., Jones, D. C., Li, W., Xie, F., Ma, J., Sun, R., Wang, Q., Zhu, S., & Zhang, B. (2016) · Scientific Reports · doi:10.1038/srep22980 · Cited by 143 · see citing works
Guo, D., Zhang, J., Wang, X., Han, X., Wei, B., Wang, J., Li, B., Yu, H. Q., Huang, Q., Gu, H., et al. (2015) · The Plant Cell · doi:10.1105/tpc.15.00829 · Cited by 146 · see citing works
“The rax1-3 mutants produce fewer AMs during vegetative development, and the rax1-3 rax2-1 rax3-1 triple mutant lost nearly all AMs, suggesting that RAX genes play central roles during AM initiation (Keller et al., 2006; Müller et al., 2006).”
BackgroundInfluentialLi, X., Xue, C., Li, J., Qiao, X., Li, L., Yu, L., Huang, Y., & Wu, J. (2016) · Plant and Cell Physiology · doi:10.1093/pcp/pcw029 · Cited by 138 · see citing works
“…AtMYB61 PbrMYB149 AtMYB50 PbrMYB181 AtMYB55 PbrMYB122 AtMYB86 C10 (S14) PbrMYB180 AtMYB37 Vegetative development Keller et al. (2006); Müller et al. (2006) PbrMYB18 AtMYB36 PbrMYB98 AtMYB38 PbrMYB59 AtMYB87 PbrMYB143 AtMYB68 PbrMYB172…”
Schulze, S., Schäfer, B. N., Parizotto, E. A., Voinnet, O., & Theres, K. (2010) · The Plant Journal · doi:10.1111/j.1365-313x.2010.04359.x · Cited by 135 · see citing works
Self-citationLi, K., Xing, C., Yao, Z., & Huang, X. (2017) · Plant Biotechnology Journal · doi:10.1111/pbi.12708 · Cited by 127 · see citing works
“…signalling (Lee and Seo, 2015; Seo et al., 2009; Shim et al., 2013), phenylpropanoid biosynthesis (Borevitz et al., 2000), anthocyanin biosynthesis (Matsui et al., 2008; Park et al., 2008), signal transduction (Borevitz et al., 2000) and cell division (Muller et al., 2006; Ryu et al., 2005).”
BackgroundYang, F., Wang, Q., Schmitz, G., Müller, D., & Theres, K. (2012) · The Plant Journal · doi:10.1111/j.1365-313x.2012.04970.x · Cited by 127 · see citing works
Self-citationLi, C., & Lu, S. (2014) · BMC Genomics · doi:10.1186/1471-2164-15-277 · Cited by 127 · see citing works
“Additional file 3: Figure S2.”
BackgroundInfluentialUnequal genetic redundancies in Arabidopsis – a neglected phenomenon?
Briggs, G. A. D., Osmont, K. S., Shindo, C., Sibout, R., & Hardtke, C. S. (2006) · Trends in Plant Science · doi:10.1016/j.tplants.2006.08.005 · Cited by 124 · see citing works
Axillary meristem initiation — a way to branch out
Wang, Y., & Jiao, Y. (2017) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2017.09.001 · Cited by 129 · see citing works
Shoot Branching and Leaf Dissection in Tomato Are Regulated by Homologous Gene Modules
Busch, B. L., Schmitz, G., Rossmann, S., Piron, F., Ding, J., Bendahmane, A., & Theres, K. (2011) · The Plant Cell · doi:10.1105/tpc.111.087981 · Cited by 122 · see citing works
“In addition to the nine genes in tomato, we found six homologs inArabidopsis (Müller et al., 2006) and seven in grape (Vitis vinifera).”
BackgroundMethodInfluentialSelf-citationA molecular framework to study periderm formation in Arabidopsis
Wunderling, A., Ripper, D., Barra-Jiménez, A., Mahn, S., Sajak, K., Ben-Targem, M., & Ragni, L. (2018) · New Phytologist · doi:10.1111/nph.15128 · Cited by 115 · see citing works
Wang, Z., Tang, J., Hu, R., Wu, P., Hou, X.-L., Song, X., & Xiong, A. (2015) · BMC Genomics · doi:10.1186/s12864-015-1216-y · Cited by 109 · see citing works
“The C30 (S14) subfamily containing Arabidopsis MYBs (AtMYB37, 38, 68 and 84) has been reported to function in the regulation of root development and axillary meristems [43,44].”
