Integrative analysis of gut microbiota composition, host colonic gene expression and intraluminal metabolites in aging C57BL/6J mice
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spp. This study demonstrates that aging is associated with pronounced changes in gut microbiota composition and colonic gene expression. Furthermore, the strong correlations between specific bacterial genera and host gene expression may imply that orchestrated interactions take place in the vicinity of the colonic wall and potentially mediate colonic health during aging.
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Studies in semi-supercentenarians (105-109 years of age) have found specific taxa such as Akkermansia to be more abundant.
“Studies in semi-supercentenarians (people between 105-109 years of age) have found specific taxa such as Akkermansia to be more abundant”
From The Microbiota-Gut-Brain Axis (2019) · cites this paper as van der Lugt et al., 2018
The Discussion reports that Akkermansia was detected in the faeces of centenarians (people over 100), citing earlier studies. It does not specify ages 105–109 or say Akkermansia was more abundant in that group; this paper's own measurements were in mice. (LLM, conf=0.85)
Experimental — accuracy not yet measuredDistinct gut microbiota changes at the extreme of life might promote healthy aging and longevity.
“suggesting distinct gut microbiota changes at this extreme of life might be promoting healthy aging and longevity”
From The Microbiota-Gut-Brain Axis (2019) · cites this paper as van der Lugt et al., 2018
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Subramanian, A., Tamayo, P., Mootha, V. K., Mukherjee, S., Ebert, B. L., Gillette, M. A., Paulovich, A., Pomeroy, S. L., Golub, T. R., Lander, E. S., et al. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0506580102 · Cited by 53,625 · see citing works
Cytoscape: A software Environment for integrated models of biomolecular interaction networks
Shannon, P., Markiel, A., Ozier, O., Baliga, N. S., Wang, J. T., Ramage, D., Amin, N., Schwikowski, B., & Ideker, T. (2003) · Genome Research · doi:10.1101/gr.1239303 · Cited by 51,888 · see citing works
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., Peplies, J., & Glöckner, F. O. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks1219 · Cited by 33,055 · see citing works
López-Otín, C., Blasco, M. A., Partridge, L., Serrano, M., & Kroemer, G. (2013) · Cell · doi:10.1016/j.cell.2013.05.039 · Cited by 14,982 · see citing works
The basics of epithelial-mesenchymal transition
Kalluri, R., & Weinberg, R. A. (2009) · Journal of Clinical Investigation · doi:10.1172/jci39104 · Cited by 10,196 · see citing works
Molecular mechanisms of epithelial–mesenchymal transition
Lamouille, S., Xu, J., & Derynck, R. (2014) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3758 · Cited by 8,091 · see citing works
Diversity of the Human Intestinal Microbial Flora
Eckburg, P. B., Bik, E. M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S. R., Nelson, K. E., & Relman, D. A. (2005) · Science · doi:10.1126/science.1110591 · Cited by 7,913 · see citing works
Changes of Intestinal Functions in Liver Cirrhosis
Fukui, H., & Wiest, R. (2016) · Inflammatory Intestinal Diseases · doi:10.1159/000444436 · Cited by 6,820 · see citing works
Causal analysis approaches in Ingenuity Pathway Analysis
Krämer, A., Green, J., Pollard, J., & Tugendreich, S. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btt703 · Cited by 5,724 · see citing works
Ecologically meaningful transformations for ordination of species data
Legendre, P., & Gallagher, E. D. (2001) · Oecologia · doi:10.1007/s004420100716 · Cited by 5,556 · see citing works
Gut microbiota in health and disease
Sekirov, I., Russell, S. L., Antunes, L. C. M., & Finlay, B. B. (2010) · Physiological Reviews · doi:10.1152/physrev.00045.2009 · Cited by 4,182 · see citing works
Formation of short chain fatty acids by the gut microbiota and their impact on human metabolism
