Check biochemistry, genetics and molecular biology papers: citations, claims and retractions

dmrff: identifying differentially methylated regions efficiently with power and control

Suderman, M., Staley, J. R., French, R., Arathimos, R., Simpkin, A., & Tilling, K. (2018) · bioRxiv (Cold Spring Harbor Laboratory)

Epigenetics and DNA MethylationGenomics and Chromatin Dynamics

Cited by 120

Autophagy in T cells from aged donors is maintained by spermidine and correlates with function and vaccine responses

Alsaleh, G., Panse, I., Swadling, L., Zhang, H., Richter, F. C., Meyer, A., Lord, J., Barnes, E., Klenerman, P., Green, C., et al. (2020) · eLife

Autophagy in Disease and TherapyT-cell and B-cell Immunology

Cited by 120

TEAD family transcription factors in development and disease

Currey, L., Thor, S., & Piper, M. (2021) · Development

Hippo pathway signaling and YAP/TAZDevelopmental Biology and Gene Regulation

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The tumour hypoxia induced non-coding transcriptome

Choudhry, H., Harris, A. L., & McIntyre, A. (2016) · Molecular Aspects of Medicine

Cancer, Hypoxia, and MetabolismCancer-related molecular mechanisms research

Cited by 120

Enhancer-promoter interactions can bypass CTCF-mediated boundaries and contribute to phenotypic robustness

Chakraborty, S., Kopitchinski, N., Zuo, Z., Eraso, A., Awasthi, P., Chari, R., Mitra, A., Tobias, I. C., Moorthy, S. D., Dale, R. K., et al. (2023) · Nature Genetics

Genomics and Chromatin DynamicsDevelopmental Biology and Gene Regulation

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Differential recruitment of glucocorticoid receptor phospho-isoforms to glucocorticoid-induced genes

Blind, R. D., & Garabedian, M. J. (2008) · The Journal of Steroid Biochemistry and Molecular Biology

Estrogen and related hormone effectsGenomics and Chromatin Dynamics

Cited by 120

Histone modifications and exercise adaptations

McGee, S. L., & Hargreaves, M. (2011) · Journal of Applied Physiology

Genomics and Chromatin DynamicsHistone Deacetylase Inhibitors Research

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Codon usage regulates protein structure and function by affecting translation elongation speed in Drosophila cells

Zhao, F., Yu, C.-H., & Liu, Y. (2017) · Nucleic Acids Research

RNA and protein synthesis mechanismsRNA modifications and cancer

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Chloroquine inhibits the intracellular multiplication of Legionella pneumophila by limiting the availability of iron. A potential new mechanism for the therapeutic effect of chloroquine against intracellular pathogens.

Byrd, T. F., & Horwitz, M. A. (1991) · Journal of Clinical Investigation

Legionella and Acanthamoeba researchBacterial biofilms and quorum sensing

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Pooled ChIP-Seq Links Variation in Transcription Factor Binding to Complex Disease Risk

Tehranchi, A. K., Myrthil, M., Martin, T., Hie, B. L., Golan, D., & Fraser, H. B. (2016) · Cell

Genomics and Chromatin DynamicsGenetic Associations and Epidemiology

Cited by 120

DINGO: differential network analysis in genomics

Ha, M. J., Baladandayuthapani, V., & Do, K.-A. (2015) · Bioinformatics

Bioinformatics and Genomic NetworksGene expression and cancer classification

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Predictomes, a classifier-curated database of AlphaFold-modeled protein-protein interactions

Schmid, E. W., & Walter, J. C. (2025) · Molecular Cell

Protein Structure and DynamicsBioinformatics and Genomic Networks

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Addressing Bias in Small RNA Library Preparation for Sequencing: A New Protocol Recovers MicroRNAs that Evade Capture by Current Methods

Baran-Gale, J., Kurtz, C. L., Erdos, M. R., Sison, C., Young, A., Fannin, E. E., Chines, P. S., & Sethupathy, P. (2015) · Frontiers in Genetics

