Cited by 24Immunodeficiency and Autoimmune DisordersBlood disorders and treatmentsNeutrophil, Myeloperoxidase and Oxidative Mechanisms

HEM1 Actin Immunodysregulatory Disorder: Genotypes, Phenotypes, and Future Directions

Open access
Cook, Sarah, Lenardo, Michael J., Freeman, Alexandra F.·2022·Journal of Clinical Immunology

Abstract

Cells of the innate and adaptive immune systems depend on proper actin dynamics to control cell behavior for effective immune responses. Dysregulated actin networks are known to play a pathogenic role in an increasing number of inborn errors of immunity. The WAVE regulatory complex (WRC) mediates branched actin polymerization, a process required for key cellular functions including migration, phagocytosis, vesicular transport, and immune synapse formation. Recent reports of pathogenic variants in NCKAP1L, a hematopoietically restricted gene encoding the HEM1 protein component of the WRC, defined a novel disease involving recurrent bacterial and viral infections, autoimmunity, and excessive inflammation (OMIM 141180). This review summarizes the diverse clinical presentations and immunological phenotypes observed in HEM1-deficient patients. In addition, we integrate the pathophysiological mechanisms described in current literature and highlight the outstanding questions for diagnosis and management of the HEM1 actin immunodysregulatory disorder.

AI snapshot

Written from the paper’s full text.

TL;DR

HEM1 deficiency is an autosomal recessive inborn error of immunity caused by pathogenic variants in NCKAP1L, which destabilize or impair the WAVE regulatory complex and produce recurrent infections, autoimmunity, hyperinflammation, and atopy. This review synthesizes nine reported patients from seven kindreds and outlines proposed mechanisms, diagnostic considerations, and unresolved therapeutic questions.

Key findings

  • HEM1 deficiency has been reported in nine individuals from seven kindreds, with autosomal recessive inheritance and biallelic missense, compound heterozygous, or splice-site variants in NCKAP1L; the gnomAD observed-to-expected ratio for loss-of-function variants was 0.20 (90% CI 0.13–0.33), suggesting selection against HEM1 loss of function.
  • Recurrent infections occurred in 9/9 patients; other common features included splenomegaly in 7/9, hepatomegaly in 6/9, atopic disease in 5/9, poor antibody response to vaccination or infection in 6/9, increased total B cells in 6/9, low naïve CD4 T cells in 6/9, and HLH in 3/9.
  • Proposed mechanisms include impaired innate immune cell migration and phagocytosis, defective T and B cell immune synapse activation, weaker BCR signaling that may permit autoreactive B cell survival, and reduced cortical actin barrier integrity leading to cytotoxic cytokine hypersecretion.
  • mTORC2 signaling appears diminished in HEM1-deficient patient cells, but mouse models show paradoxical WRC–mTOR interactions, leaving the exact crosstalk and therapeutic role of mTOR inhibitors unresolved.

Methods

  • Narrative review summarizing published clinical, genetic, immunological, and mechanistic literature on HEM1 deficiency.
  • Data include reports of nine patients from seven kindreds, variant data from gnomAD and the Exome Variant Server, immunophenotyping and serologic findings, and findings from HEM1-deficient mouse models.
  • Main analysis is qualitative synthesis of genotype–phenotype relationships, proposed pathogenic mechanisms, diagnostic approaches, and therapeutic perspectives.

Limitations

  • Stated in the paper: the limited number of reported cases means proper therapy is still being defined, and no data are currently available for outcomes of hematopoietic stem cell transplant in HEM1-deficient patients.
  • Stated in the paper: clinical heterogeneity at presentation complicates diagnosis, and investigations of immune cell population skewing were hampered by immunosuppressive medications.
  • Evident from the text: as a narrative review, it does not describe a systematic search strategy or meta-analysis, and its conclusions rely on a very small patient cohort plus mouse-model data.

Model-written summary. Check it against the paper before relying on it.