Morrison, D. J., & Preston, T. (2016) · Gut Microbes · doi:10.1080/19490976.2015.1134082 · Cited by 3,781 · see citing works
The gut microbiota--masters of host development and physiology
Sommer, F., & Bäckhed, F. (2013) · Nature Reviews Microbiology · doi:10.1038/nrmicro2974 · Cited by 3,681 · see citing works
Intestinal epithelial cells: regulators of barrier function and immune homeostasis
Peterson, L. W., & Artis, D. (2014) · Nature reviews. Immunology · doi:10.1038/nri3608 · Cited by 3,191 · see citing works
TGF-β-induced epithelial to mesenchymal transition
Xu, J., Lamouille, S., & Derynck, R. (2009) · Cell Research · doi:10.1038/cr.2009.5 · Cited by 2,804 · see citing works
Louis, P., & Flint, H. J. (2009) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2009.01514.x · Cited by 2,179 · see citing works
Gut microbiome alterations in Alzheimer’s disease
Vogt, N. M., Kerby, R. L., Dill-McFarland, K. A., Harding, S. J., Merluzzi, A. P., Johnson, S. C., Carlsson, C. M., Asthana, S., Zetterberg, H., Blennow, K., et al. (2017) · Scientific Reports · doi:10.1038/s41598-017-13601-y · Cited by 2,137 · see citing works
Canoco Reference Manual and User’s Guide: Software for Ordination (version 5.0)
ter Braak, C. J. F., & Šmilauer, P. (2012) · Cited by 1,898 · see citing works
Regional specialization within the intestinal immune system
Mowat, A. M., & Agace, W. W. (2014) · Nature reviews. Immunology · doi:10.1038/nri3738 · Cited by 1,769 · see citing works
Composition, variability, and temporal stability of the intestinal microbiota of the elderly
Claesson, M. J., Cusack, S., O'Sullivan, O., Greene-Diniz, R., de Weerd, H., Flannery, E., Marchesi, J. R., Falush, D., Dinan, T., Fitzgerald, G., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000097107 · Cited by 1,754 · see citing works
Rivière, A., Selak, M., Lantin, D., Leroy, F., & Vuyst, L. D. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00979 · Cited by 1,746 · see citing works
STEM: a tool for the analysis of short time series gene expression data
Ernst, J., & Bar-Joseph, Z. (2006) · BMC Bioinformatics · doi:10.1186/1471-2105-7-191 · Cited by 1,703 · see citing works
Odamaki, T., Kato, K., Sugahara, H., Hashikura, N., Takahashi, S., Xiao, J.-Z., Abe, F., & Osawa, R. (2016) · BMC Microbiology · doi:10.1186/s12866-016-0708-5 · Cited by 1,521 · see citing works
Through Ageing, and Beyond: Gut Microbiota and Inflammatory Status in Seniors and Centenarians
Biagi, E., Nylund, L., Candela, M., Ostan, R., Bucci, L., Pini, E., Nikkïla, J., Monti, D., Satokari, R., Franceschi, C., et al. (2010) · PLoS ONE · doi:10.1371/journal.pone.0010667 · Cited by 1,483 · see citing works
Fernandes, A. D., Reid, J. N., Macklaim, J. M., McMurrough, T. A., Edgell, D. R., & Gloor, G. B. (2014) · Microbiome · doi:10.1186/2049-2618-2-15 · Cited by 1,329 · see citing works
Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers
Wang, T., Cai, G., Qiu, Y., Fei, N., Zhang, M., Pang, X., Jia, W., Cai, S., & Zhao, L. (2012) · The ISME Journal · doi:10.1038/ismej.2011.109 · Cited by 1,287 · see citing works
Akkermansia muciniphila and its role in regulating host functions
Derrien, M., Belzer, C., & de Vos, W. M. (2017) · Microbial Pathogenesis · doi:10.1016/j.micpath.2016.02.005 · Cited by 1,044 · see citing works
Self-citationGut Microbiota and Extreme Longevity
Biagi, E., Franceschi, C., Rampelli, S., Severgnini, M., Ostan, R., Turroni, S., Consolandi, C., Quercia, S., Scurti, M., Monti, D., et al. (2016) · Current Biology · doi:10.1016/j.cub.2016.04.016 · Cited by 1,025 · see citing works
Franceschi, C., Garagnani, P., Vitale, G., Capri, M., & Salvioli, S. (2017) · Trends in Endocrinology & Metabolism · doi:10.1016/j.tem.2016.09.005 · Cited by 997 · see citing works
Mouse Models in Aging Research
Flurkey, K., MCURRER, J., & HARRISON, D. (2007) · Elsevier eBooks · doi:10.1016/b978-012369454-6/50074-1 · Cited by 904 · see citing works
Correlation between intraluminal oxygen gradient and radial partitioning of intestinal microbiota