Background<i>Divide et impera</i>: boundaries shape the plant body and initiate new meristems
Wang, Q., Hasson, A., Rossmann, S., & Theres, K. (2016) · New Phytologist · doi:10.1111/nph.13641 · Cited by 106 · see citing works
“Furthermore, a small subgroupofMYB genes, related to the tomato Blind gene, were shown to modulate axillary meristem formation along the shoot axis in tomato (Schmitz et al., 2002) and Arabidopsis (Keller et al., 2006; M€uller et al., 2006).”
BackgroundSelf-citationThe molecular and genetic regulation of shoot branching
Luo, Z., Janssen, B. J., & Snowden, K. C. (2021) · PLANT PHYSIOLOGY · doi:10.1093/plphys/kiab071 · Cited by 104 · see citing works
Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat
Zhang, B., Liu, X., Xu, W., Chang, J., Li, A., Mao, X., Zhang, X., & Jing, R. (2015) · Scientific Reports · doi:10.1038/srep12211 · Cited by 102 · see citing works
Beyond the Divide: Boundaries for Patterning and Stem Cell Regulation in Plants
Hepworth, S. R., & Pautot, V. (2015) · Frontiers in Plant Science · doi:10.3389/fpls.2015.01052 · Cited by 102 · see citing works
“REGULATOROFAXILLARYMERISTEM1 (RAX1) is aMYB transcription factor that specifies AMs in redundancy with RAX2 and RAX3 (Keller et al., 2006; Muller et al., 2006).”
BackgroundTavakol, E., Okagaki, R., Verderio, G., Shariati J., V., Hussien, A., Bilgic, H., Scanlon, M. J., Todt, N. R., Close, T. J., Druka, A., et al. (2015) · Plant Physiology · doi:10.1104/pp.114.252882 · Cited by 97 · see citing works
“MERISTEMS3, and BLIND genes of Arabidopsis and tomato (Schmitz et al., 2002; Keller et al., 2006; Müller et al., 2006) are conserved in eudicots but have not been identified in monocot genomes (Keller et al., 2006; Müller et al., 2006).”
BackgroundZhang, Q., Wang, J., Wang, L., Wang, J., Wang, Q., Yu, P., Bai, M., & Fan, M. (2019) · Journal of Integrative Plant Biology · doi:10.1111/jipb.12818 · Cited by 95 · see citing works
Auxin and cytokinin coordinate the dormancy and outgrowth of axillary bud in strawberry runner
Qiu, Y., Guan, S., Wen, C., Li, P., Gao, Z., & Chen, X. (2019) · BMC Plant Biology · doi:10.1186/s12870-019-2151-x · Cited by 91 · see citing works
Nakano, T., Fujisawa, M., Shima, Y., & Ito, Y. (2013) · BMC Plant Biology · doi:10.1186/1471-2229-13-40 · Cited by 89 · see citing works
“RAX , CUC and LAS , the homologues of Bl , GOB and Ls , respectively, are expressed in a boundary region between the SAM and leaf primordium [84,85,89].”
Yu, Y., Wu, Z., Lü, K., Bi, C., Liang, S., Wang, X., & Zhang, D.-P. (2015) · Plant Molecular Biology · doi:10.1007/s11103-015-0411-1 · Cited by 84 · see citing works
“This is consistent with previous report that MYB37 is more abundantly expressed in root than leaf and flower (Müller et al. 2006).”
BackgroundResultInfluentialGenome-wide identification and characterization of R2R3MYB family in Solanum lycopersicum
Zhao, P., Li, Q., Li, J., Wang, L., & Ren, Z. (2014) · Molecular Genetics and Genomics · doi:10.1007/s00438-014-0879-4 · Cited by 85 · see citing works
“…developmental processes such as anther and pollen development (Brownfield et al. 2009; Millar and Gubler 2005) and axillary meristem formation (Müller et al. 2006; Keller et al. 2006), plant defense and response to biotic and abiotic stresses (Urao et al. 1993; Daniel et al. 1999; Sugimoto et…”
BackgroundYang, M., Yang, Q., Fu, T., & Zhou, Y. (2010) · Plant Cell Reports · doi:10.1007/s00299-010-0940-7 · Cited by 85 · see citing works
“Disruption of LAS resulted in inhibition of lateral shoot formation in Arabidopsis (Greb et al. 2003; Müller et al. 2006).”
