PCR and omics based techniques to study the diversity, ecology and biology of anaerobic fungi: insights, challenges and opportunities
Open accessAbstract
Anaerobic fungi (phylum Neocallimastigomycota) are common inhabitants of the digestive tract of mammalian herbivores, and in the rumen, can account for up to 20% of the microbial biomass. Anaerobic fungi play a primary role in the degradation of lignocellulosic plant material. They also have a syntrophic interaction with methanogenic archaea, which increases their fiber degradation activity. To date, nine anaerobic fungal genera have been described, with further novel taxonomic groupings known to exist based on culture-independent molecular surveys. However, the true extent of their diversity may be even more extensively underestimated as anaerobic fungi continue being discovered in yet unexplored gut and non-gut environments. Additionally many studies are now known to have used primers that provide incomplete coverage of the Neocallimastigomycota. For ecological studies the internal transcribed spacer 1 region (ITS1) has been the taxonomic marker of choice, but due to various limitations the large subunit rRNA (LSU) is now being increasingly used. How the continued expansion of our knowledge regarding anaerobic fungal diversity will impact on our understanding of their biology and ecological role remains unclear; particularly as it is becoming apparent that anaerobic fungi display niche differentiation. As a consequence, there is a need to move beyond the broad generalization of anaerobic fungi as fiber-degraders, and explore the fundamental differences that underpin their ability to exist in distinct ecological niches. Application of genomics, transcriptomics, proteomics and metabolomics to their study in pure/mixed cultures and environmental samples will be invaluable in this process. To date the genomes and transcriptomes of several characterized anaerobic fungal isolates have been successfully generated. In contrast, the application of proteomics and metabolomics to anaerobic fungal analysis is still in its infancy. A central problem for all analyses, however, is the limited functional annotation of anaerobic fungal sequence data. There is therefore an urgent need to expand information held within publicly available reference databases. Once this challenge is overcome, along with improved sample collection and extraction, the application of these techniques will be key in furthering our understanding of the ecological role and impact of anaerobic fungi in the wide range of environments they inhabit.
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Rumen bacteria play a dominant role in fiber digestion, although anaerobic fungi and protozoa contribute to lignocellulose breakdown by attacking lignocellulosic material differently and discharging different enzyme complexes.
“Rumen bacteria play a dominant role in fiber digestion, although anaerobic fungi and protozoa have been reported to contribute to lignocellulose breakdown by attacking lignocellulosic material differently (60, 64) and discharging different enzyme complexes (101).”
From Phytogenic Additives Can Modulate Rumen Microbiome to Mediate Fermentation Kinetics and Methanogenesis Through Exploiting Diet–Microbe Interaction (2020) · cites this paper as [60]
The Proteomics section reports secreted plant-cell-wall-degrading enzymes in anaerobic fungi, and the Genomics section describes fungal cellulosomes as multi-enzyme complexes that accelerate lignocellulose degradation (pages unavailable). These passages support the enzyme-complex point for fungi, but do not establish that protozoa discharge different enzyme complexes. Citation (101) is attached to the enzyme-complex phrase, not the preceding claim about bacteria’s dominant role. (LLM, conf=0.82)
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Cites
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
White, T. J., Bruns, T., Lee, S., & Taylor, J. (1990) · PCR Protocols · doi:10.1016/b978-0-12-372180-8.50042-1 · Cited by 36,648 · see citing works
QIIME allows analysis of high-throughput community sequencing data
Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Peña, A. G., Goodrich, J. K., Gordon, J. I., et al. (2010) · Nature Methods · doi:10.1038/nmeth.f.303 · Cited by 34,887 · see citing works
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D. H., Robinson, C. J., et al. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.01541-09 · Cited by 20,966 · see citing works
Schoch, C. L., Seifert, K. A., Huhndorf, S. M., Robert, V., Spouge, J. L., Lévesque, C. A., Chen, W., Bolchacova, E., Voigt, K., Crous, P. W., et al. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1117018109 · Cited by 5,176 · see citing works
Self-citationBenson, D. A., Cavanaugh, M., Clark, K., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J., & Sayers, E. W. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks1195 · Cited by 3,261 · see citing works
A higher-level phylogenetic classification of the Fungi
Hibbett, D. S., Binder, M., Bischoff, J. F., Blackwell, M., Cannon, P. F., Eriksson, O. E., Huhndorf, S. M., James, T. Y., Kirk, P. M., Lücking, R., et al. (2007) · Mycological Research · doi:10.1016/j.mycres.2007.03.004 · Cited by 2,388 · see citing works
Self-citationThe UNITE database for molecular identification of fungi – recent updates and future perspectives
