The gut microbiome restores intrinsic and extrinsic nerve function in germ‐free mice accompanied by changes in calbindin
Abstract
Background: The microbiome is essential for normal myenteric intrinsic primary afferent neuron ( IPAN ) excitability. These neurons control gut motility and modulate gut–brain signaling by exciting extrinsic afferent fibers innervating the enteric nervous system via an IPAN to extrinsic fiber sensory synapse. We investigated effects of germ‐free ( GF ) status and conventionalization on extrinsic sensory fiber discharge in the mesenteric nerve bundle and IPAN electrophysiology, and compared these findings with those from specific pathogen‐free ( SPF ) mice. As we have previously shown that the IPAN calcium‐dependent slow afterhyperpolarization ( sAHP ) is enhanced in GF mice, we also examined the expression of the calcium‐binding protein calbindin in these neurons in these different animal groups. Methods: IPAN sAHP and mesenteric nerve multiunit discharge were recorded using ex vivo jejunal gut segments from SPF , GF , or conventionalized ( CONV ) mice. IPAN s were excited by adding 5 μM TRAM ‐34 to the serosal superfusate. We probed for calbindin expression using immunohistochemical techniques. Key Results: SPF mice had a 21% increase in mesenteric nerve multiunit firing rate and CONV mice a 41% increase when IPAN s were excited by TRAM ‐34. For GF mice, this increase was barely detectable (2%). TRAM ‐34 changed sAHP area under the curve by −77 for SPF , +3 for GF , or −54% for CONV animals. Calbindin‐immunopositive neurons per myenteric ganglion were 36% in SPF , 24% in GF , and 52% in CONV animals. Conclusions & Inferences: The intact microbiome is essential for normal intrinsic and extrinsic nerve function and gut–brain signaling.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In germ-free mice, colonization of the gut microbiota is critical for the development and maturation of the ENS.
“In germ-free mice, colonization of the gut microbiota is critical for the development and maturation of the ENS51.”
From The gut microbiota and the brain–gut–kidney axis in hypertension and chronic kidney disease (2018) · cites this paper as [51]
Cites
Mind-altering microorganisms: the impact of the gut microbiota on brain and behaviour
Cryan, J. F., & Dinan, T. G. (2012) · Nature Reviews Neuroscience · doi:10.1038/nrn3346 · Cited by 4,572 · see citing works
Bravo, J. A., Forsythe, P., Chew, M. V., Escaravage, E., Savignac, H. M., Dinan, T. G., Bienenstock, J., & Cryan, J. F. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1102999108 · Cited by 3,888 · see citing works
Self-citationNormal gut microbiota modulates brain development and behavior
Heijtz, R. D., Wang, S., Anuar, F., Qian, Y., Björkholm, B., Samuelsson, A., Hibberd, M. L., Forssberg, H., & Pettersson, S. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1010529108 · Cited by 3,228 · see citing works
Sudo, N., Chida, Y., Aiba, Y., Sonoda, J., Oyama, N., Yu, X., Kubo, C., & Koga, Y. (2004) · The Journal of Physiology · doi:10.1113/jphysiol.2004.063388 · Cited by 2,735 · see citing works
Human nutrition, the gut microbiome and the immune system
Kau, A. L., Ahern, P. P., Griffin, N. W., Goodman, A. L., & Gordon, J. I. (2011) · Nature · doi:10.1038/nature10213 · Cited by 2,588 · see citing works
Gut–brain axis: How the microbiome influences anxiety and depression
Foster, J. A., & McVey Neufeld, K.-A. (2013) · Trends in Neurosciences · doi:10.1016/j.tins.2013.01.005 · Cited by 2,460 · see citing works