Integrity signals

Registry

Crossref · 10.1007/s10875-022-01327-0

Cites

53 of 53 references verified0 citation errors · 0 not checkable

Statistics

Nothing to recompute.

Claims the paper makes

149 of 167 cited sources checked · 30 supported · 5 flagged · accuracy not yet measured

  • Findingcitation

    Most HEM1-deficient patients (six out of nine) displayed increased total B cells.

    “Most patients (six out of nine) displayed increased total B cells [8–10].”
    Quote in the paperNot a substantial claim3 of 3 sources checked
    • cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source

      The passage describing the patient cohort (section labeled Abstract; page unavailable) reports five HEM1-deficient patients and poor antibody responses, but does not give total B-cell counts. Searches for increased total B cells and for “B cells” found no passage supporting the six-of-nine figure. Because the sentence cites multiple sources, this does not establish where that figure came from. (LLM, conf=0.74)

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    • cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source

      In Results, ‘Aberrant B-cell phenotype in HEM1 deficiency’ (page unavailable), the paper reports that patients’ absolute CD19+ B-cell counts were within the age-matched normal range. It reports increases in particular B-cell subsets, not total B cells, and does not report six of nine patients with increased total B cells. (LLM, conf=0.87)

      Checked by a reasoning model — may be wrong.

      Experimental — accuracy not yet measured
    • cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source

      Table 1 in the Clinical phenotype section shows an elevated CD19+ B-cell count for patient 1 at one measurement, while the other reported counts are within their stated normal ranges. The paper reports two patients, not nine, and does not establish that six of nine had increased total B cells. (LLM, conf=0.88)

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  • Interpretationcitation

    During B cell development and BCR editing, defective actin polymerization at immune synapses results in weaker signals, allowing for survival of autoreactive B cells with inherently stronger signals.

    “During B cell development and BCR editing, defective actin polymerization at immune synapses results in weaker signals, allowing for survival of autoreactive B cells with inherently stronger signals [9, 39, 40].”
    Quote in the paperSubstantial claim3 of 3 sources checked
    • cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source

      The Discussion says HEM1-deficient B cells form less effective immune synapses and receive weaker signals. It proposes that stronger signals from autoreactive antigens may then favor autoreactive B-cell survival, but explicitly calls this a hypothesis; the citing sentence presents that mechanism as an established result. The paper discusses receptor adaptation during germinal-center maturation, rather than directly demonstrating the mechanism during BCR editing. (LLM, conf=0.88)

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    • cites [39] Kolhatkar NS, Brahmandam A, Thouvenel CD, Becker-Herman S, Jacobs HM, Schwartz MA, et al. Altered BCR and TLR signals promote enhanced positive selection of autoreactive transitional B cells in Wiskott-Aldrich syndrome. J Exp Med. 2015;212(10):1663–77. source

      The Discussion (page unavailable) says WASp deficiency promotes rather than weakens BCR signaling and favors positive selection of low-affinity autoreactive transitional B cells. The Results section on negative selection (page unavailable) reports essentially identical receptor-editing measurements in deficient and control cells. These findings contradict the proposed weaker-signal, altered-editing mechanism; the cited passages do not establish the immune-synapse mechanism. (LLM, conf=0.90)

      Checked by a reasoning model — may be wrong.

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    • cites [40] Li J, Yin W, Jing Y, Kang D, Yang L, Cheng J, et al. The coordination between B cell receptor signaling and the actin cytoskeleton during B cell activation. Front Immunol. 2018;9:3096. source

      The sections on immune-synapse formation and B-cell morphology say actin-dependent spreading promotes BCR microclusters and amplifies signaling. But the paper does not link defective actin polymerization to survival of autoreactive B cells during development or receptor editing; its section on actin polymerization also reports increased BCR signaling in WASP-deficient B cells. No page numbers are available in our copy. (LLM, conf=0.83)

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  • Findingcitation

    Impaired specific antibody production after vaccinations or EBV infection was observed in six HEM1-deficient patients.