Albenberg, L., Esipova, T. V., Judge, C. P., Bittinger, K., Chen, J., Laughlin, A., Grunberg, S., Baldassano, R. N., Lewis, J. D., Li, H., et al. (2014) · Gastroenterology · doi:10.1053/j.gastro.2014.07.020 · Cited by 886 · see citing works
Zoetendal, E. G., von Wright, A., Vilpponen-Salmela, T., Ben-Amor, K., Akkermans, A. D. L., & de Vos, W. M. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.7.3401-3407.2002 · Cited by 868 · see citing works
Schneeberger, M., Everard, A., Gómez-Valadés, A. G., Matamoros, S., Ramírez, S., Delzenne, N. M., Gomis, R., Claret, M., & Cani, P. D. (2015) · Scientific Reports · doi:10.1038/srep16643 · Cited by 798 · see citing works
The Gut Microbiome Modulates Colon Tumorigenesis
Zackular, J. P., Baxter, N. T., Iverson, K. D., Sadler, W. D., Petrosino, J. F., Chen, G., & Schloss, P. D. (2013) · mBio · doi:10.1128/mbio.00692-13 · Cited by 717 · see citing works
Mouse models for human intestinal microbiota research: a critical evaluation
Hugenholtz, F., & de Vos, W. M. (2017) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-017-2693-8 · Cited by 585 · see citing works
Microbial pathways in colonic sulfur metabolism and links with health and disease
Carbonero, F., Benefiel, A. C., Alizadeh-Ghamsari, A. H., & Gaskins, H. R. (2012) · Frontiers in Physiology · doi:10.3389/fphys.2012.00448 · Cited by 544 · see citing works
Gut microbiota: A player in aging and a target for anti-aging intervention
Vaiserman, A. M., Koliada, A. K., & Marotta, F. (2017) · Ageing Research Reviews · doi:10.1016/j.arr.2017.01.001 · Cited by 465 · see citing works
Intestinal bacteria and ageing
Woodmansey, E. J. (2007) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2007.03400.x · Cited by 446 · see citing works
Microbial shifts in the aging mouse gut
Langille, M. G., Meehan, C. J., Koenig, J. E., Dhanani, A. S., Rose, R. A., Howlett, S. E., & Beiko, R. G. (2014) · Microbiome · doi:10.1186/s40168-014-0050-9 · Cited by 437 · see citing works
(Dis)Trust your gut: the gut microbiome in age-related inflammation, health, and disease
Buford, T. W. (2017) · Microbiome · doi:10.1186/s40168-017-0296-0 · Cited by 409 · see citing works
Ageing of the human metaorganism: the microbial counterpart
Biagi, E., Candela, M., Fairweather‐Tait, S. J., Franceschi, C., & Brigidi, P. (2011) · AGE · doi:10.1007/s11357-011-9217-5 · Cited by 365 · see citing works
Microbial Genetic Composition Tunes Host Longevity
Han, B., Sivaramakrishnan, P., Lin, C.-C., Neve, I. A. A., He, J., Tay, L. W. R., Sowa, J. N., Sizovs, A., Du, G., Wang, J., et al. (2017) · Cell · doi:10.1016/j.cell.2017.05.036 · Cited by 353 · see citing works
Visualising associations between paired ‘omics’ data sets
González, I., Cao, K. L., Davis, M. J., & Dejean, S. (2012) · BioData Mining · doi:10.1186/1756-0381-5-19 · Cited by 316 · see citing works
Morotomi, M., Nagai, F., & Watanabe, Y. (2012) · International Journal of Systematic and Evolutionary Microbiology · doi:10.1099/ijs.0.026989-0 · Cited by 297 · see citing works
An Expanded Genomic Representation of the Phylum Cyanobacteria
Soo, R. M., Skennerton, C. T., Sekiguchi, Y., Imelfort, M., Paech, S. J., Dennis, P. G., Steen, J. A., Parks, D. H., Tyson, G. W., & Hugenholtz, P. (2014) · Genome Biology and Evolution · doi:10.1093/gbe/evu073 · Cited by 290 · see citing works
Lepage, P., Seksik, P., Sutren, M., de la Cochetière, M.-F., Jian, R., Marteau, P., & Doré, J. (2005) · Inflammatory Bowel Diseases · doi:10.1097/01.mib.0000159662.62651.06 · Cited by 270 · see citing works
Mira‐Pascual, L., Cabrera‐Rubio, R., Ocon, S. M., Costales, P., Parra, A., Suárez, A., Morís, F., Rodrigo, L., Mira, Á., & Collado, M. C. (2014) · Journal of Gastroenterology · doi:10.1007/s00535-014-0963-x · Cited by 260 · see citing works
Emerging roles of lactic acid bacteria in protection against colorectal cancer
Zhong, L. (2014) · World Journal of Gastroenterology · doi:10.3748/wjg.v20.i24.7878 · Cited by 257 · see citing works
Revisiting Metchnikoff: Age-related alterations in microbiota-gut-brain axis in the mouse