Common regulatory themes in meristem development and whole-plant homeostasis
Beveridge, C. A., Mathesius, U., ROSE, R., & Gresshoff, P. M. (2006) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2006.11.011 · Cited by 83 · see citing works
SPL13 regulates shoot branching and flowering time in Medicago sativa
Gao, R., Gruber, M. Y., Amyot, L., & Hannoufa, A. (2017) · Plant Molecular Biology · doi:10.1007/s11103-017-0683-8 · Cited by 83 · see citing works
A variant of LEAFY reveals its capacity to stimulate meristem development by inducing RAX1
Chahtane, H., Vachon, G., Masson, M. L., Thévenon, E., Périgon, S., Mihajlović, N., Kalinina, A., Michard, R., Moyroud, E., Monniaux, M., et al. (2013) · The Plant Journal · doi:10.1111/tpj.12156 · Cited by 81 · see citing works
“, 2006), (iii) RAX1 is required for the emergence of axillary meristems in various conditions and genetic backgrounds (Keller et al., 2006; Muller et al., 2006; Yang et al., 2012), and (iv) RAX1 up-regulation in isolated Pro35S:LFY leaves (Figure 4e) indicates that LFY is sufficient for this induction: this regulation…”
BackgroundMethodInfluentialChomicki, G., Coiro, M., & Renner, S. S. (2017) · Annals of Botany · doi:10.1093/aob/mcx113 · Cited by 81 · see citing works
The WUSCHEL-related homeobox 5a (PtoWOX5a) is involved in adventitious root development in poplar
Li, J., Zhang, J., Jia, H., et al. (2017) · Tree Physiology · doi:10.1093/treephys/tpx118 · Cited by 75 · see citing works
Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development
Lewis, J. M., Mackintosh, C. A., Shin, S., Gilding, E., Kravchenko, S., Baldridge, G., Zeyen, R., & Muehlbauer, G. J. (2008) · Plant Cell Reports · doi:10.1007/s00299-008-0543-8 · Cited by 75 · see citing works
“…in Arabidopsis; tiller inhibition number3 in wheat; and uniculm2, uniculm4, low number of tillers1, absent lower laterals, intermedium spike-b and semi-brachytic (uzu) in barley (Babb and Muehlbauer 2003; McSteen and Leyser 2005; Bennett and Leyser 2006; Muller et al. 2006; Kuraparthy et al. 2007).”
Genome-Wide Identification and Characterization of R2R3MYB Family in Cucumis sativus
Li, Q., Zhang, C., Li, J., Wang, L., & Ren, Z. (2012) · PLoS ONE · doi:10.1371/journal.pone.0047576 · Cited by 74 · see citing works
“A growing body of evidence suggests that R2R3MYB transcription factors are involved in many significant physiological and biochemical processes [1,9,10], such as the regulation of secondary metabolism [5,11–15], the fate of epidermal cells [14,16–19], the control of the cell cycle [20,21], anther and pollen developmen…”
BackgroundGou, J., Fu, C., Liu, S., Tang, C., Debnath, S., Flanagan, A., Ge, Y., Tang, Y., Jiang, Q., Larson, P. R., et al. (2017) · New Phytologist · doi:10.1111/nph.14758 · Cited by 74 · see citing works
“In dicot plants like tomato, these molecular mechanism studies involve both kinds of buds (Schumacher et al., 1999; Muller et al., 2006; Martin-Trillo et al., 2011).”
BackgroundLiu, C., Wang, X., Xu, Y., Deng, X., & Xu, Q. (2014) · Molecular Biology Reports · doi:10.1007/s11033-014-3563-1 · Cited by 71 · see citing works
“8), suggesting a similar functional feature in the axillary meristem formation [11, 62].”