Bercik, P., Denou, E., Collins, J., Jackson, W., Lu, J., Jury, J., Deng, Y., Blennerhassett, P., Macri, J., McCoy, K. D., et al. (2011) · Gastroenterology · doi:10.1053/j.gastro.2011.04.052 · Cited by 1,748 · see citing works
The interplay between the intestinal microbiota and the brain
Collins, S. M., Surette, M., & Bercik, P. (2012) · Nature Reviews Microbiology · doi:10.1038/nrmicro2876 · Cited by 1,611 · see citing works
Interactions between commensal intestinal bacteria and the immune system
Macpherson, A. J., & Harris, N. L. (2004) · Nature reviews. Immunology · doi:10.1038/nri1373 · Cited by 1,607 · see citing works
Neufeld, K. M., Kang, N., Bienenstock, J., & Foster, J. A. (2011) · Neurogastroenterology & Motility · doi:10.1111/j.1365-2982.2010.01620.x · Cited by 1,392 · see citing works
Self-citationBrain-gut-microbe communication in health and disease
Grenham, S., Clarke, G., Cryan, J. F., & Dinan, T. G. (2011) · Frontiers in Physiology · doi:10.3389/fphys.2011.00094 · Cited by 952 · see citing works
Wulff, H., Miller, M. J., Hänsel, W., Grissmer, S., Cahalan, M. D., & Chandy, K. G. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.97.14.8151 · Cited by 605 · see citing works
Gut microbial products regulate murine gastrointestinal motility via Toll-like receptor 4 signaling
Anitha, M., Vijay–Kumar, M., Sitaraman, S. V., Gewirtz, A. T., & Srinivasan, S. (2012) · Gastroenterology · doi:10.1053/j.gastro.2012.06.034 · Cited by 397 · see citing works
Kunze, W. A., Mao, Y., Wang, B., Huizinga, J. D., Ma, X., Forsythe, P., & Bienenstock, J. (2009) · Journal of Cellular and Molecular Medicine · doi:10.1111/j.1582-4934.2009.00686.x · Cited by 328 · see citing works
Self-citationStaley, K. J., Otis, T. S., & Módy, I. (1992) · Journal of Neurophysiology · doi:10.1152/jn.1992.67.5.1346 · Cited by 326 · see citing works
Immunohistochemical analysis of neuron types in the mouse small intestine
Qu, Z., Thacker, M., Castelucci, P., Bagyánszki, M., Epstein, M. L., & Furness, J. B. (2008) · Cell and Tissue Research · doi:10.1007/s00441-008-0684-7 · Cited by 320 · see citing works
Husebye, E., Hellström, P. M., Sundler, F., Chen, J., & Midtvedt, T. (2001) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.2001.280.3.g368 · Cited by 319 · see citing works
Intestinal microbiota influence the early postnatal development of the enteric nervous system
Collins, J., Borojevic, R., Verdu, E. F., Huizinga, J. D., & Ratcliffe, E. M. (2014) · Neurogastroenterology & Motility · doi:10.1111/nmo.12236 · Cited by 318 · see citing works
Effects of intestinal microbiota on anxiety-like behavior
Neufeld, K.-A. M., Kang, N., Bienenstock, J., & Foster, J. A. (2011) · Communicative & Integrative Biology · doi:10.4161/cib.15702 · Cited by 311 · see citing works
Self-citationBrun, P., Giron, M. C., Qesari, M., Porzionato, A., Caputi, V., Zoppellaro, C., Banzato, S., Grillo, A. R., Spagnol, L., De Caro, R., et al. (2013) · Gastroenterology · doi:10.1053/j.gastro.2013.08.047 · Cited by 300 · see citing works
McVey Neufeld, K. A., Mao, Y. K., Bienenstock, J., Foster, J. A., & Kunze, W. A. (2013) · Neurogastroenterology & Motility · doi:10.1111/nmo.12049 · Cited by 299 · see citing works
Self-citationProgramming of Host Metabolism by the Gut Microbiota
Bäckhed, F. (2011) · Annals of Nutrition and Metabolism · doi:10.1159/000328042 · Cited by 256 · see citing works
Perez-Burgos, A., Wang, B., Mao, Y.-K., Mistry, B., Neufeld, K.-A. M., Bienenstock, J., & Kunze, W. (2013) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00128.2012 · Cited by 235 · see citing works