Scott, K. A., Ida, M., Peterson, V. L., Prenderville, J. A., Moloney, G. M., Izumo, T., Murphy, K., Murphy, A., Ross, R. P., Stanton, C., et al. (2017) · Brain, Behavior, and Immunity · doi:10.1016/j.bbi.2017.02.004 · Cited by 202 · see citing works
Human gut microbiota and healthy aging: Recent developments and future prospective
Kumar, M., Babaei, P., Ji, B., & Nielsen, J. (2016) · Nutrition and Healthy Aging · doi:10.3233/nha-150002 · Cited by 201 · see citing works
Intestinal microbiota in metabolic diseases
Clavel, T., Desmarchelier, C., Haller, D., Gérard, P., Rohn, S., Lepage, P., & Daniel, H. (2014) · Gut Microbes · doi:10.4161/gmic.29331 · Cited by 195 · see citing works
(2015) · PubMed · Cited by 152 · see citing works
Mouse models of ageing and their relevance to disease
Kõks, S., Dogan, S., Tuna, B. G., González-Navarro, H., Potter, P., & Vandenbroucke, R. E. (2016) · Mechanisms of Ageing and Development · doi:10.1016/j.mad.2016.10.001 · Cited by 125 · see citing works
Aging and serum MCP-1 are associated with gut microbiome composition in a murine model
Conley, M. N., Wong, C. P., Duyck, K. M., Hord, N. G., Ho, E., & Sharpton, T. J. (2016) · PeerJ · doi:10.7717/peerj.1854 · Cited by 108 · see citing works
Hippe, B., Zwielehner, J., Liszt, K. I., Laßl, C., Unger, F. M., & Haslberger, A. G. (2010) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2010.02197.x · Cited by 99 · see citing works
Microbes-induced EMT at the crossroad of inflammation and cancer
Hofman, P. M., & Vouret‐Craviari, V. (2012) · Gut Microbes · doi:10.4161/gmic.20288 · Cited by 95 · see citing works
Rusli, F., Deelen, J., Andriyani, E., Boekschoten, M. V., Lute, C., van den Akker, E. B., Müller, M. M., Beekman, M., & Steegenga, W. T. (2016) · Scientific Reports · doi:10.1038/srep30484 · Cited by 93 · see citing works
Self-citationBacterial translocation markers in liver cirrhosis
Alexopoulou, A. A. (2017) · Annals of Gastroenterology · doi:10.20524/aog.2017.0178 · Cited by 87 · see citing works
Earley, H., Lennon, G., Balfe, Á., Kilcoyne, M., Clyne, M., Joshi, L., Carrington, S. D., Martin, S., Coffey, J. C., Winter, D. C., et al. (2015) · PLoS ONE · doi:10.1371/journal.pone.0135280 · Cited by 70 · see citing works
Steegenga, W. T., de Wit, N. J. W., Boekschoten, M. V., Ijssennagger, N., Lute, C., Keshtkar, S., Bromhaar, M. M. G., Kampman, E., de Groot, C. P. G. M., & Müller, M. M. (2012) · BMC Medical Genomics · doi:10.1186/1755-8794-5-38 · Cited by 61 · see citing works
Self-citationResident mesenchymal cells and fibrosis
Hutchison, N., Fligny, C., & Duffield, J. S. (2013) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/j.bbadis.2012.11.015 · Cited by 51 · see citing works
Lifelong calorie restriction affects indicators of colonic health in aging C57Bl/6J mice
Kok, D. E. G., Rusli, F., van der Lugt, B., Lute, C., Laghi, L., Salvioli, S., Picone, G., Franceschi, C., Smidt, H., Vervoort, J. J. M., et al. (2018) · The Journal of Nutritional Biochemistry · doi:10.1016/j.jnutbio.2018.01.001 · Cited by 32 · see citing works
Self-citationRusli, F., Boekschoten, M. V., Zubia, A. A., Lute, C., Müller, M. M., & Steegenga, W. T. (2014) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.201400621 · Cited by 20 · see citing works
Self-citationRusli, F., Lute, C., Boekschoten, M. V., van Dijk, M., van Norren, K., Menke, A. L., Müller, M. M., & Steegenga, W. T. (2016) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.201600677 · Cited by 19 · see citing works
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Cryan, J. F., O'Riordan, K. J., Cowan, C. S. M., Sandhu, K. V., Bastiaanssen, T. F. S., Boehme, M., Codagnone, M. G., Cussotto, S., Fulling, C., Golubeva, A. V., et al. (2019) · Physiological Reviews · doi:10.1152/physrev.00018.2018 · Cited by 5,286 · see citing works
Ahmadi, S., Wang, S., Nagpal, R., Wang, B., Jain, S., Razazan, A. P., Mishra, S. P., Zhu, X., Wang, Z., Kavanagh, K., et al. (2020) · JCI Insight · doi:10.1172/jci.insight.132055 · Cited by 261 · see citing works
Extracellular Vesicles from Child Gut Microbiota Enter into Bone to Preserve Bone Mass and Strength