Abarenkov, K., Nilsson, R. H., Larsson, K., Alexander, I. J., Eberhardt, U., Erland, S., Høiland, K., Kjøller, R., Larsson, E., Pennanen, T., et al. (2010) · New Phytologist · doi:10.1111/j.1469-8137.2009.03160.x · Cited by 1,911 · see citing works
Current two‐dimensional electrophoresis technology for proteomics
Görg, A., Weiss, W., & Dunn, M. J. (2004) · PROTEOMICS · doi:10.1002/pmic.200401031 · Cited by 1,823 · see citing works
Reconstructing the early evolution of Fungi using a six-gene phylogeny
James, T. Y., Kauff, F., Schoch, C. L., Matheny, P. B., Hofstetter, V., Cox, C. J., Celio, G. J., Gueidan, C., Fraker, E., Miądlikowska, J., et al. (2006) · Nature · doi:10.1038/nature05110 · Cited by 1,807 · see citing works
Self-citationFungal secondary metabolism — from biochemistry to genomics
Keller, N. P., Turner, G., & Bennett, J. W. (2005) · Nature Reviews Microbiology · doi:10.1038/nrmicro1286 · Cited by 1,736 · see citing works
Henderson, G., Cox, F., Ganesh, S., Jonker, A., Young, W., Collaborators, G. R. C., Abecia, L., Angarita, E., Aravena, P., Nora Arenas, G., et al. (2015) · Scientific Reports · doi:10.1038/srep14567 · Cited by 1,682 · see citing works
Differential expression in RNA-seq: A matter of depth
Tarazona, S., García-Alcalde, F., Dopazo, J., Ferrer, A., & Conesa, A. (2011) · Genome Research · doi:10.1101/gr.124321.111 · Cited by 1,632 · see citing works
MycoCosm portal: gearing up for 1000 fungal genomes
Grigoriev, I. V., Nikitin, R., Haridas, S., Kuo, A., Ohm, R., Otillar, R., Riley, R., Salamov, A., Zhao, X., Korzeniewski, F., et al. (2014) · Nucleic Acids Research · doi:10.1093/nar/gkt1183 · Cited by 1,498 · see citing works
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
Hess, M., Sczyrba, A., Egan, R., Kim, T.-W., Chokhawala, H., Schroth, G., Luo, S., Clark, D. S., Chen, F., Zhang, T., et al. (2011) · Science · doi:10.1126/science.1200387 · Cited by 1,319 · see citing works
Kõljalg, U., Larsson, K., Abarenkov, K., Nilsson, R. H., Alexander, I. J., Eberhardt, U., Erland, S., Høiland, K., Kjøller, R., Larsson, E., et al. (2005) · New Phytologist · doi:10.1111/j.1469-8137.2005.01376.x · Cited by 1,162 · see citing works
Schurch, N. J., Schofield, P., Gierliński, M., Cole, C., Sherstnev, A., Singh, V., Wrobel, N., Gharbi, K., Simpson, G. G., Owen-Hughes, T., et al. (2016) · RNA · doi:10.1261/rna.053959.115 · Cited by 966 · see citing works
Characterizing and measuring bias in sequence data
Ross, M. G., Russ, C., Costello, M., Hollinger, A., Lennon, N. J., Hegarty, R., Nusbaum, C., & Jaffe, D. B. (2013) · Genome Biology · doi:10.1186/gb-2013-14-5-r51 · Cited by 909 · see citing works
Fell, J. W., Boekhout, T., Fonseca, Á., Scorzetti, G., & Statzell-Tallman, A. (2000) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/00207713-50-3-1351 · Cited by 902 · see citing works
Aebersold, R. H., Leavitt, J. C., Saavedra, R., Hood, L., & Kent, S. B. H. (1987) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.84.20.6970 · Cited by 808 · see citing works
Brulc, J. M., Antonopoulos, D. A., Miller, M. E. B., Wilson, M. K., Yannarell, A. C., Dinsdale, E. A., Edwards, R. E., Frank, E. D., Emerson, J., Wacklin, P., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0806191105 · Cited by 757 · see citing works
Denman, S. E., & McSweeney, C. S. (2006) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2006.00190.x · Cited by 753 · see citing works
Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa
Ariyawansa, H. A., Hyde, K. D., Jayasiri, S. C., Buyck, B., Chethana, K. W. T., Dai, D. Q., Dai, Y. C., Daranagama, D. A., Jayawardena, R. S., Lücking, R., et al. (2015) · Fungal Diversity · doi:10.1007/s13225-015-0346-5 · Cited by 751 · see citing works
Self-citationThe role of ciliate protozoa in the rumen
Newbold, C. J., de la Fuente, G., Belanche, A., Ramos-Morales, E., & McEwan, N. R. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.01313 · Cited by 637 · see citing works
Mass spectrometry in metabolome analysis
Villas-Bôas, S. G., Mas, S., Åkesson, M., Smedsgaard, J., & Nielsen, J. (2004) · Mass Spectrometry Reviews · doi:10.1002/mas.20032 · Cited by 618 · see citing works
ITS2 is a double-edged tool for eukaryote evolutionary comparisons
Coleman, A. W. (2003) · Trends in Genetics · doi:10.1016/s0168-9525(03)00118-5 · Cited by 541 · see citing works
Studies on the Rumen Flagellate Neocallimastix frontalis
Orpin, C. G. (1975) · Journal of General Microbiology · doi:10.1099/00221287-91-2-249 · Cited by 417 · see citing works
Metabolomics technology and bioinformatics
Shulaev, V. (2006) · Briefings in Bioinformatics · doi:10.1093/bib/bbl012 · Cited by 409 · see citing works
4SALE – A tool for synchronous RNA sequence and secondary structure alignment and editing
Seibel, P. N., Müller, T., Dandekar, T., et al. (2006) · BMC Bioinformatics · doi:10.1186/1471-2105-7-498 · Cited by 406 · see citing works
Kittelmann, S., Seedorf, H., Walters, W. A., Clemente, J. C., Knight, R. D., Gordon, J. I., & Janssen, P. H. (2013) · PLoS ONE · doi:10.1371/journal.pone.0047879 · Cited by 384 · see citing works
Self-citationFungal diversity notes 253–366: taxonomic and phylogenetic contributions to fungal taxa
Li, G. J., Hyde, K. D., Zhao, R. L., Hongsanan, S., Abdel-Aziz, F. A., Abdel-Wahab, M. A., Alvarado, P., Alves-Silva, G., Ammirati, J. F., Ariyawansa, H. A., et al. (2016) · Fungal Diversity · doi:10.1007/s13225-016-0366-9 · Cited by 379 · see citing works