Self-citationIyer, L. M., Aravind, L., Coon, S. L., Klein, D. C., & Koonin, E. V. (2004) · Trends in Genetics · doi:10.1016/j.tig.2004.05.007 · Cited by 219 · see citing works
Mao, Y.-K., Kasper, D. L., Wang, B., Forsythe, P., Bienenstock, J., & Kunze, W. A. (2013) · Nature Communications · doi:10.1038/ncomms2478 · Cited by 178 · see citing works
Self-citationHusebye, E., Hellström, P. M., & Midtvedt, T. (1994) · Digestive Diseases and Sciences · doi:10.1007/bf02087542 · Cited by 169 · see citing works
Gut microbiota, the pharmabiotics they produce and host health
Patterson, E., Cryan, J. F., Fitzgerald, G. F., Ross, R. P., Dinan, T. G., & Stanton, C. (2014) · Proceedings of The Nutrition Society · doi:10.1017/s0029665114001426 · Cited by 165 · see citing works
Wulff, H., Gutman, G. A., Cahalan, M. D., et al. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m105231200 · Cited by 149 · see citing works
On communication between gut microbes and the brain
Forsythe, P., Kunze, W. A., & Bienenstock, J. (2012) · Current Opinion in Gastroenterology · doi:10.1097/mog.0b013e3283572ffa · Cited by 137 · see citing works
Self-citationQuantification of neurons in the myenteric plexus: an evaluation of putative pan-neuronal markers
Phillips, R. J., Hargrave, S. L., Rhodes, B. S., et al. (2003) · Journal of Neuroscience Methods · doi:10.1016/j.jneumeth.2003.10.004 · Cited by 135 · see citing works
Characterization of Myenteric Sensory Neurons in the Mouse Small Intestine
Mao, Y., Wang, B., & Kunze, W. (2006) · Journal of Neurophysiology · doi:10.1152/jn.00204.2006 · Cited by 121 · see citing works
Self-citationThe calcium‐activated potassium conductance in guinea‐pig myenteric neurones
Morita, K., North, R. A., & Tokimasa, T. (1982) · The Journal of Physiology · doi:10.1113/jphysiol.1982.sp014306 · Cited by 121 · see citing works
Plasticity in the enteric nervous system
Giaroni, C., De Ponti, F., Cosentino, M., Lecchini, S., & Frigo, G. (1999) · Gastroenterology · doi:10.1016/s0016-5085(99)70295-7 · Cited by 119 · see citing works
Li, Z., Decavel, C., & Hatton, G. I. (1995) · The Journal of Physiology · doi:10.1113/jphysiol.1995.sp020993 · Cited by 112 · see citing works
Plasticity in serotonin control mechanisms in the gut
Gershon, M. D. (2003) · Current Opinion in Pharmacology · doi:10.1016/j.coph.2003.07.005 · Cited by 111 · see citing works
Calretinin: Modulator of neuronal excitability
Camp, A. J., & Wijesinghe, R. (2009) · The International Journal of Biochemistry & Cell Biology · doi:10.1016/j.biocel.2009.05.007 · Cited by 108 · see citing works
Wang, B., Mao, Y., Diorio, C. J., Wang, L., Huizinga, J. D., Bienenstock, J., & Kunze, W. (2009) · Neurogastroenterology & Motility · doi:10.1111/j.1365-2982.2009.01384.x · Cited by 106 · see citing works
Self-citationWang, B., Mao, Y., Diorio, C. J., Pasyk, M., Wu, R., Bienenstock, J., & Kunze, W. (2010) · The FASEB Journal · doi:10.1096/fj.09-153841 · Cited by 98 · see citing works
Self-citationThe gut-brain axis rewired: adding a functional vagal nicotinic “sensory synapse”
Perez‐Burgos, A., Mao, Y., Bienenstock, J., & Kunze, W. A. (2014) · The FASEB Journal · doi:10.1096/fj.13-245282 · Cited by 91 · see citing works
Self-citationGalligan, J. J., Furness, J. B., & Costa, M. (1989) · Gastroenterology · doi:10.1016/0016-5085(89)91683-1 · Cited by 84 · see citing works
Analysis of Whole-cell Currents by Patch Clamp of Guinea-pig Myenteric Neurones in Intact Ganglia
Rugiero, F., Gola, M., Kunze, W. A. A., Reynaud, J., Furness, J. B., & Clerc, N. (2002) · The Journal of Physiology · doi:10.1113/jphysiol.2001.013051 · Cited by 79 · see citing works