Liu, J., Chen, C., Liu, Z., Luo, Z., Rao, S., Jin, L., Wan, T., Yue, T., Tan, Y., Yin, H., et al. (2021) · Advanced Science · doi:10.1002/advs.202004831 · Cited by 256 · see citing works
van der Lugt, B., van Beek, A. A., Aalvink, S., Meijer, B., Sovran, B., Vermeij, W. P., Brandt, R. M. C., de Vos, W. M., Savelkoul, H. F. J., Steegenga, W. T., et al. (2019) · Immunity & Ageing · doi:10.1186/s12979-019-0145-z · Cited by 217 · see citing works
Self-citationMa, J., Hong, Y., Zheng, N., Xie, G., Lyu, Y., Gu, Y., Xi, C., Chen, L., Wu, G., Li, Y., et al. (2020) · Gut Microbes · doi:10.1080/19490976.2020.1763770 · Cited by 171 · see citing works
Boehme, M., van de Wouw, M., Bastiaanssen, T. F. S., Olavarría-Ramírez, L., Lyons, K., Fouhy, F., Golubeva, A. V., Moloney, G. M., Minuto, C., Sandhu, K. V., et al. (2020) · Molecular Psychiatry · doi:10.1038/s41380-019-0425-1 · Cited by 128 · see citing works
Liu, X., Liu, D., Lin, G., Wu, Y., Gao, L., Ai, C., Huang, Y., Wang, M.-F., El-Seedi, H. R., Chen, X., et al. (2019) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2019.07.195 · Cited by 125 · see citing works
Luo, Y., Lan, C., Li, H., Ouyang, Q., Kong, F., Wu, A., Ren, Z., Tian, G., Cai, J., Yu, B., et al. (2022) · npj Biofilms and Microbiomes · doi:10.1038/s41522-022-00338-4 · Cited by 127 · see citing works
Gut Microbiota Interaction with the Central Nervous System throughout Life
Ojeda, J., Ávila, A., & Vidal, P. M. (2021) · Journal of Clinical Medicine · doi:10.3390/jcm10061299 · Cited by 107 · see citing works
Zhu, X., Shen, J., Feng, S., Huang, C., Wang, H., Huo, F., & Liu, H. (2023) · Microbiome · doi:10.1186/s40168-023-01567-1 · Cited by 104 · see citing works
The intestinal microbiome and its relevance for functionality in older persons
Ticinesi, A., Tana, C., & Nouvenne, A. (2019) · Current Opinion in Clinical Nutrition & Metabolic Care · doi:10.1097/mco.0000000000000521 · Cited by 80 · see citing works
Shenghua, P., Zhu, Z., Shuyu, T., Zhan, H., Xianglu, R., & Jiao, G. (2019) · Biomedicine & Pharmacotherapy · doi:10.1016/j.biopha.2019.109421 · Cited by 74 · see citing works
O’Toole, P. W., & Shiels, P. G. (2020) · Journal of Internal Medicine · doi:10.1111/joim.13021 · Cited by 61 · see citing works
Exploring the microbiota-gut-brain axis: impact on brain structure and function
Yassin, L. K., Nakhal, M. M., Alderei, A., Almehairbi, A., Mydeen, A. B., Akour, A. A., & Hamad, M. I. K. (2025) · Frontiers in Neuroanatomy · doi:10.3389/fnana.2025.1504065 · Cited by 60 · see citing works
The gut microbiota is an emerging target for improving brain health during ageing
Boehme, M., Guzzetta, K. E., Wasén, C., & Cox, L. M. (2022) · Gut Microbiome · doi:10.1017/gmb.2022.11 · Cited by 56 · see citing works
Lappan, R. J., Classon, C., Kumar, S. B., Singh, O. P., de Almeida, R. V., Chakravarty, J., Kumari, P., Kansal, S., Sundar, S., & Blackwell, J. M. (2019) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0007444 · Cited by 52 · see citing works
Influence of Porphyromonas gingivalis in gut microbiota of streptozotocin‐induced diabetic mice
Ohtsu, A., Takeuchi, Y., Katagiri, S., Suda, W., Maekawa, S., Shiba, T., Komazaki, R., Udagawa, S., Sasaki, N., Hattori, M., et al. (2019) · Oral Diseases · doi:10.1111/odi.13044 · Cited by 51 · see citing works
Monocyte mobilisation, microbiota & mental illness
van de Wouw, M., Boehme, M., Dinan, T. G., & Cryan, J. F. (2019) · Brain Behavior and Immunity · doi:10.1016/j.bbi.2019.07.019 · Cited by 40 · see citing works
Cerro, E. D., Hernansanz, M. L., Félix, J., Salazar, N., Gueimonde, M., & la Fuente, M. D. (2021) · Biogerontology · doi:10.1007/s10522-021-09943-w · Cited by 41 · see citing works
Liu, T., Song, X., An, Y., Wu, X., Zhang, W., Li, J., Sun, Y., Jin, G., Liu, X., Guo, Z., et al. (2021) · Oxidative Medicine and Cellular Longevity · doi:10.1155/2021/3328505 · Cited by 42 · see citing works
Zhu, L., Chen, J., Pi, X., Li, J., Liu, W., Ding, Q., Wang, X., & Jia, W. (2021) · BMC Microbiology · doi:10.1186/s12866-021-02103-7 · Cited by 40 · see citing works