Regulation of Shoot Apical Meristem and Axillary Meristem Development in Plants
Xue, Z., Liu, L., & Zhang, C. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21082917 · Cited by 71 · see citing works
“In rax1 rax2 rax3 triple mutants, most axillary buds cannot form [47].”
BackgroundHong, S. H., Kim, H. J., Ryu, J. S., Choi, H., Jeong, S., Shin, J., Choi, G., & Nam, H. G. (2008) · The Plant Journal · doi:10.1111/j.1365-313x.2008.03508.x · Cited by 71 · see citing works
Sun, P., Zhu, X., Huang, X., et al. (2014) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2014.02.022 · Cited by 68 · see citing works
“, 2013), organ growth and development (Ryu et al., 2005; Müller et al., 2006), cell cycle progression (Mu et al.”
BackgroundKubo, H., Nozawa, S., Hiwatashi, T., et al. (2018) · Journal of Plant Research · doi:10.1007/s10265-018-1044-7 · Cited by 66 · see citing works
Nambeesan, S. U., Mandel, J. R., Bowers, J., Marek, L. F., Ebert, D., Corbi, J., Rieseberg, L. H., Knapp, S. J., & Burke, J. M. (2015) · BMC Plant Biology · doi:10.1186/s12870-015-0458-9 · Cited by 65 · see citing works
“As noted above, genes such as REV, LAS, and RAX in Arabidopsis and their orthologs in rice and tomato play a role during axillary meristem initiation and bud formation [44-46,65-67].”
BackgroundRizzo, P., Altschmied, L., Ravindran, B. M., et al. (2020) · Genes · doi:10.3390/genes11101210 · Cited by 65 · see citing works
“MYB38 is the orthologue of RAX2 from Arabidopsis thaliana, and is known to be involved in developmental processes by regulating lateral patterning and lateral meristem initiation [55].”
BackgroundEhrenreich, I. M., Stafford, P. A., & Purugganan, M. D. (2007) · Genetics · doi:10.1534/genetics.107.071928 · Cited by 64 · see citing works
“…node patterning in the model plant species Arabidopsis thaliana, including LATERAL SUPPRESSOR (LAS) (Greb et al. 2003), SHOOT MERISTEMLESS (STM) (Long et al. 1996), REVOLUTA (REV) (Talbert et al. 1995), and the REGULATORS OF AXILLARY MERISTEMS (RAX) genes (Keller et al. 2006; Muller et al. 2006).”
BackgroundHe, Y., Wu, D., Wei, D., Fu, Y., Cui, Y., Dong, H., Tan, C., & Qian, W. (2017) · Scientific Reports · doi:10.1038/s41598-017-15976-4 · Cited by 64 · see citing works
The transcription factor AtDOF4.2 regulates shoot branching and seed coat formation in Arabidopsis
Zou, H., Zhang, Y.-Q., Wei, W., Chen, H., Song, Q., Liu, Y.-F., Zhao, M.-Y., Wang, F., Zhang, B., Lin, Q. F., et al. (2012) · Biochemical Journal · doi:10.1042/bj20110060 · Cited by 62 · see citing works
Overexpression of a maize MYB48 gene confers drought tolerance in transgenic arabidopsis plants
Wang, Y., Wang, Q., Liu, M., Bo, C., Wang, X., Ma, Q., Cheng, B., & Cai, R. (2017) · Journal of Plant Biology · doi:10.1007/s12374-017-0273-y · Cited by 61 · see citing works
“…functions in plants, including cell cycle control (Araki et al. 2004), phenylpropanoid metabolism (Zhang et al. 2016), flavonoid biosynthesis (Zhao et al. 2013), cellular morphogenesis (Higginson et al. 2003), meristem formation (Muller et al. 2006), and biotic stress response (Lee et al. 2001).”
Kodama, M., Brinch‐Pedersen, H., Sharma, S., Holme, I. B., Joernsgaard, B., Dzhanfezova, T., Amby, D. B., Vieira, F. G., Liu, S., & Gilbert, M. T. P. (2018) · BMC Genomics · doi:10.1186/s12864-018-5135-6 · Cited by 61 · see citing works
“RAX genes are involved in shoot branching in Arabidopsis [59, 60].”