Genomics and Phylogenetic StudiesMicroRNA in disease regulation

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F-Actin Cytoskeleton Network Self-Organization Through Competition and Cooperation

Kadzik, R. S., Homa, K. E., & Kovar, D. R. (2020) · Annual Review of Cell and Developmental Biology

Cellular Mechanics and InteractionsMicrotubule and mitosis dynamics

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Quinone reductase (NQO1), a sensitive redox indicator, is increased in Alzheimer’s disease

Raina, A. K., Templeton, D. J., deak, J. C., Perry, G., & Smith, M. A. (1999) · Redox Report

Redox biology and oxidative stressAlzheimer's disease research and treatments

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Crystal structure of the eIF4A–PDCD4 complex

Chang, J. H., Cho, Y. H., Sohn, S. Y., Choi, J. M., Kim, A., Kim, Y. C., Jang, S. K., & Cho, Y. (2009) · Proceedings of the National Academy of Sciences

RNA and protein synthesis mechanismsRNA Research and Splicing

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A critical period for nicotine-induced disruption of synaptic development in rat auditory cortex

Aramakis, V. B., Hsieh, C. Y., Leslie, F. M., & Metherate, R. (2000) · The Journal of Neuroscience

Nicotinic Acetylcholine Receptors StudyNeuroscience and Neuropharmacology Research

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Nongenomic glucocorticoid receptor action regulates gap junction intercellular communication and neural progenitor cell proliferation

Samarasinghe, R. A., Di Maio, R., Volonte, D., Galbiati, F., Lewis, M., Romero, G., & DeFranco, D. B. (2011) · Proceedings of the National Academy of Sciences

Connexins and lens biologyCaveolin-1 and cellular processes

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The Caenorhabditis elegans gene lin-44 controls the polarity of asymmetric cell divisions

Herman, M. A., & Horvitz, H. R. (1994) · Development

Developmental Biology and Gene RegulationCellular Mechanics and Interactions

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(S)-(−)-cotinine, the major brain metabolite of nicotine, stimulates nicotinic receptors to evoke [3H]dopamine release from rat striatal slices in a calcium-dependent manner

Dwoskin, L. P., Teng, L., Buxton, S. T., & Crooks, P. A. (1999) · The Journal of Pharmacology and Experimental Therapeutics

Nicotinic Acetylcholine Receptors StudySmoking Behavior and Cessation

Cited by 120

Trimethylamine N-oxide prime NLRP3 inflammasome via inhibiting ATG16L1-induced autophagy in colonic epithelial cells

Yue, C., Yang, X., Li, J., Chen, X., Zhao, X., Chen, Y., & Wen, Y. (2017) · Biochemical and Biophysical Research Communications

Inflammasome and immune disordersInflammatory Bowel Disease

Cited by 120

Adolescent nicotine induces persisting changes in development of neural connectivity.

Smith, R. F., McDonald, C. G., Bergstrom, H. C., Ehlinger, D. G., & Brielmaier, J. M. (2015) · Neuroscience & Biobehavioral Reviews

Nicotinic Acetylcholine Receptors StudyNeuroscience and Neuropharmacology Research

Cited by 120

Human Vascular Tissue Models Formed from Human Induced Pluripotent Stem Cell Derived Endothelial Cells

Belair, D. G., Whisler, J. A., Valdez, J., Velazquez, J., Molenda, J. A., Vickerman, V., Lewis, R., Daigh, C., Hansen, T. D., Mann, D. A., et al. (2015) · Stem Cell Reviews and Reports

Angiogenesis and VEGF in CancerPluripotent Stem Cells Research

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Stochastic expression of a multiple antibiotic resistance activator confers transient resistance in single cells

El Meouche, I., Siu, Y., & Dunlop, M. J. (2016) · Scientific Reports

Bacterial Genetics and BiotechnologyGene Regulatory Network Analysis

Cited by 120