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The bile acid-inducible baiF gene from Eubacterium sp. strain VPI 12708 encodes a bile acid-coenzyme A hydrolase

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Clostridioides difficile proline fermentation in response to commensal clostridia

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Differential View on the Bile Acid Stress Response of Clostridioides difficile

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Potential biomarkers to predict outcome of faecal microbiota transfer for recurrent Clostridioides difficile infection

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Extension of the Stickland reaction to several bacterial species.

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Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut

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Physiological Role of Bile Acids Modified by the Gut Microbiome

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Antibiotics promote intestinal growth of carbapenem-resistant <i>Enterobacteriaceae</i> by enriching nutrients and depleting microbial metabolites

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Connecting the Gut Microbiota and Neurodegenerative Diseases: the Role of Bile Acids

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Clostridioides difficile and Gut Microbiota: From Colonization to Infection and Treatment

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Gut Enterobacteriaceae and uraemic toxins - Perpetrators for ageing

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Bile acids impact the microbiota, host, and C. difficile dynamics providing insight into mechanisms of efficacy of FMTs and microbiota-focused therapeutics

McMillan, A. S., & Theriot, C. M. (2024) · Gut Microbes · doi:10.1080/19490976.2024.2393766 · Cited by 39 · see citing works

The development of live biotherapeutics against Clostridioides difficile infection towards reconstituting gut microbiota

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Randomly barcoded transposon mutant libraries for gut commensals I: Strategies for efficient library construction

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Gut microbiota and bile acids: Metabolic interactions and impacts on diabetic kidney disease

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Human Fecal Bile Acid Analysis after Investigational Microbiota-Based Live Biotherapeutic Delivery for Recurrent Clostridioides difficile Infection

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The natural product chlorotonil A preserves colonization resistance and prevents relapsing Clostridioides difficile infection

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Dietary Fiber Modulates the Window of Susceptibility to Clostridioides difficile Infection

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Clostridioides difficile Infection: Landscape and Microbiome Therapeutics.

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Diagnosis and Management of Clostridioides difficile in Inflammatory Bowel Disease

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Proton-pump inhibitors increase C. difficile infection risk by altering pH rather than by affecting the gut microbiome based on a bioreactor model

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Differential modulation of post-antibiotic colonization resistance to Clostridioides difficile by two probiotic Lactobacillus strains

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Co-colonization of different species harboring KPC or NDM carbapenemase in the same host gut: insight of resistance evolution by horizontal gene transfer

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Commensal-pathogen dynamics structure disease outcomes during Clostridioides difficile colonization

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Effect of Nematodes-Bacteria Complex Metabolites on Cancer and Tumor Progression

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The alteration of fecal microbial and metabolic profile of gallstone patients in Taiwan: Single-center study

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Clostridium difficile and gut health: Bacteria, the gut microbiome, and diet

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Antimicrobial effects of cannabidiol on select agriculturally important Clostridia

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Distinct bile salt hydrolase substrate preferences dictate C. difficile pathogenesisPreprint

Foley, M. H., Walker, M. E., Stewart, A. K., O’Flaherty, S., Gentry, E. C., Allen, G. B., Patel, S., Pan, M., Beaty, V. V., Vanhoy, M. E., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.03.24.485529 · Cited by 4 · see citing works

Advances in Understanding the Pathogenesis of Clostridioides difficile Infection

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Helicovermis profundi gen. nov., sp. nov., a novel mesophilic, asporogenous bacterium within the Clostridia isolated from a deep-sea hydrothermal vent chimney

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Synthesis of TUDCA from chicken bile: immobilized dual-enzymatic system for producing artificial bear bile substitute

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Effects of ultrasound-induced stress on gut microbiota of mice

Chernukha, I. M., Vasilevskaya, E. R., Klimina, K. M., Yunes, R. А., Kupaeva, N. V., Сергеевна, Т. Г., Kibitkina, A. A., Даниленко, В. Н., Karabanov, S. Y., & Fedulova, L. (2023) · Veterinary World · doi:10.14202/vetworld.2023.929-938 · Cited by 2 · see citing works

C. difficile-infection and microbyota in newborns: resolved and outstanding issues

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Metabolic and pathogenic implications of sialic acid utilization in Clostridioides difficile infection