Self-citationGruninger, R. J., Puniya, A. K., Callaghan, T. M., Edwards, J. E., Youssef, N. H., Dagar, S. S., Fliegerova, K. O., Griffith, G. W., Forster, R. J., Tsang, A., et al. (2014) · FEMS Microbiology Ecology · doi:10.1111/1574-6941.12383 · Cited by 364 · see citing works
Self-citationMethylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen
Poulsen, M., Schwab, C., Borg Jensen, B., Engberg, R. M., Spang, A., Canibe, N., Højberg, O., Milinovich, G., Fragner, L., Schleper, C., et al. (2013) · Nature Communications · doi:10.1038/ncomms2432 · Cited by 361 · see citing works
Microbial metabolomics: past, present and future methodologies
Mashego, M. R., Rumbold, K., Mey, M. D., Vandamme, E. J. M. C., Soetaert, W., & Heijnen, J. J. (2006) · Biotechnology Letters · doi:10.1007/s10529-006-9218-0 · Cited by 361 · see citing works
Li, F., & Guan, L. L. (2017) · Applied and Environmental Microbiology · doi:10.1128/aem.00061-17 · Cited by 346 · see citing works
Kamke, J., Kittelmann, S., Soni, P., Li, Y., Tavendale, M., Ganesh, S., Janssen, P. H., Shi, W., Froula, J., Rubin, E. M., et al. (2016) · Microbiome · doi:10.1186/s40168-016-0201-2 · Cited by 339 · see citing works
Self-citationWidespread adenine N6-methylation of active genes in fungi
Mondo, S. J., Dannebaum, R., Kuo, R. C., Louie, K., Bewick, A. J., LaButti, K. M., Haridas, S., Kuo, A., Salamov, A. A., Ahrendt, S. R., et al. (2017) · Nature Genetics · doi:10.1038/ng.3859 · Cited by 334 · see citing works
Self-citationHenderson, G., Cox, F., Kittelmann, S., Miri, V. H., Zethof, M., Noel, S. J., Waghorn, G. C., & Janssen, P. H. (2013) · PLoS ONE · doi:10.1371/journal.pone.0074787 · Cited by 328 · see citing works
Self-citationSchurch, N., Schofield, P., Gierliński, M., et al. (2015) · Edinburgh Research Explorer (University of Edinburgh) · doi:10.48550/arxiv.1505.02017 · Cited by 326 · see citing works
Seibel, P. N., Müller, T., Dandekar, T., et al. (2008) · BMC Research Notes · doi:10.1186/1756-0500-1-91 · Cited by 321 · see citing works
Bauchop, T., & Mountfort, D. O. (1981) · Applied and Environmental Microbiology · doi:10.1128/aem.42.6.1103-1110.1981 · Cited by 305 · see citing works
Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes
Solomon, K. V., Haitjema, C. H., Henske, J. K., Gilmore, S. P., Borges-Rivera, D., Lipzen, A., Brewer, H. M., Purvine, S. O., Wright, A. T., Theodorou, M. K., et al. (2016) · Science · doi:10.1126/science.aad1431 · Cited by 302 · see citing works
Self-citationFeist, P. E., & Hummon, A. B. (2015) · International Journal of Molecular Sciences · doi:10.3390/ijms16023537 · Cited by 289 · see citing works
Novel hydrolase diversity retrieved from a metagenome library of bovine rumen microflora
Ferrer, M., Golyshina, O. V., Chernikova, T. N., Khachane, A. N., Reyes‐Duarte, D., dos Santos, V. A. P. M., Strömpl, C., Elborough, K. M., Jarvis, G. N., Neef, A., et al. (2005) · Environmental Microbiology · doi:10.1111/j.1462-2920.2005.00920.x · Cited by 288 · see citing works
Liggenstoffer, A. S., Youssef, N. H., Couger, M. B., & Elshahed, M. S. (2010) · The ISME Journal · doi:10.1038/ismej.2010.49 · Cited by 258 · see citing works
Anaerobic fungi in herbivorous animals
Trinci, A. P. J., Davies, D. R., Gull, K., et al. (1994) · Mycological Research · doi:10.1016/s0953-7562(09)80178-0 · Cited by 251 · see citing works
Youssef, N. H., Couger, M. B., Struchtemeyer, C. G., Liggenstoffer, A. S., Prade, R. A., Najar, F. Z., Atiyeh, H. K., Wilkins, M. R., & Elshahed, M. S. (2013) · Applied and Environmental Microbiology · doi:10.1128/aem.00821-13 · Cited by 245 · see citing works
Dai, X., Tian, Y., Li, J., Su, X., Wang, X., Zhao, S., Liu, L., Luo, Y., Liu, D., Zheng, H., et al. (2014) · Applied and Environmental Microbiology · doi:10.1128/aem.03682-14 · Cited by 236 · see citing works
Growth of Anaerobic Rumen Fungi on Defined and Semi-defined Media Lacking Rumen Fluid
Lowe, S. E., Theodorou, M. K., Trinci, A. P. J., & Hespell, R. B. (1985) · Microbiology · doi:10.1099/00221287-131-9-2225 · Cited by 235 · see citing works
A parts list for fungal cellulosomes revealed by comparative genomics
Haitjema, C. H., Gilmore, S. P., Henske, J. K., Solomon, K., de Groot, R., Kuo, A., Mondo, S. J., Salamov, A. A., LaButti, K. M., Zhao, Z., et al. (2017) · Nature Microbiology · doi:10.1038/nmicrobiol.2017.87 · Cited by 223 · see citing works
Self-citationKong, Y., Teather, R. M., & Forster, R. J. (2010) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2010.00977.x · Cited by 218 · see citing works
Self-citationLarge-scale protein identification using mass spectrometry
Lin, D., Tabb, D. L., & Yates, J. R. (2003) · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics · doi:10.1016/s1570-9639(02)00546-0 · Cited by 209 · see citing works
Pope, P. B., Mackenzie, A. K., Gregor, I., Smith, W. J. M., Sundset, M. A., McHardy, A. C., Morrison, M., & Eijsink, V. G. H. (2012) · PLoS ONE · doi:10.1371/journal.pone.0038571 · Cited by 201 · see citing works
Patterns of fungal diversity and composition along a salinity gradient
Mohamed, D. J., & Martiny, J. B. H. (2010) · The ISME Journal · doi:10.1038/ismej.2010.137 · Cited by 194 · see citing works
Orpin, C. G., & Joblin, K. N. (1997) · Springer eBooks · doi:10.1007/978-94-009-1453-7_4 · Cited by 186 · see citing works
Comtet-Marre, S., Parisot, N., Lepercq, P., Chaucheyras‐Durand, F., Mosoni, P., Peyretaillade, É., Bayat, A. R., Shingfield, K. J., Peyret, P., & Forano, É. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.00067 · Cited by 183 · see citing works