Association between Dysbiosis in the Gut Microbiota of Primary Osteoporosis Patients and Bone Loss
Waldbaum, J., Xhumari, J., Akinsuyi, O., Arjmandi, B. H., Anton, S. D., & Roesch, L. F. W. (2023) · Aging and Disease · doi:10.14336/ad.2023.0425 · Cited by 40 · see citing works
Urinary metabolite signature in bipolar disorder patients during depressive episode
Chen, J., Xie, J., Zeng, L., Zhou, C., Zheng, P., & Xie, P. (2019) · Aging · doi:10.18632/aging.101805 · Cited by 40 · see citing works
Absence of gut microbiota affects lipid metabolism in the prefrontal cortex of mice
Chen, J., Xie, J., Zeng, B., Li, W., Bai, S., Zhou, C., Chen, W., Wei, H., & Xie, P. (2019) · Neurological Research · doi:10.1080/01616412.2019.1675021 · Cited by 38 · see citing works
Xie, H., Hua, Z., Guo, M., Lin, S., Zhou, Y., Weng, Z., Wu, L., Chen, Z., Xu, Z., & Li, W. (2022) · Pharmaceutical Biology · doi:10.1080/13880209.2022.2056208 · Cited by 40 · see citing works
You, X., Dadwal, U. C., Lenburg, M. E., Kacena, M. A., & Charles, J. F. (2022) · mSystems · doi:10.1128/msystems.01248-21 · Cited by 36 · see citing works
Impact of the Age of Cecal Material Transfer Donors on Alzheimer’s Disease Pathology in 5xFAD Mice
Valeri, F., Guilherme, M. D. S., He, F., Stoye, N. M., Schwiertz, A., & Endres, K. (2021) · Microorganisms · doi:10.3390/microorganisms9122548 · Cited by 32 · see citing works
Gut Microbiota Predicts Healthy Late-Life Aging in Male Mice
Ke, S., Mitchell, S. J., MacArthur, M. R., Kane, A. E., Sinclair, D. A., Venable, E. M., Chadaideh, K. S., Carmody, R. N., Grodstein, F., Mitchell, J. R., et al. (2021) · Nutrients · doi:10.3390/nu13093290 · Cited by 27 · see citing works
The endocannabinoid system: a bridge between alzheimer’s disease and gut microbiota
Bisogno, T., Lauritano, A., & Piscitelli, F. (2021) · Life · doi:10.3390/life11090934 · Cited by 16 · see citing works
Monzó, C., Gkioni, L., Beyer, A., Valenzano, D. R., Grönke, S., & Partridge, L. (2023) · Cell Reports · doi:10.1016/j.celrep.2023.112722 · Cited by 16 · see citing works
Combining p-values from various statistical methods for microbiome data
Ham, H., & Park, T. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.990870 · Cited by 14 · see citing works
Ederer, M.-L., Günther, M., Best, L., Lindner, J., Kaleta, C., Witte, O. W., Simon, R., & Frahm, C. (2022) · Cells · doi:10.3390/cells11030566 · Cited by 14 · see citing works
The microbiota-gut-brain axis in Huntington's disease
Love, C. J., Masson, B. A., Gubert, C., & Hannan, A. J. (2022) · International review of neurobiology · doi:10.1016/bs.irn.2022.06.005 · Cited by 14 · see citing works
Mutation accumulation and horizontal gene transfer inEscherichia colicolonizing the gut of old mice
Barreto, H. C., Frazão, N., Sousa, A., Konrad, A., & Gordo, I. (2020) · Communicative & Integrative Biology · doi:10.1080/19420889.2020.1783059 · Cited by 12 · see citing works
Teulière, J., Bernard, C., & Bapteste, E. P. (2021) · Ageing Research Reviews · doi:10.1016/j.arr.2021.101375 · Cited by 12 · see citing works
Lipocalin 2 Deficiency Restrains Aging-Related Reshaping of Gut Microbiota Structure and Metabolism
Qiu, X., Chen, C., & Chen, X. (2021) · Biomolecules · doi:10.3390/biom11091286 · Cited by 12 · see citing works
Probiotic Lactobacilli Ameliorate Antibiotic-Induced Cognitive and Behavioral Impairments in Mice
Рашидовна, Я. Д., Novoselova, V., Alexandrova, A., Arslanova, A., Yakovleva, O. V., Shaidullov, I. F., Nikolaev, Y. A., El-Registan, G. I., Кудрин, В. С., & Ситдикова, Г. Ф. (2024) · Microbiology Research · doi:10.3390/microbiolres15030099 · Cited by 11 · see citing works
Forsyth, C. B., Shaikh, M. W., Engen, P. A., Preuss, F., Naqib, A. D., Palmen, B. A., Green, S. J., Zhang, L., Bogin, Z. R., Lawrence, K. M., et al. (2024) · Frontiers in Aging · doi:10.3389/fragi.2024.1352299 · Cited by 11 · see citing works
Increasing spatial working memory in mice with Akkermansia muciniphila
Ahn, J., Kim, S., Han, E.-J., Hong, S., & Chung, H. (2025) · Communications Biology · doi:10.1038/s42003-025-07975-3 · Cited by 9 · see citing works