    “Impaired specific antibody production after vaccinations or EBV infection was observed in six patients [8, 10].”
    Quote in the paperNot a substantial claim2 of 2 sources checked
    • cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source

      The patient-description passage (section labeled Abstract; page unavailable) reports poor specific antibody responses in five HEM1-deficient patients, supporting the core finding. It does not specify whether those responses followed vaccination or EBV infection, and it reports five patients rather than six. (LLM, conf=0.90)

      Experimental — accuracy not yet measured
    • cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source

      The Clinical phenotype section (Table 1; page unavailable) reports protective tetanus antibody titers for both patients studied. The same section reports that both patients were EBV-IgG seropositive. These findings contradict the attributed claim of impaired vaccine- or EBV-specific antibody production in six patients; this paper describes two patients, not six. (LLM, conf=0.85)

      Checked by a reasoning model — may be wrong.

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  • Premisecitation

    Cells of the innate and adaptive immune systems depend on proper actin dynamics to control effective immune responses.

    “Cells of the innate and adaptive immune systems depend on proper actin dynamics to control effective responses, which is highlighted by inborn errors of immunity (IEI) affecting actin networks, known as actinopathies (reviewed in [3–7]).”
    Quote in the paperSubstantial claim5 of 5 sources checked
    • cites [3] Papa R, Penco F, Volpi S, Gattorno M. Actin remodeling defects leading to autoinflammation and immune dysregulation. Front Immunol. 2020;11:604206. source
    • cites [4] Sprenkeler EGG, Webbers SDS, Kuijpers TW. When actin is not actin’ like it should: a new category of distinct primary immunodeficiency disorders. J Innate Immun. 2021;13(1):3–25. source
    • cites [5] Chan AY, Torgerson TR. Primary immune regulatory disorders: a growing universe of immune dysregulation. Curr Opin Allergy Clin Immunol. 2020;20(6):582–90. source
    • cites [6] Tangye SG, Al-Herz W, Bousfiha A, Cunningham-Rundles C, Franco JL, Holland SM, et al. The ever-increasing array of novel inborn errors of immunity: an interim update by the IUIS committee. J Clin Immunol. 2021;41(3):666–79. source
    • cites [7] Kamnev A, Lacouture C, Fusaro M, Dupré L. Molecular tuning of actin dynamics in leukocyte migration as revealed by immune-related actinopathies. Front Immunol. 2021;12:750537. source
  • Findingcitation

    HEM1-deficient patients with severe autoimmune features display reduced proportions of naïve CD4+ and CD8+ T cell populations.

    “Patients with severe autoimmune features display reduced proportions of naïve CD4+ and CD8+ T cell populations [8–10].”
    Quote in the paperNot a substantial claim3 of 3 sources checked
    • cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source

      The patient-description passage (labeled Abstract; page unavailable) reports autoimmune manifestations in some HEM1-deficient patients, but does not give proportions of naïve CD4+ or CD8+ T cells. Searches for naïve T-cell subsets and CD45RA found no passage in our copy establishing the claimed reduction. (LLM, conf=0.73)

      Experimental — accuracy not yet measured
    • cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source

      The Results section, “Impaired T-cell function in HEM1 deficiency” (page unavailable), reports elevated relative percentages of memory T-cell subsets in HEM1-deficient patients, while the Discussion identifies P1 as having severe SLE-like autoimmunity. Our copy does not state that the proportions of naïve CD4+ and naïve CD8+ T cells were reduced; an increase in memory subsets alone does not establish both specific reductions. (LLM, conf=0.78)

      Experimental — accuracy not yet measured
    • cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source

      Table 1 (Clinical phenotype; page not provided) shows markedly reduced proportions of naïve CD4+ and CD8+ T cells in both NCKAP1L/HEM1-deficient patients compared with reference ranges. The Clinical phenotype and Immunological phenotype sections report a high antinuclear-antibody titer in one patient, but do not establish severe autoimmune features in both patients, so that qualifier is not supported by this source. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
  • May combine two claims. 27
  • Classified as probably not a substantial claim. 21
  • The quote only partly states this claim. 1
  • May combine two claims.