BackgroundWang, X., Liu, D., Li, A., Sun, X., Zhang, R., Wu, L., Liang, Y., & Mao, L. (2013) · PLoS ONE · doi:10.1371/journal.pone.0055238 · Cited by 60 · see citing works
“In Arabidopsis, the Bl homolog REGULATOR OF AXILLARY MERISTEMS1 (RAX1) is also required for lateral meristem initiation [27], [28].”
BackgroundPlant Inflorescence Architecture: The Formation, Activity, and Fate of Axillary MeristemsPreprint
Zhu, Y., & Wagner, D. (2019) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a034652 · Cited by 59 · see citing works
“RAX1 acts in parallel with LAS in axillary meristem initiation and both genes promote establishment/maintenance of STM expression in axillary meristems (Greb et al. 2003; Keller et al. 2006; Müller et al. 2006).”
BackgroundXin, W., Wang, Z., Liang, Y. Q., Wang, Y., & Hu, Y. (2017) · Journal of Plant Physiology · doi:10.1016/j.jplph.2017.03.017 · Cited by 54 · see citing works
Yasui, Y., Tsukamoto, S., Sugaya, T., Nishihama, R., Wang, Q., Kato, H., Yamato, K. T., Fukaki, H., Mimura, T., Kubo, H., et al. (2019) · Current Biology · doi:10.1016/j.cub.2019.10.004 · Cited by 55 · see citing works
Self-citationChen, X., Zhou, X., Xi, L., Li, J., Zhao, R., Ma, N., & Zhao, L. (2013) · PLoS ONE · doi:10.1371/journal.pone.0061717 · Cited by 54 · see citing works
“During the vegetative growth phase of Arabidopsis, LAS [6], RAX [7], and ROX [8] are required to initiate AMs.”
BackgroundA Novel Function of TDIF-Related Peptides: Promotion of Axillary Bud Formation
Yaginuma, H., Hirakawa, Y., Kondo, Y., Ohashi‐Ito, K., & Fukuda, H. (2011) · Plant and Cell Physiology · doi:10.1093/pcp/pcr081 · Cited by 55 · see citing works
Gemma cup and gemma development in Marchantia polymorpha
Kato, H., Yasui, Y., & Ishizaki, K. (2020) · New Phytologist · doi:10.1111/nph.16655 · Cited by 55 · see citing works
Bian, S., Jin, D., Sun, G., Shan, B., Zhou, H., Wang, J., Zhai, L., & Li, X. (2020) · Gene · doi:10.1016/j.gene.2020.144803 · Cited by 54 · see citing works
Photosynthetic photon flux density and phytochrome B interact to regulate branching in Arabidopsis
Su, H., Abernathy, S. D., White, R. H., & Finlayson, S. A. (2011) · Plant Cell & Environment · doi:10.1111/j.1365-3040.2011.02393.x · Cited by 54 · see citing works
Transcriptional programs regulated by both LEAFY and APETALA1 at the time of flower formation
Winter, C. M., Yamaguchi, N., Wu, M., et al. (2015) · Physiologia Plantarum · doi:10.1111/ppl.12357 · Cited by 52 · see citing works
“A variant of LEAFY reveals its capacity to stimulate meristem development by inducing RAX1.”
BackgroundThe genetics of barley low-tillering mutants: low number of tillers-1 (lnt1)
Dabbert, T. A., Okagaki, R. J., Cho, S., Heinen, S. J., Boddu, J., & Muehlbauer, G. J. (2010) · Theoretical and Applied Genetics · doi:10.1007/s00122-010-1342-5 · Cited by 53 · see citing works
“A mutation in one RAX gene has a small eVect on branching and there is little overlap in the regions aVected by each individual rax mutant ( Muller et al. 2006 ).”
BackgroundInfluentialThe barren stalk2 Gene Is Required for Axillary Meristem Development in Maize
Yao, H., Skirpan, A. L., Wardell, B., Matthes, M. S., Best, N. B., McCubbin, T., Durbak, A. R., Smith, T., Malcomber, S. T., & McSteen, P. (2019) · Molecular Plant · doi:10.1016/j.molp.2018.12.024 · Cited by 53 · see citing works
Control of Plant Branching by the CUC2/CUC3-DA1-UBP15 Regulatory Module
Li, Y., Xia, T., Gao, F., & Li, Y. (2020) · The Plant Cell · doi:10.1105/tpc.20.00012 · Cited by 52 · see citing works
“In Arabidopsis, MYB transcription factors RAX1, RAX2, and RAX3 act redundantly to control the initiation of AMs (Keller et al., 2006; Müller et al., 2006).”