Bowman, B. H., Taylor, J. W., Brownlee, A. G., et al. (1992) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040720 · Cited by 173 · see citing works
Keller, A., Förster, F., Müller, T., et al. (2010) · Biology Direct · doi:10.1186/1745-6150-5-4 · Cited by 171 · see citing works
Gilbert, H. J., Hazlewood, G. P., LAURIE, J. I., et al. (1992) · Molecular Microbiology · doi:10.1111/j.1365-2958.1992.tb01379.x · Cited by 154 · see citing works
The role of anaerobic gut fungi in ruminants
Gordon, G. L. R., & Phillips, M. W. (1998) · Nutrition Research Reviews · doi:10.1079/nrr19980009 · Cited by 148 · see citing works
FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
Lam, K.-K., LaButti, K. M., Khalak, A., & Tse, D. N. C. (2015) · Bioinformatics · doi:10.1093/bioinformatics/btv280 · Cited by 147 · see citing works
The legacy effect of cover crops on soil fungal populations in a cereal rotation
Detheridge, A. P., Brand, G., Fychan, R., Crotty, F., Sanderson, R., Griffith, G. W., & Marley, C. L. (2016) · Agriculture Ecosystems & Environment · doi:10.1016/j.agee.2016.04.022 · Cited by 145 · see citing works
Self-citationEdwards, J. E., Kingston‐Smith, A. H., Jiménez, H., Huws, S., ̧t, K. P. S., Griffith, G. W., McEwan, N. R., & Theodorou, M. K. (2008) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2008.00563.x · Cited by 139 · see citing works
Self-citationProfDistS: (profile-) distance based phylogeny on sequence—structure alignments
Wolf, M., Ruderisch, B., Dandekar, T., et al. (2008) · Bioinformatics · doi:10.1093/bioinformatics/btn453 · Cited by 135 · see citing works
Haitjema, C. H., Solomon, K., Henske, J. K., Theodorou, M. K., & O'Malley, M. A. (2014) · Biotechnology and Bioengineering · doi:10.1002/bit.25264 · Cited by 135 · see citing works
Self-citationBorneman, W. S., Akin, D. E., & Ljungdahl, L. G. (1989) · Applied and Environmental Microbiology · doi:10.1128/aem.55.5.1066-1073.1989 · Cited by 130 · see citing works
Wang, L., Hatem, A., Çatalyürek, Ü. V., Morrison, M., & Yu, Z. (2013) · PLoS ONE · doi:10.1371/journal.pone.0078507 · Cited by 130 · see citing works
Reference databases for taxonomic assignment in metagenomics
Santamaría, M., Fosso, B., Consiglio, A., Caro, G. D., Grillo, G., Licciulli, F., Liuni, S., Marzano, M., Alonso-Alemany, D., Valiente, G., et al. (2012) · Briefings in Bioinformatics · doi:10.1093/bib/bbs036 · Cited by 130 · see citing works
Influence of hydrogen-consuming bacteria on cellulose degradation by anaerobic fungi
Marvin-Sikkema, F. D., Richardson, A. J., Stewart, C. S., Gottschal, J. C., & Prins, R. A. (1990) · Applied and Environmental Microbiology · doi:10.1128/aem.56.12.3793-3797.1990 · Cited by 129 · see citing works
Snapshot of the Eukaryotic Gene Expression in Muskoxen Rumen—A Metatranscriptomic Approach
Qi, M., Wang, P., O’Toole, N., Barboza, P. S., Ungerfeld, E. M., Leigh, M. B., Selinger, L. B., Butler, G., Tsang, A., McAllister, T. A., et al. (2011) · PLoS ONE · doi:10.1371/journal.pone.0020521 · Cited by 129 · see citing works
Self-citationKittelmann, S., Naylor, G. E., Koolaard, J. P., & Janssen, P. H. (2012) · PLoS ONE · doi:10.1371/journal.pone.0036866 · Cited by 126 · see citing works
Self-citationMountfort, D. O., Asher, R. A., & Bauchop, T. (1982) · Applied and Environmental Microbiology · doi:10.1128/aem.44.1.128-134.1982 · Cited by 125 · see citing works
Orpin, C. G. (1977) · Journal of General Microbiology · doi:10.1099/00221287-99-1-215 · Cited by 123 · see citing works
Coastal marine habitats harbor novel early-diverging fungal diversity
Picard, K. T. (2016) · Fungal ecology · doi:10.1016/j.funeco.2016.10.006 · Cited by 121 · see citing works
Boxma, B., Voncken, F. G. J., Jannink, S. A., van Alen, T. A., Akhmanova, A. S., van Weelden, S. W. H., van Hellemond, J. J., Ricard, G., Huynen, M. A., Tielens, A. G. M., et al. (2004) · Molecular Microbiology · doi:10.1046/j.1365-2958.2003.03912.x · Cited by 118 · see citing works
Distribution of anaerobic fungi in the digestive tract of cattle and their survival in faeces
Davies, D. R., Theodorou, M. K., Lawrence, M. I. G., & Trinci, A. P. J. (1993) · Journal of General Microbiology · doi:10.1099/00221287-139-6-1395 · Cited by 117 · see citing works
Cheng, Y. F., Edwards, J. E., Allison, G. G., Zhu, W., & Theodorou, M. K. (2009) · Bioresource Technology · doi:10.1016/j.biortech.2009.04.031 · Cited by 112 · see citing works
Self-citationBrookman, J. L., Mennim, G., Trinci, A. P. J., et al. (2000) · Microbiology · doi:10.1099/00221287-146-2-393 · Cited by 106 · see citing works
Griffith, G. W., Özköse, E., Theodorou, M. K., & Davies, D. R. (2009) · Fungal ecology · doi:10.1016/j.funeco.2009.01.005 · Cited by 101 · see citing works
Self-citationMetagenomic analysis of the rumen microbiome of steers with wheat-induced frothy bloat
Pitta, D. W., Pinchak, W. E., Indugu, N., Vecchiarelli, B., Sinha, R., & Fulford, J. D. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00689 · Cited by 100 · see citing works
Anaerobic Fungi and Their Potential for Biogas Production
Flad, V., Podmirseg, S. M., Callaghan, T. M., Griffith, G. W., & Fliegerova, K. O. (2015) · Advances in biochemical engineering, biotechnology · doi:10.1007/978-3-319-21993-6_2 · Cited by 96 · see citing works
Self-citationGriffith, G. W., Callaghan, T. M., Podmirseg, S. M., et al. (2015) · MycoKeys · doi:10.3897/mycokeys.9.9032 · Cited by 96 · see citing works
Self-citationBuchheim, M. A., Keller, A., Koetschan, C., et al. (2011) · PLoS ONE · doi:10.1371/journal.pone.0016931 · Cited by 95 · see citing works