    Premisecitation

    HEM1 deficiency was first described in 2019 and has been reported in nine individuals from seven kindreds.

    “HEM1 deficiency was first described in 2019 and has been reported in nine individuals from seven kindreds [8–10, 25].”
    Quote in the paperNot a substantial claim4 of 4 sources checked
    • cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source

      Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

      Experimental — accuracy not yet measured
    • cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source

      Split into 2 atoms — 0 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 1 unverifiable. Expand the claim to see per-atom verdicts.

      Experimental — accuracy not yet measured
    • cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source

      Split into 2 atoms — 0 confirmed, 1 partially supported, 1 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

      Checked by a reasoning model — may be wrong.

      Experimental — accuracy not yet measured
    • cites [25] Comrie WA, Poli MC, Cook SA, Similuk M, Oler AJ, Fauqi AJ, et al. Genetic immunodeficiency and autoimmune disease reveal distinct roles of Hem1 in the WAVE2 and mTORC2 complexes. bioRxiv. 2019. source

      Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

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  • May combine two claims.

    Premisecitation

    Prolonged pathogen exposure resulting from impaired adaptive immune cell activation contributes to chronic inflammation and HLH development, potentially explaining the HLH-like phenotypes observed in patients.

    “Prolonged pathogen exposure resulting from impaired adaptive immune cell activation is known to contribute to chronic inflammation and HLH development, potentially explaining the HLH-like phenotypes observed in patients [28, 42].”
    Quote in the paperSubstantial claim1 of 2 sources checked
    • cites [28] Brisse E, Wouters CH, Matthys P. Advances in the pathogenesis of primary and secondary haemophagocytic lymphohistiocytosis: differences and similarities. Br J Haematol. 2016;174(2):203–17. source
    • cites [42] Henter JI, Elinder G, Söder O, Hansson M, Andersson B, Andersson U. Hypercytokinemia in familial hemophagocytic lymphohistiocytosis. Blood. 1991;78(11):2918–22. source

      The Discussion (page not supplied) describes active familial HLH as a prominent noninfectious inflammatory reaction and reports prominent T-lymphocyte activation, contrary to the proposed mechanism of prolonged pathogen exposure caused by impaired adaptive immune-cell activation. It instead suggests that prolonged cytokine production may contribute to disease, while stating that the etiology remains unknown. (LLM, conf=0.84)

      Checked by a reasoning model — may be wrong.

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    None of the reported NCKAP1L variants is present in the Exome Variant Server and only two variants (c.1076C > T [p.P359L] and c.1111A > G [p.M371V]) are observed in gnomAD, though there are no healthy homozygotes.

    “None of the variants is present in the Exome Variant Server and only two variants (c.1076C > T [p.P359L] and c.1111A > G [p.M371V]) are observed in gnomAD, though there are no healthy homozygotes [26].”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [26] Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, et al. The mutational constraint spectrum quantified from variation in 141,456 humans. Nature. 2020;581(7809):434–43. source

      The ‘A high-quality catalogue of variation’ section identifies the gnomAD dataset, but the passages found do not report NCKAP1L variants or their genotype counts. Searches for the two variant names, the Exome Variant Server, and healthy homozygotes found no passage addressing the sentence’s specific claims. (LLM, conf=0.78)

      Experimental — accuracy not yet measured
  • Classified as probably not a substantial claim.

    Premisecitation

    Dynamic control of actin polymerization is crucial for cellular migration, adhesion, division, membrane transport, and spatiotemporal coordination of signals that govern metabolism and proliferation.