Self-citationKamm, K., Hoppe, S., Breves, G., Schröder, B., & Schemann, M. (2004) · Neurogastroenterology & Motility · doi:10.1046/j.1365-2982.2003.00458.x · Cited by 70 · see citing works
Distribution of growth-associated protein, B-50 (GAP-43) in the mammalian enteric nervous system
Sharkey, K. A., Coggins, P. J., Tetzlaff, W., Zwiers, H., Bisby, M. A., & Js, D. (1990) · Neuroscience · doi:10.1016/0306-4522(90)90370-j · Cited by 69 · see citing works
Velumian, A. A., & Carlen, P. L. (1999) · The Journal of Physiology · doi:10.1111/j.1469-7793.1999.0201z.x · Cited by 59 · see citing works
Hillsley, K., Kenyon, J. L., & Smith, T. K. (2000) · Journal of Neurophysiology · doi:10.1152/jn.2000.84.6.2777 · Cited by 57 · see citing works
Enteric nervous plasticity and development: dependence on neurotrophic factors
von Boyen, G. B. T., Reinshagen, M., Steinkamp, M., Adler, G., & Kirsch, J. (2002) · Journal of Gastroenterology · doi:10.1007/s005350200093 · Cited by 43 · see citing works
Ferens, D. M., Baell, J. B., Lessène, G., Smith, J. E., & Furness, J. B. (2007) · Neurogastroenterology & Motility · doi:10.1111/j.1365-2982.2007.00898.x · Cited by 38 · see citing works
Nguyen, T. V., Matsuyama, H., Baell, J. B., Hunne, B., Fowler, C. J., Smith, J. E., Nurgali, K., & Furness, J. B. (2007) · Journal of Neurophysiology · doi:10.1152/jn.00935.2006 · Cited by 34 · see citing works
Zhang, L., Zhang, Y., Tian, G. F., Wallace, M. C., & Eubanks, J. H. (1999) · Brain Research · doi:10.1016/s0006-8993(99)01458-4 · Cited by 12 · see citing works
Arabadzisz, D., Ylinen, A., & Emri, Z. (2002) · Neuroscience Letters · doi:10.1016/s0304-3940(02)00864-9 · Cited by 9 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Cryan, J. F., O'Riordan, K. J., Cowan, C. S. M., Sandhu, K. V., Bastiaanssen, T. F. S., Boehme, M., Codagnone, M. G., Cussotto, S., Fulling, C., Golubeva, A. V., et al. (2019) · Physiological Reviews · doi:10.1152/physrev.00018.2018 · Cited by 5,286 · see citing works
The gut microbiota and the brain–gut–kidney axis in hypertension and chronic kidney disease
Yang, T., Richards, E. M., Pepine, C. J., & Raizada, M. K. (2018) · Nature Reviews Nephrology · doi:10.1038/s41581-018-0018-2 · Cited by 753 · see citing works
Luczynski, P., McVey Neufeld, K.-A., Oriach, C. S., Clarke, G., Dinan, T. G., & Cryan, J. F. (2016) · International Journal of Neuropsychopharmacology · doi:10.1093/ijnp/pyw020 · Cited by 632 · see citing works
De Vadder, F., Grasset, E., Mannerås Holm, L., Karsenty, G., Macpherson, A. J., Olofsson, L. E., & Bäckhed, F. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1720017115 · Cited by 566 · see citing works
The maternal microbiome modulates fetal neurodevelopment in mice
Vuong, H. E., Pronovost, G. N., Williams, D. W., Coley, E. J. L., Siegler, E. L., Qiu, A., Kazantsev, M., Wilson, C. J., Rendon, T., & Hsiao, E. Y. (2020) · Nature · doi:10.1038/s41586-020-2745-3 · Cited by 564 · see citing works
Gut Bacteria and Neurotransmitters
Dicks, L. M. T. (2022) · Microorganisms · doi:10.3390/microorganisms10091838 · Cited by 482 · see citing works
Signalling cognition: The gut microbiota and hypothalamic-pituitary-adrenal axis
Rusch, J. A., Layden, B. T., & Dugas, L. R. (2023) · Frontiers in Endocrinology · doi:10.3389/fendo.2023.1130689 · Cited by 415 · see citing works
Relationship between the gut microbiome and brain function
Mohajeri, M. H., La Fata, G., Steinert, R. E., & Weber, P. (2018) · Nutrition Reviews · doi:10.1093/nutrit/nuy009 · Cited by 376 · see citing works