Jin, W., Cheng, Y., Mao, S., & Zhu, W. (2011) · Bioresource Technology · doi:10.1016/j.biortech.2011.06.026 · Cited by 87 · see citing works
Self-citationLowe, S. E., Theodorou, M. K., & Trinci, A. P. J. (1987) · Applied and Environmental Microbiology · doi:10.1128/aem.53.6.1210-1215.1987 · Cited by 87 · see citing works
Orpin, C. G., & Munn, E. A. (1986) · Transactions of the British Mycological Society · doi:10.1016/s0007-1536(86)80138-3 · Cited by 86 · see citing works
Lee, S. S., Ha, J. K., & Cheng, K.-J. (2000) · Animal Feed Science and Technology · doi:10.1016/s0377-8401(00)00216-9 · Cited by 86 · see citing works
Phillips, M. W., & Gordon, G. L. R. (1988) · Biosystems · doi:10.1016/0303-2647(88)90036-6 · Cited by 85 · see citing works
Taxonomic Assessment of Rumen Microbiota Using Total RNA and Targeted Amplicon Sequencing Approaches
Li, F., Henderson, G., Sun, X., Cox, F., Janssen, P. H., & Guan, L. L. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00987 · Cited by 85 · see citing works
Distribution and estimation of anaerobic zoosporic fungi along the digestive tracts of sheep
Rezaeian, M., Beakes, G. W., & Parker, D. S. (2004) · Mycological Research · doi:10.1017/s0953756204000929 · Cited by 82 · see citing works
Koetschan, C., Kittelmann, S., Lu, J., Al-Halbouni, D., Jarvis, G. N., Müller, T., Wolf, M., & Janssen, P. H. (2014) · PLoS ONE · doi:10.1371/journal.pone.0091928 · Cited by 80 · see citing works
Self-citationPenetrating Structures of Anaerobic Rumen Fungi in Cattle and Swamp Buffalo
Ho, Y. W., Abdullah, N., & Jalaludin, S. (1988) · Microbiology · doi:10.1099/00221287-134-1-177 · Cited by 80 · see citing works
Couger, M. B., Youssef, N. H., Struchtemeyer, C. G., Liggenstoffer, A. S., & Elshahed, M. S. (2015) · Biotechnology for Biofuels · doi:10.1186/s13068-015-0390-0 · Cited by 80 · see citing works
Özköse, E., Thomas, B., Davies, D. R., et al. (2001) · Canadian Journal of Botany · doi:10.1139/b01-047 · Cited by 79 · see citing works
Xue, G., Orpin, C. G., Gobius, K. S., et al. (1992) · Journal of General Microbiology · doi:10.1099/00221287-138-7-1413 · Cited by 78 · see citing works
Hanafy, R. A., Elshahed, M. S., Liggenstoffer, A. S., et al. (2017) · Mycologia · doi:10.1080/00275514.2017.1317190 · Cited by 78 · see citing works
Tuckwell, D. S., Nicholson, M. J., McSweeney, C. S., et al. (2005) · Microbiology · doi:10.1099/mic.0.27689-0 · Cited by 75 · see citing works
Dagar, S. S., Kumar, S., Griffith, G. W., et al. (2015) · Fungal Biology · doi:10.1016/j.funbio.2015.04.005 · Cited by 74 · see citing works
Self-citationLi, J., & Heath, I. B. (1992) · Canadian Journal of Botany · doi:10.1139/b92-215 · Cited by 74 · see citing works
Microbial communities for bioprocessing: lessons learned from nature
Peng, X., Gilmore, S. P., & O'Malley, M. A. (2016) · Current Opinion in Chemical Engineering · doi:10.1016/j.coche.2016.09.003 · Cited by 74 · see citing works
Self-citationMolecular Biological Detection of Anaerobic Gut Fungi ( Neocallimastigales ) from Landfill Sites
Lockhart, R. J., Dyke, M. I. V., Beadle, I. R., et al. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.01057-06 · Cited by 73 · see citing works
Doré, J., & Stahl, D. A. (1991) · Canadian Journal of Botany · doi:10.1139/b91-246 · Cited by 72 · see citing works
Microbial proteomics: a mass spectrometry primer for biologists
Graham, R. L., Graham, C., & McMullan, G. (2007) · Microbial Cell Factories · doi:10.1186/1475-2859-6-26 · Cited by 69 · see citing works
Puniya, A. K., Salem, A. Z. M., Kumar, S., Dagar, S. S., Griffith, G. W., Puniya, M., Ravella, S. R., Kumar, N., Dhewa, T., & Kumar, R. (2015) · Journal of Integrative Agriculture · doi:10.1016/s2095-3119(14)60837-6 · Cited by 68 · see citing works
Self-citationAnaerobic Fungi: A Potential Source of Biological H2 in the Oceanic Crust
Ivarsson, M., Schnürer, A., Bengtson, S., & Neubeck, A. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00674 · Cited by 68 · see citing works
Wurzbacher, C., Warthmann, N., Bourne, E. C., et al. (2016) · MycoKeys · doi:10.3897/mycokeys.16.9646 · Cited by 67 · see citing works
D1/D2 Domain of Large-Subunit Ribosomal DNA for Differentiation of Orpinomyces spp
Dagar, S. S., Kumar, S., Mudgil, P., et al. (2011) · Applied and Environmental Microbiology · doi:10.1128/aem.05441-11 · Cited by 62 · see citing works
Self-citationMackie, R. I., Rycyk, M., Ruemmler, R. L., Aminov, R. I., & Wikelski, M. C. (2004) · Physiological and Biochemical Zoology · doi:10.1086/383498 · Cited by 60 · see citing works
Enhanced biogas yield from energy crops with rumen anaerobic fungi
Procházka, J., Mrázek, J., Štrosová, L., et al. (2012) · Engineering in Life Sciences · doi:10.1002/elsc.201100076 · Cited by 59 · see citing works
Bernalier, A., Fonty, G., Bonnemoy, F., & Gouet, P. (1992) · Current Microbiology · doi:10.1007/bf01571022 · Cited by 59 · see citing works
Anaerobic fungi in the digestive tract of mammalian herbivores and their potential for exploitation
Theodorou, M. K., Mennim, G., Davies, D. R., Zhu, W., Trinci, A. P. J., & Brookman, J. L. (1996) · Proceedings of The Nutrition Society · doi:10.1079/pns19960088 · Cited by 59 · see citing works
Wei, Y.-Q., Long, R., Yang, H., Yang, H., Shen, X., Shi, R., Wang, Z., Du, J.-G., Qi, X.-J., & Ye, Q.-H. (2016) · Anaerobe · doi:10.1016/j.anaerobe.2016.03.005 · Cited by 55 · see citing works