Gabbianelli, R. (2018) · Lifestyle Genomics · doi:10.1159/000490751 · Cited by 9 · see citing works
The microbiome is associated with obesity-related metabolome signature in the process of aging
Binyamin, D., Turjeman, S., Asulin, N., Schweitzer, R., & Koren, O. (2025) · npj Biofilms and Microbiomes · doi:10.1038/s41522-025-00811-w · Cited by 10 · see citing works
Effect of Senecio scandens ethanol extract on gut microbiota composition in mice
Yao, G., Zhang, H., Luo, G., Wang, Z., Zhao, H., Zhang, J., Dong, Y., Gao, Y., & Wu, S. (2021) · Archives of Microbiology · doi:10.1007/s00203-020-02144-y · Cited by 8 · see citing works
Heterochronic Fecal Microbiota Transfer Reverses Hallmarks of the Aging Murine Gut, Eye and BrainPreprint
Parker, A., Romano, S., Ansorge, R., Aboelnoer, A., Gall, G. L., Savva, G. M., Telatin, A., Jones, E. J., Baker, D., Rudder, S. J., et al. (2021) · SSRN Electronic Journal · doi:10.2139/ssrn.3811833 · Cited by 8 · see citing works
Huang, Y., Lu, H., Zhang, L., Olivier, A. K., Wu, T., Hsu, C., LeGrand, C., Zeng, H., Curran, S., Wang, Q., et al. (2025) · Aging Cell · doi:10.1111/acel.70130 · Cited by 7 · see citing works
Alterations of the gut microbiome and metabolic profile in CVB3-induced mice acute viral myocarditis
Kong, Q., Chen, L., Zeng, X., Lu, F., Huang, Y., & Wu, W. (2023) · BMC Microbiology · doi:10.1186/s12866-023-02863-4 · Cited by 7 · see citing works
Clostridium Difficile Infection: An Immunological Conundrum
Arredondo‐Hernández, R., Estrada, P. O., López‐Vidal, Y., & de León-Rosales, S. P. (2018) · Archives of Medical Research · doi:10.1016/j.arcmed.2018.11.002 · Cited by 6 · see citing works
Cheng, X., Cheng, B., Jin, R., Zheng, H., Zhou, J., & Shan, S. (2024) · Archives of Dermatological Research · doi:10.1007/s00403-024-03116-8 · Cited by 5 · see citing works
Deficiency of Gut-Enriched Lipase H Promotes Gut Aging and Reduces Lifespan in Drosophila
Sun, Y., Ma, H., Zhou, X., Huang, L., Yu, P. F., Qi, Y., Wei, G., & Ni, T. (2024) · Phenomics · doi:10.1007/s43657-024-00187-5 · Cited by 6 · see citing works
Peng, X., Liu, H., Wang, J., Jiang, J., Chen, H., Tao, J., & Wu, B. (2023) · Mechanisms of Ageing and Development · doi:10.1016/j.mad.2023.111796 · Cited by 4 · see citing works
Bi, Y., Li, T., Pan, H., Guo, M., Chen, L., Qi, Q., Zhang, M., ZHANG, L., Yu, L., Wan, X., et al. (2020) · Biocell · doi:10.32604/biocell.2020.011208 · Cited by 4 · see citing works
LIAO, Y., Li, X., Li, Q., Wang, Y., TAN, X., & GONG, T. (2024) · Biocell · doi:10.32604/biocell.2024.050324 · Cited by 3 · see citing works
IL-1β knockout increases the intestinal abundancy of Akkermansia muciniphila
Bechberger, M., Eigenbrod, T., Boutin, S., Heeg, K. M., & Bode, K. A. (2023) · Beneficial Microbes · doi:10.1163/18762891-20220042 · Cited by 3 · see citing works
Nakanishi, Y., Nozu, R., Ueno, M., Hioki, K., Ishii, C., Murakami, S., Suzuki, K. M., Ka, Y., Ogura, T., Ito, A., et al. (2020) · Research Square · doi:10.21203/rs.3.rs-119480/v1 · Cited by 2 · see citing works
Korcari, A., Tauc, H. M., Duggan, J., Wehbe, F., Darmanis, S., Modrusan, Z. D., Yun, J., Pappu, R., Garfield, D., Jasper, H., et al. (2026) · Aging Cell · doi:10.1111/acel.70495 · Cited by 1 · see citing works
Akkermansia muciniphila and Its Bioactive Derivatives: Emerging Regulators of Healthy Aging
Zhang, T., Niu, J., Hu, X., Hu, Z., Gao, Y., Liu, J., Chen, N., & Hu, Y. (2026) · Aging Cell · doi:10.1111/acel.70702 · Cited by 1 · see citing works
Liao, J., Shen, X., Long, W., Yu, S., Wang, G., Du, C., & Liang, Z. (2024) · Indian Journal of Animal Research · doi:10.18805/ijar.bf-1752 · Cited by 1 · see citing works
Defining the role of individual gut commensal microbes and host-microbe interactions
Ju, T. (2019) · ERA: Education and Research Archive (University of Alberta) · doi:10.7939/r3-fhw9-mj96 · Cited by 1 · see citing works
Absence of gut microbiota affects lipid metabolism in the prefrontal cortex of micePreprint