Heiss, C. N., & Olofsson, L. E. (2019) · Journal of Neuroendocrinology · doi:10.1111/jne.12684 · Cited by 304 · see citing works
Role of the gut-brain axis in energy and glucose metabolism
Wachsmuth, H. R., Weninger, S. N., & Duca, F. A. (2022) · Experimental & Molecular Medicine · doi:10.1038/s12276-021-00677-w · Cited by 269 · see citing works
Microbe-host interactions: influence of the gut microbiota on the enteric nervous system
Hyland, N. P., & Cryan, J. F. (2016) · Developmental Biology · doi:10.1016/j.ydbio.2016.06.027 · Cited by 207 · see citing works
Microbiota-modulated CART <sup>+</sup> enteric neurons autonomously regulate blood glucose
Muller, P. A., Matheis, F., Schneeberger, M., Kerner, Z., Jové, V., & Mucida, D. (2020) · Science · doi:10.1126/science.abd6176 · Cited by 154 · see citing works
Yarandi, S. S., Kulkarni, S., Saha, M., Sylvia, K. E., Sears, C. L., & Pasricha, P. J. (2020) · Gastroenterology · doi:10.1053/j.gastro.2020.03.050 · Cited by 138 · see citing works
Posttraumatic stress disorder: does the gut microbiome hold the key?
Leclercq, S., Forsythe, P., & Bienenstock, J. (2016) · The Canadian Journal of Psychiatry · doi:10.1177/0706743716635535 · Cited by 121 · see citing works
Self-citationVisceral Inflammation and Immune Activation Stress the Brain
Holzer, P., Farzi, A., Hassan, A. M., Zenz, G., Jačan, A., & Reichmann, F. (2017) · Frontiers in Immunology · doi:10.3389/fimmu.2017.01613 · Cited by 84 · see citing works
What’s bugging your teen?—The microbiota and adolescent mental health
McVey Neufeld, K.-A., Luczynski, P., Seira Oriach, C., Dinan, T. G., & Cryan, J. F. (2016) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2016.06.005 · Cited by 56 · see citing works
Self-citationTao, W., Yu, Y., Tan, D., Huang, X., Huang, J., Lin, C., & Yu, R. (2025) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2025.1603442 · Cited by 9 · see citing works
- Authors
- McVey Neufeld, K. A., Perez‐Burgos, A., Mao, Y. K., Bienenstock, J., & Kunze, W. A.
- Affiliations
- McMaster Brain‐Body Institute at St Joseph's Healthcare Hamilton ON Canada
- St. Joseph’s Healthcare Hamilton (CA)
- Venue
- Neurogastroenterology & Motility
- Publisher
- Wiley
- Published
- 2015-03-02
- Volume
- 27
- Issue
- 5
- Pages
- 627-636
- ISSN
- 1350-1925 (ISSN-L)
- 1365-2982
- OpenAlex
- W2092859492
- Cited by
- 142
- References
- 50
- Citations by year
- 2026: 8 · 2025: 15 · 2024: 13 · 2023: 5 · 2022: 18 · 2021: 13 · 2020: 22 · 2019: 6 · 2018: 14 · 2017: 8 · 2016: 18 · 2015: 2
- FWCI
- 14.53
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Neurogastroenterology & Motility (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Natural Sciences and Engineering Research Council of Canada (371955-2009)
- Father Sean O'Sullivan Research Council, St Joseph's Healthcare
- Guglietti Family Foundation
- Topics
- Health Sciences › Medicine › Gastroenterology › Gastrointestinal motility and disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Medicine › Surgery › Congenital gastrointestinal and neural anomalies
- Keywords
- gut microbiota, germ-free mice, calbindin, slow afterhyperpolarization, gut-brain signaling, enteric nervous system, conventionalization, TRAM-34, calcium-binding proteins
- MeSH terms
- Gastrointestinal Microbiome, Action Potentials, Animals, Female, Germ-Free Life, Jejunum, Myenteric Plexus, Neurons, Afferent, Pyrazoles, Specific Pathogen-Free Organisms, Enteric Nervous System, Mice, Calbindins
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review