Leis, S., Dresch, P., Peintner, U., Fliegerova, K. O., Sandbichler, A. M., Insam, H., & Podmirseg, S. M. (2014) · Anaerobe · doi:10.1016/j.anaerobe.2013.12.002 · Cited by 54 · see citing works
Self-citationDiversity of anaerobic fungi within cow manure determined by ITS1 analysis
Fliegerova, K. O., Mrázek, J., Hoffmann, K., et al. (2010) · Folia Microbiologica · doi:10.1007/s12223-010-0049-y · Cited by 52 · see citing works
Self-citationThe survival of anaerobic fungi in cattle faeces
McGranaghan, P., Davies, J. C., Griffith, G. W., et al. (1999) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.1999.tb00620.x · Cited by 52 · see citing works
Self-citationPaul, S. S., Kamra, D. N., Sastry, V. R. B., Sahu, N. P., & Agarwal, N. (2004) · Animal Feed Science and Technology · doi:10.1016/j.anifeedsci.2004.01.010 · Cited by 50 · see citing works
Driving biomass breakdown through engineered cellulosomes
Gilmore, S. P., Henske, J. K., & O'Malley, M. A. (2015) · Bioengineered · doi:10.1080/21655979.2015.1060379 · Cited by 49 · see citing works
Self-citationEberhardt, R. Y., Gilbert, H. J., & Hazlewood, G. P. (2000) · Microbiology · doi:10.1099/00221287-146-8-1999 · Cited by 48 · see citing works
Molecular analysis of the anaerobic rumen fungus Orpinomyces – insights into an AT-rich genome
Nicholson, M. J., Theodorou, M. K., & Brookman, J. L. (2005) · Microbiology · doi:10.1099/mic.0.27353-0 · Cited by 48 · see citing works
Phylogeny of anaerobic fungi (phylum Neocallimastigomycota), with contributions from yak in China
Wang, X., Liu, X., & Groenewald, J. Z. (2016) · Antonie van Leeuwenhoek · doi:10.1007/s10482-016-0779-1 · Cited by 48 · see citing works
Elekwachi, C. O., Wang, Z., Wu, X., Rabee, A., & Forster, R. J. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.01814 · Cited by 48 · see citing works
Self-citationNicholson, M. J., McSweeney, C. S., Mackie, R. I., et al. (2009) · Anaerobe · doi:10.1016/j.anaerobe.2009.05.003 · Cited by 47 · see citing works
Dey, A., Sehgal, J. P., Puniya, A. K., & Singh, K. (2004) · Asian-Australasian Journal of Animal Sciences · doi:10.5713/ajas.2004.820 · Cited by 47 · see citing works
Self-citationMorgavi, D. P., Sakurada, M., Tomita, Y., & Onodera, R. (1994) · Microbiology · doi:10.1099/00221287-140-3-631 · Cited by 47 · see citing works
Calkins, S., Elledge, N. C., Hanafy, R. A., et al. (2016) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2016.05.019 · Cited by 45 · see citing works
Detection and monitoring of anaerobic rumen fungi using an ARISA method
Denman, S. E., Nicholson, M. J., Brookman, J. L., Theodorou, M. K., & McSweeney, C. S. (2008) · Letters in Applied Microbiology · doi:10.1111/j.1472-765x.2008.02449.x · Cited by 44 · see citing works
Srinivasan, K., Murakami, M., Nakashimada, Y., et al. (2001) · Journal of Bioscience and Bioengineering · doi:10.1016/s1389-1723(01)80058-x · Cited by 44 · see citing works
Presence and transcriptional activity of anaerobic fungi in agricultural biogas plants
Flad, V., Callaghan, T. M., Griffith, G. W., et al. (2017) · Bioresource Technology · doi:10.1016/j.biortech.2017.03.116 · Cited by 44 · see citing works
Self-citationThorsen, M. (1999) · Marine Biology · doi:10.1007/s002270050474 · Cited by 43 · see citing works
Nakashimada, Y., Srinivasan, K., Murakami, M., & Nishio, N. (2000) · Biotechnology Letters · doi:10.1023/a:1005666428494 · Cited by 42 · see citing works
Differentiation of anaerobic polycentric fungi by rDNA PCR-RFLP
Fliegerova, K. O., Mrázek, J., & Voigt, K. (2006) · Folia Microbiologica · doi:10.1007/bf02931811 · Cited by 42 · see citing works
Self-citationFliegerova, K. O., Hodrová, B., & Voigt, K. (2004) · Folia Microbiologica · doi:10.1007/bf02931392 · Cited by 42 · see citing works
Self-citationBuchheim, M. A., Sutherland, D. M., Schleicher, T., et al. (2011) · Annals of Botany · doi:10.1093/aob/mcr275 · Cited by 42 · see citing works
Effect of administration of rumen fungi on production performance of lactating buffaloes
Saxena, S., Sehgal, J. P., Puniya, A. K., & Singh, K. P. (2010) · Beneficial Microbes · doi:10.3920/bm2009.0018 · Cited by 41 · see citing works
Self-citationTripathi, V. K., Sehgal, J. P., Puniya, A. K., & Singh, K. P. (2007) · Archives of Animal Nutrition · doi:10.1080/17450390701556759 · Cited by 40 · see citing works
Self-citationGlucose metabolic pathways in the anaerobic rumen fungus Neocallimastix frontalis EB188
O’Fallon, J. V., Wright, R. W., & Calza, R. E. (1991) · Biochemical Journal · doi:10.1042/bj2740595 · Cited by 39 · see citing works
Bernalier, A., Fonty, G., & Gouët, P. (1991) · Animal Feed Science and Technology · doi:10.1016/0377-8401(91)90016-l · Cited by 39 · see citing works
Herrera, J., Poudel, R., & Khidir, H. H. (2010) · Microbial Ecology · doi:10.1007/s00248-010-9744-0 · Cited by 37 · see citing works
The effect of anaerobic fungal inoculation on the fermentation characteristics of rice straw silages
Lee, S. M., Lee, S. M., Guan, L., et al. (2014) · Journal of Applied Microbiology · doi:10.1111/jam.12724 · Cited by 36 · see citing works
Morgavi, D. P., Sakurada, M., Mizokami, M., Tomita, Y., & Onodera, R. (1994) · Applied and Environmental Microbiology · doi:10.1128/aem.60.10.3718-3723.1994 · Cited by 36 · see citing works
Wei, Y., Yang, H., Luan, Y., et al. (2015) · Journal of Applied Microbiology · doi:10.1111/jam.13035 · Cited by 35 · see citing works
Wang, P., Qi, M., Barboza, P. S., Leigh, M. B., Ungerfeld, E. M., Selinger, L. B., McAllister, T. A., & Forster, R. J. (2011) · Canadian Journal of Microbiology · doi:10.1139/w11-048 · Cited by 34 · see citing works