Chen, J., Xie, J., Zeng, B., Li, W., Bai, S., Zhou, C., Chen, W., Wei, H., & Xie, P. (2021) · Research Square · doi:10.21203/rs.3.rs-96615/v2 · Cited by 1 · see citing works
"Smurf Mice": revolutionising our understanding of age-related and end-of-life animal physiologyPreprint
Cansell, C., Goepp, V., Bain, F., Todd, N., Douard, V., Monnoye, M., Zane, F., Sanchez, C., Pietrancosta, N., Rovère, C., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.06.14.659669 · Cited by 1 · see citing works
Wang, S. S. (2018) · Annals of Advanced Biomedical Sciences · doi:10.23880/aabsc-16000106
Absence of gut microbiota affects lipid metabolism in the prefrontal cortex of micePreprint
Chen, J., Xie, J., Zeng, B., Li, W., Bai, S., Zhou, C., Chen, W., Wei, H., & Xie, P. (2021) · Research Square · doi:10.21203/rs.3.rs-96615/v1
Nakanishi, Y., Nozu, R., Ueno, M., Hioki, K., Ishii, C., Murakami, S., Suzuki, K. M., Ka, Y., Ogura, T., Ito, A., et al. (2023) · Research Square · doi:10.21203/rs.3.rs-3464296/v1
Kong, Q., Chen, L., Zeng, X., Lu, F., Huang, Y., & Wu, W.-F. (2023) · Figshare · doi:10.6084/m9.figshare.22949319
Lima, R. S., Santos, R. S., Chaves‐Filho, A. B., Trzan, I. F. L., Inague, A., de Faria, R. L., Dantas, L. S., Pinto, I. F. D., de Medeiros, M. H. G., Steiner, A. A., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.05.05.650333
Kong, Q., Chen, L., Zeng, X., Lu, F., Huang, Y., & Wu, W. (2023) · Figshare · doi:10.6084/m9.figshare.22949322
Zhu, X., Shen, J., Feng, S., Huang, C., Wang, H., Huo, F., & Liu, H. (2023) · Figshare · doi:10.6084/m9.figshare.23265023
Chen, J., Pi, X., Liu, W., Ding, Q., Wang, X., Jia, W., & Zhu, L. (2021) · Figshare · doi:10.6084/m9.figshare.14037361
Chen, J., Pi, X., Liu, W., Ding, Q., Wang, X., Jia, W., & Zhu, L. (2021) · Figshare · doi:10.6084/m9.figshare.14037358
Liao, Y., Yuan, X., Qin, A., Qi, Y., Shan, C., & Ma, J. (2026) · Diabetes Obesity and Metabolism · doi:10.1111/dom.70972
Microbiome‐blood–brain barrier interactions in aging — mechanisms and therapeutic potential
Cuervo-Zanatta, D., Balasubramanian, H. B., Pasokh, A., & Zille, M. (2026) · FEBS Letters · doi:10.1002/1873-3468.70412
Baik, J., Gwon, H., Kim, J.-Y., Shim, J.-J., & Lee, J.-H. (2026) · Journal of Microbiology and Biotechnology · doi:10.4014/jmb.2609.09057
- Authors
- van der Lugt, B., Rusli, F., Lute, C., Lamprakis, A., Salazar, E., Boekschoten, M. V., Hooiveld, G. J., Müller, M., Vervoort, J., Kersten, S., Belzer, C., Kok, D. E. G., & Steegenga, W. T.
- Affiliations
- Division of Human Nutrition, Wageningen University and Research, 6708 WE, Wageningen, The Netherlands
- Wageningen University & Research (NL)
- University of East Anglia (GB)
- ORCID
- Venue
- Aging
- Publisher
- Impact Journals, LLC
- Published
- 2018-05-16
- Volume
- 10
- Issue
- 5
- Pages
- 930-950
- ISSN
- 1945-4589 (ISSN-L)
- PMC
- PMC5990381
- OpenAlex
- W2804002517
- Cited by
- 72
- References
- 64
- Citations by year
- 2026: 5 · 2025: 6 · 2024: 6 · 2023: 10 · 2022: 7 · 2021: 17 · 2020: 6 · 2019: 11 · 2018: 4
- FWCI
- 3.38
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- cc-by
- Locations
- Aging (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- UEA Digital Repository (University of East Anglia) (acceptedVersion)
- Socio-Environmental Systems Modeling (acceptedVersion, cc-by)
- Socio-Environmental Systems Modeling (acceptedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion, cc-by)
- Data Archiving and Networked Services (DANS) (submittedVersion, other-oa)
- Funders
- European Commission (FP7/2007-2011, FP7/2007, 259679)
- Nederlandse Organisatie voor Wetenschappelijk Onderzoek (022.006.009)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Animal Nutrition and Physiology
- Health Sciences › Dentistry › Periodontics › Oral microbiology and periodontitis research
- Keywords
- gut microbiota, colonic gene expression, host-microbe interactions, C57BL/6J mice, bacterial genera, colonic health
- MeSH terms
- Gastrointestinal Microbiome, Aging, Animals, Colon, Intestinal Mucosa, Mice, Inbred C57BL, Gene Expression, Mice, Transcriptome
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