Junior, D. M. D. S., Martins, G. C., Ferreira-Moura, T. A., Ordine, J. V. W., & Zaramela, L. S. (2025) · Future Microbiology · doi:10.1080/17460913.2025.2603859 · Cited by 1 · see citing works

Gut Microbiota and Metabolism in Different Stages of Life and Health

Parkar, S. G., & Gopal, P. K. (2022) · Microorganisms · doi:10.3390/microorganisms10020474 · Cited by 1 · see citing works

The Efficacy of Fecal Microbiota Transplantation in Mouse Models Infected with Clostridioides difficile from the Perspective of Metabolic Profiling: A Systematic Review

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Decoupling bile acid 7α-dehydroxylation from colonization resistance to Clostridioides difficilePreprint

Beldi, L., Dong, Y., Volet, C., Tandon, D., Filipová, K., Bernier‐Latmani, R., & Hapfelmeier, S. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.05.20.655077 · Cited by 1 · see citing works

Influence of microbiota on the growth and gene expression of Clostridioides difficile in an in vitro coculture model

Martínez, E. D., Berg, N., Rodriguez, C., Daube, G., & Taminiau, B. (2024) · MicrobiologyOpen · doi:10.1002/mbo3.70001

Negative biodiversity-ecosystem function relationship in broad but not in narrow functions within pitcher plant microbial communitiesPreprint

Cuellar‐Gempeler, C., Bravo, J. A., Malekos, E., Perez-Sornia, D., Monaco, M., Grandmont-Lemire, S., & Teigen, M. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.07.11.664437

Understanding the Pathophysiology of Clostridioides difficile Infection, Colonization, and Making an Accurate Diagnosis

Blomker, J., & Vaughn, B. P. (2026) · Gastroenterology Clinics of North America · doi:10.1016/j.gtc.2026.05.003

Management of Clostridioides difficile Infection in Patients with Inflammatory Bowel Disease

Zou, W. Y., & Newman, K. L. (2026) · Gastroenterology Clinics of North America · doi:10.1016/j.gtc.2026.05.007

Differential use of Stickland fermentation by Lachnospiraceae regulates Clostridioides difficile growth

Moore, A. E., Leclercq, G. M. E., Moffatt, L. S., Fitzgerald, B. G., & Sorbara, M. T. (2026) · Gut Microbiology · doi:10.1016/j.gutmic.2026.100015

The impact of fecal microbiota transplantation on host immunity and epithelial restoration following Clostridioides difficile infection

Moreau, G. B., & Petri, W. A. (2026) · Anaerobe · doi:10.1016/j.anaerobe.2026.103060

Contribution of Inhibitory Metabolites and Competition for Nutrients to Colonization Resistance against Clostridioides difficile by Commensal Clostridia.

Reed, A. D. (2021) · NCSU Libraries Repository (North Carolina State University Libraries)

Food for thought—The link between Clostridioides difficile metabolism and pathogenesis

Marshall, A., McGrath, J. W., Graham, R., & McMullan, G. (2023) · PLoS Pathogens · doi:10.1371/journal.ppat.1011034 · Cited by 50 · see citing works

Bile acid dependent attenuation of toxin mediated disease is independent of colonization resistance against C. difficilePreprint

Kisthardt, S. C., Perkins, C. E., Gancz, A. S., Lyons, N. S., Thomas, S., Vincent, E., Zhang, G., Tam, J., Melnyk, R. A., Rose, E. C., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.03.11.711146 · Cited by 2 · see citing works

Gut associated metabolites and their roles in Clostridioides difficile pathogenesis

Aguirre, A. M., & Sorg, J. A. (2022) · Gut Microbes · doi:10.1080/19490976.2022.2094672 · Cited by 39 · see citing works

Mathematical modeling of the effects of nutrient competition and bile acid metabolism by the gut microbiota on colonization resistance against Clostridium difficile

Jabbari, S., Fleming-Davies, A., Robertson, S. L., Asih, T. S. N., Lanzas, C., Lenhart, S., & Theriot, C. M. (2017) · University of Birmingham Research Portal (University of Birmingham)