Self-citationReymond, P., Geourjon, C., Roux, B., et al. (1992) · Gene · doi:10.1016/0378-1119(92)90444-t · Cited by 33 · see citing works
Hausner, G., Inglis, G. D., Yanke, L. J., et al. (2000) · Canadian Journal of Botany · doi:10.1139/b00-067 · Cited by 33 · see citing works
Khejornsart, P., Wanapat, M., & Rowlinson, P. (2011) · Livestock Science · doi:10.1016/j.livsci.2011.01.011 · Cited by 32 · see citing works
Quantitative methods for the analysis of zoosporic fungi
Marano, A. V., Gleason, F. H., Bärlocher, F., Pires‐Zottarelli, C. L. A., Lilje, O., Schmidt, S. K., Rasconi, S., Kagami, M., Barrera, M. D., Sime‐Ngando, T., et al. (2012) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2012.02.003 · Cited by 31 · see citing works
Self-citationFlad, V., Callaghan, T. M., Dorn‐In, S., Bauer, J., & Lebuhn, M. (2016) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2016.05.017 · Cited by 31 · see citing works
Self-citationCheng, Y. F., Jin, W., Mao, S. Y., et al. (1970) · Asian-Australasian Journal of Animal Sciences · doi:10.5713/ajas.2013.13134 · Cited by 30 · see citing works
Self-citationRobust and effective methodologies for cryopreservation and DNA extraction from anaerobic gut fungi
Solomon, K., Henske, J. K., Theodorou, M. K., et al. (2015) · Anaerobe · doi:10.1016/j.anaerobe.2015.11.008 · Cited by 30 · see citing works
Self-citationPaul, S. S., Kamra, D. N., & Sastry, V. R. B. (2010) · Archives of Animal Nutrition · doi:10.1080/17450391003625037 · Cited by 29 · see citing works
Xylanolysis by cocultures of the rumen fungus Neocallimastix frontalis and ruminal bacteria
Williams, A. G., Withers, S. E., & Joblin, K. N. (1991) · Letters in Applied Microbiology · doi:10.1111/j.1472-765x.1991.tb00547.x · Cited by 29 · see citing works
Roger, V., Grenet, E., JAMOT, J., et al. (1992) · annales de biologie animale biochimie biophysique · doi:10.1051/rnd:19920402 · Cited by 28 · see citing works
Xue, G., Denman, S. E., Glassop, D., et al. (1995) · Journal of Biotechnology · doi:10.1016/0168-1656(94)00133-w · Cited by 27 · see citing works
Real-Time PCR Assays for Monitoring Anaerobic Fungal Biomass and Population Size in the Rumen
Lwin, K. O., Hayakawa, M., Ban‐Tokuda, T., & Matsui, H. (2010) · Current Microbiology · doi:10.1007/s00284-010-9843-7 · Cited by 27 · see citing works
Chen, H., Li, X. L., & Ljungdahl, L. G. (1995) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.92.7.2587 · Cited by 25 · see citing works
Kostyukovsky, V., Окунев, О. Н., & Тараканов, Б. В. (1991) · Journal of General Microbiology · doi:10.1099/00221287-137-7-1759 · Cited by 21 · see citing works
The Rumen Ecosystem : As a Fountain Sources of Nobel Enzymes - Review -
Lee, S. S., Shin, K.-J., Kim, W. Y., et al. (1999) · Asian-Australasian Journal of Animal Sciences · doi:10.5713/ajas.1999.988 · Cited by 21 · see citing works
Discovering Protein-Coding Genes from the Environment: Time for the Eukaryotes?
Marmeisse, R., Kellner, H., Fraissinet‐Tachet, L., et al. (2017) · Trends in biotechnology · doi:10.1016/j.tibtech.2017.02.003 · Cited by 20 · see citing works
Widyastuti, Y., Newbold, C. J., Stewart, C. S., et al. (1995) · Letters in Applied Microbiology · doi:10.1111/j.1472-765x.1995.tb00408.x · Cited by 18 · see citing works
Sekhavati, M. H., Mesgaran, M. D., Nassiri, M., et al. (2009) · Mycological Research · doi:10.1016/j.mycres.2009.07.017 · Cited by 18 · see citing works
Khejornsart, P., & Wanapat, M. (2010) · Journal of Animal and Veterinary Advances · doi:10.3923/javaa.2010.3062.3069 · Cited by 18 · see citing works
Hinsu, A., Parmar, N. R., Nathani, N. M., Pandit, R. J., Patel, A. B., Patel, A. K., & Joshi, C. G. (2017) · Anaerobe · doi:10.1016/j.anaerobe.2017.02.021 · Cited by 18 · see citing works
Metabolomics applied in bioenergy
Abdelnur, P. V., Caldana, C., & Martins, M. C. M. (2014) · Chemical and Biological Technologies in Agriculture · doi:10.1186/s40538-014-0022-0 · Cited by 17 · see citing works
Belila, A., El-Chakhtoura, J., Saikaly, P. E., et al. (2016) · Environmental Science Water Research & Technology · doi:10.1039/c6ew00265j · Cited by 16 · see citing works
Williams, A. G., Withers, S. E., Naylor, G. E., et al. (1994) · Letters in Applied Microbiology · doi:10.1111/j.1472-765x.1994.tb00917.x · Cited by 15 · see citing works
Kwon, M. K., Song, J., Ha, J. K., et al. (2009) · Asian-Australasian Journal of Animal Sciences · doi:10.5713/ajas.2009.80371 · Cited by 14 · see citing works
Molecular Identification of Anaerobic Rumen Fungi
Eckart, M., Fliegerova, K. O., Hoffmann, K., & Voigt, K. (2010) · Springer eBooks · doi:10.1007/978-3-642-05042-8_14 · Cited by 13 · see citing works
Self-citationSynchronization of Cell Cycle of Saccharomyces cerevisiae by Using a Cell Chip Platform
Hur, J. Y., Park, M. C., Suh, K. Y., & Park, S. (2011) · Molecules and Cells · doi:10.1007/s10059-011-0174-8 · Cited by 13 · see citing works
Bernalier, A., Fonty, G., Bonnemoy, F., & Gouet, P. (1993) · annales de biologie animale biochimie biophysique · doi:10.1051/rnd:19930609 · Cited by 13 · see citing works
Special Properties of Polycentric Anaerobic Fungus Anaeromyces mucronatus
Fliegerova, K. O., Pažoutová, S., Mrázek, J., et al. (2002) · Acta Veterinaria Brno · doi:10.2754/avb200271040441 · Cited by 13 · see citing works
Self-citationFermentation activities of some new species of anaerobic rumen fungi from Malaysia.