    “Dynamic control of actin polymerization is crucial for cellular migration, adhesion, division, membrane transport, and spatiotemporal coordination of signals that govern metabolism and proliferation [1, 2].”
    Quote in the paperSubstantial claim1 of 2 sources checked
    • cites [1] Chen B, Brinkmann K, Chen Z, Pak CW, Liao Y, Shi S, et al. The WAVE regulatory complex links diverse receptors to the actin cytoskeleton. Cell. 2014;156(1–2):195–207. source

      The Introduction (page unavailable) says dynamic actin rearrangements are vital to eukaryotic cells and identifies adhesion, migration, and division among the processes involving WAVE proteins. The passages do not establish the claim’s additional links to membrane transport or to spatiotemporal coordination of signals governing metabolism and proliferation. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
    • cites [2] Stradal TE, Rottner K, Disanza A, Confalonieri S, Innocenti M, Scita G. Regulation of actin dynamics by WASP and WAVE family proteins. Trends Cell Biol. 2004;14(6):303–11. source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Branched actin is critical for morphological changes during phagocytosis.

    “Additionally, branched actin is critical for morphological changes during phagocytosis (Fig. 1d) [20].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [20] Rougerie P, Miskolci V, Cox D. Generation of membrane structures during phagocytosis and chemotaxis of macrophages: role and regulation of the actin cytoskeleton. Immunol Rev. 2013;256(1):222–39. source
  • May combine two claims.

    Premisecitation

    HEM1 expression is restricted to hematopoietic cells and HEM2 is expressed in all other tissues.

    “HEM1 expression is restricted to hematopoietic cells and its counterpart, HEM2, is expressed in all other tissues [16].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [16] Rottner K, Stradal TEB, Chen B. WAVE regulatory complex. Curr Biol. 2021;31(10):R512–7. source

      In “Biological/organismic functions” (page unavailable), the paper describes Hem1 as tissue-specific to hematopoietic cells and Nap1 as ubiquitously expressed. “Composition and assembly” identifies Nap1 as Hem2. This supports the broad expression contrast, but not the claim that Hem2 is expressed only in tissues other than hematopoietic cells; ubiquitous expression does not imply that exclusion. (LLM, conf=0.86)

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  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    Tensile force generated by polarized F-actin polymerization allows for integrin activation and focal adhesion maturation, both of which are necessary for cellular adhesion and migration through extracellular matrices.

    “Tensile force generated by polarized F-actin polymerization allows for integrin activation and focal adhesion maturation, both of which are necessary for cellular adhesion and migration through extracellular matrices (Fig. 1b) [18, 19].”
    Quote in the paperNot a substantial claim2 of 2 sources checked
    • cites [18] Case LB, Waterman CM. Integration of actin dynamics and cell adhesion by a three-dimensional, mechanosensitive molecular clutch. Nat Cell Biol. 2015;17(8):955–63. source

      In “The actin cytoskeleton is a master regulator of FAs” (page not given), the paper links actin flow to local integrin activation and says focal-adhesion maturation requires tension. It does not establish that polarized F-actin polymerization is the sole source of that tension: it also names myosin contractility and extracellular pulling. Its discussion of migration describes other mechanisms, so the claim that integrin activation and focal-adhesion maturation are necessary for migration through extracellular matrices is too broad. (LLM, conf=0.87)

      Experimental — accuracy not yet measured
    • cites [19] Comrie WA, Babich A, Burkhardt JK. F-actin flow drives affinity maturation and spatial organization of LFA-1 at the immunological synapse. J Cell Biol. 2015;208(4):475–91. source

      The Introduction and Discussion report that force from centripetal F-actin flow promotes LFA-1 activation and T cell–APC adhesion at the immunological synapse. The paper does not establish that this force drives focal adhesion maturation or that those processes are necessary for migration through extracellular matrices. No page numbers are available in our copy. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Findingcitation

    HEM1-deficient patients may have systemic lupus erythematosus-like disease with positive anti-nuclear antibodies and double-stranded DNA autoantibodies, and associated immune complex glomerulonephritis.