BackgroundInfluentialShoot branching regulation and signaling
Yan, Y., Zhao, N., Tang, H., Gong, B., & Shi, Q. (2020) · Plant Growth Regulation · doi:10.1007/s10725-020-00640-1 · Cited by 50 · see citing works
Molecular mechanisms controlling plant organ abscission
Nakano, T., & Ito, Y. (2013) · Plant Biotechnology · doi:10.5511/plantbiotechnology.13.0318a · Cited by 49 · see citing works
“…homologs of Arabidopsis CUP-SHAPED COTYLEDON (CUC), LATERAL SUPPRESSOR (LAS) and REGULATOR OF AXILLARY MERISTEMS (RAX), respectively, and those Arabidopsis homologs act as regulators of axillary meristem (AM) development (Greb et al. 2003; Keller et al. 2006; Muller et al. 2006; Raman et al. 2008).”
BackgroundGoing with the wind – Adaptive dynamics of plant secondary meristems
Agustí, J., & Greb, T. (2012) · Mechanisms of Development · doi:10.1016/j.mod.2012.05.011 · Cited by 48 · see citing works
A Collection of Conserved Noncoding Sequences to Study Gene Regulation in Flowering Plants
de Velde, J. V., Bel, M. V., Vaneechoutte, D., & Vandepoele, K. (2016) · PLANT PHYSIOLOGY · doi:10.1104/pp.16.00821 · Cited by 48 · see citing works
“MYB84 is part of the set of three regulators of axillary meristem genes that are partially redundant regulators of axillary meristem formation (Müller et al., 2006).”
BackgroundHuang, X., Ding, J., Effgen, S., Turck, F., & Koornneef, M. (2013) · New Phytologist · doi:10.1111/nph.12306 · Cited by 47 · see citing works
RGN1 controls grain number and shapes panicle architecture in rice
Li, G., Xu, B., Zhang, Y.-P., Xu, Y., Khan, N. U., Xie, J., Sun, X., Guo, H., Wu, Z., Wang, X., et al. (2021) · Plant Biotechnology Journal · doi:10.1111/pbi.13702 · Cited by 47 · see citing works
“From protein blast results, we found that the RGN1 protein was a homolog of RAX in Arabidopsis (Figure S8) that functioned redundantly in control of shoot branching (Keller et al., 2006; Muller et al., 2006).”
Background
- Authors
- Müller, D., Schmitz, G., & Theres, K.
- Affiliations
- Max Planck Institute for Plant Breeding Research, D-50829 Cologne, Germany
- Max Planck Institute for Plant Breeding Research (DE)
- Venue
- The Plant Cell
- Publisher
- Oxford University Press (OUP)
- Published
- 2006-02-03
- Volume
- 18
- Issue
- 3
- Pages
- 586-597
- ISSN
- 1040-4651 (ISSN-L)
- 1532-298X
- PMC
- PMC1383635
- OpenAlex
- W2126644176
- Cited by
- 303
- References
- 37
- Citations by year
- 2026: 11 · 2025: 21 · 2024: 17 · 2023: 17 · 2022: 27 · 2021: 25 · 2020: 19 · 2019: 11 · 2018: 12 · 2017: 18 · 2016: 15 · 2015: 21 · 2014: 10 · 2013: 11 · 2012: 11
- FWCI
- 14.00
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model (vor)
- Locations
- The Plant Cell (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (submittedVersion)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Molecular Biology Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Plant Reproductive Biology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Plant Gene Expression Analysis
- Keywords
- axillary meristem initiation, lateral meristem, shoot branching, secondary meristems, SHOOT MERISTEMLESS, gene redundancy, plant architecture, Arabidopsis thaliana
- MeSH terms
- Mutation, Phenotype, Phylogeny, RNA, Messenger, Transcription Factors, Arabidopsis
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