Ho, Y. W., WONG, M. V.-L., ABDULLAN, N., et al. (1996) · The Journal of General and Applied Microbiology · doi:10.2323/jgam.42.51 · Cited by 10 · see citing works
Paul, S. S., Kamra, D. N., & Sastry, V. R. B. (2004) · Cited by 10 · see citing works
Dighton, J., & White, J. F. (2017) · Cited by 4 · see citing works
Kittelmann, S., Manohar, C. S., Kearney, R., Natvig, D. O., & Gleason, F. H. (2017) · Mycology · doi:10.1201/9781315119496-19 · Cited by 3 · see citing works
Self-citationKumar, S. (2014) · 2014 ADSA-ASAS-CSAS Joint Annual Meeting · Cited by 2 · see citing works
Flagged first, then by citations
Research works printed but not linked: 2
- Callaghan T. M. (2014). Developing Tools for the Identification and Taxonomic Placement of the Neocallimastigales. Ph.D. Thesis. Aberystwyth University, Wales.
- Park M. A. (2011). Genomic and Proteomic Approaches for Elucidation of Carbohydrate Metabolism in Anaerobic Rumen Fungus, Neocallimastix frontalis PMA02. Ph.D. Thesis, Seoul National University.
Cited by
Sorted by citations
Huws, S. A., Creevey, C. J., Oyama, L. B., Mizrahi, I., Denman, S. E., Popova, M., Muñoz-Tamayo, R., Forano, E., Waters, S. M., Hess, M., et al. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02161 · Cited by 487 · see citing works
Self-citationHassan, F.-U., Arshad, M. A., Ebeid, H. M., Rehman, M. S.-U., Khan, M. S., Shahid, S., & Yang, C. (2020) · Frontiers in Veterinary Science · doi:10.3389/fvets.2020.575801 · Cited by 160 · see citing works
Elekwachi, C. O., Wang, Z., Wu, X., Rabee, A., & Forster, R. J. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.01814 · Cited by 48 · see citing works
Self-citation
- Authors
- Edwards, J. E., Forster, R. J., Callaghan, T. M., Dollhofer, V., Dagar, S. S., Cheng, Y., Chang, J., Kittelmann, S., Fliegerova, K., Puniya, A. K., Henske, J. K., Gilmore, S. P., O'Malley, M. A., Griffith, G. W., & Smidt, H.
- Affiliations
- Wageningen University & Research (NL)
- Agriculture and Agri-Food Canada (CA)
- Bavarian State Research Center for Agriculture (DE)
- Agharkar Research Institute (IN)
- Nanjing Agricultural University (CN)
- AgResearch (NZ)
- Czech Academy of Sciences (CZ)
- National Dairy Research Institute (IN)
- University of California, Santa Barbara (US)
- Aberystwyth University (GB)
- Corresponding author
- Edwards, Joan E.
- ORCID
- Venue
- Frontiers in Microbiology
- Publisher
- Frontiers Media SA
- Published
- 2017-09-25
- Volume
- 8
- Pages
- 1657-1657
- ISSN
- 1664-302X (ISSN-L)
- PMC
- PMC5622200
- OpenAlex
- W2759809410
- Cited by
- 130
- References
- 174
- Citations by year
- 2026: 7 · 2025: 12 · 2024: 13 · 2023: 11 · 2022: 14 · 2021: 13 · 2020: 28 · 2019: 16 · 2018: 15 · 2017: 1
- FWCI
- 2.67
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- cc-by
- Locations
- Frontiers in Microbiology (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Socio-Environmental Systems Modeling (acceptedVersion, cc-by)
- OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (submittedVersion)
- ASEP (submittedVersion, public-domain)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Figshare (submittedVersion, cc-by)
- Data Archiving and Networked Services (DANS) (submittedVersion, cc-by)
- Greater South Information System
- Funders
- National Science Foundation (1553721, W911NF-09-0001)
- U.S. Department of Energy (DESC0010352)
- Joint Genome Institute
- European Commission (706899)
- Department of Biotechnology, Ministry of Science and Technology, India
- Office of Science
- Horizon 2020 Framework Programme (EU‐H2020)
- Biotechnology and Biological Sciences Research Council
- Biological and Environmental Research (DE-SC0010352)
- Core Research for Evolutional Science and Technology
- Army Research Office (W911NF-09-0001, W911NF)
- Institute for Collaborative Biotechnologies (W911NF‐09‐0001)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Agronomy and Crop Science › Ruminant Nutrition and Digestive Physiology
- Physical Sciences › Engineering › Building and Construction › Anaerobic Digestion and Biogas Production
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Keywords
- anaerobic fungi, Neocallimastigomycota, rumen fungi, fungal diversity, fungal ecology, lignocellulose degradation, ITS1, large subunit rRNA, niche differentiation, fungal genomics, transcriptomics, proteomics, metabolomics, functional annotation, reference database
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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