    “Patients may have systemic lupus erythematosus–like disease with positive anti-nuclear antibodies (ANA) and double-stranded (ds) DNA autoantibodies, and associated immune complex glomerulonephritis [8–10].”
    Quote in the paperNot a substantial claim3 of 3 sources checked
    • cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source

      The patient-description passage (indexed as Abstract; page unavailable) reports autoimmune manifestations in HEM1-deficient patients. It does not identify lupus-like disease, positive ANA or anti-dsDNA antibodies, or immune-complex glomerulonephritis; searches for those specific features found no supporting passage in our copy. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
    • cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source

      In Results (Identification of human HEM1 deficiency; page unavailable), the paper reports that one HEM1-deficient patient had glomerulonephritis, tested positive for anti-dsDNA antibodies, and was diagnosed with SLE. It does not report a positive ANA test or establish that this patient's glomerulonephritis was immune-complex mediated; the explicit immune-complex glomerulonephritis finding in Results concerns Hem1-deficient mice, not patients. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
    • cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source

      The Clinical phenotype section reports a high antinuclear antibody titer in patient 1, and the Immunological phenotype section describes a B-cell finding associated with lupus. However, the Clinical phenotype table records anti-dsDNA antibodies as negative in both patients, and the passages do not report immune-complex glomerulonephritis. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    ARP2/3-mediated actin polymerization drives cell spreading at immunological synapses and shapes the complex architectures that enable efficient antigen presentation and lymphocyte activation.

    “ARP2/3-mediated actin polymerization drives cell spreading at immunological synapses and shapes the complex architectures that enable efficient antigen presentation and lymphocyte activation (Fig. 1e) [12, 22, 23].”
    Quote in the paperNot a substantial claim3 of 3 sources checked
    • cites [12] Ritter AT, Kapnick SM, Murugesan S, Schwartzberg PL, Griffiths GM, Lippincott-Schwartz J. Cortical actin recovery at the immunological synapse leads to termination of lytic granule secretion in cytotoxic T lymphocytes. Proc Natl Acad Sci U S A. 2017;114(32):E6585–94. source

      The Results section (page not available) describes a ring-like actin structure at the cytotoxic T-cell synapse, supporting a role for actin dynamics in synapse architecture. But the paper does not establish that ARP2/3-mediated polymerization drives cell spreading or that these structures enable efficient antigen presentation and lymphocyte activation. (LLM, conf=0.79)

      Experimental — accuracy not yet measured
    • cites [22] Dupré L, Boztug K, Pfajfer L. Actin dynamics at the T cell synapse as revealed by immune-related actinopathies. Front Cell Dev Biol. 2021;9:665519. source

      The section on cellular-scale synapse control says actin polymerization sustains T-cell spreading over an antigen-presenting cell. The section on ARPC1B deficiency links Arp2/3 to lamellipodial architecture, synapse assembly, and T-cell function. These passages support the spreading, architecture, and lymphocyte-activation aspects, but do not establish that Arp2/3-mediated T-cell actin dynamics makes antigen presentation itself more efficient. (LLM, conf=0.84)

      Experimental — accuracy not yet measured
    • cites [23] Hammer JA, Wang JC, Saeed M, Pedrosa AT. Origin, organization, dynamics, and function of actin and actomyosin networks at the T cell immunological synapse. Annu Rev Immunol. 2019;37:201–24. source

      The dSMAC section (page unavailable) says Arp2/3 creates a branched actin network that drives T-cell spreading at the immunological synapse. The TCR microcluster signaling section (page unavailable) links that network’s flow to T-cell signaling. The paper does not establish the further claim that these architectures enable efficient antigen presentation; its account focuses on the T-cell side of the synapse. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    Pathogenic variants in NCKAP1L, a hematopoietically restricted gene encoding the HEM1 protein component of the WRC, define a novel disease involving recurrent bacterial and viral infections, autoimmunity, and excessive inflammation (OMIM 141180).

    “Recently, three reports investigating novel mutations in NCKAP1L, a hematopoietically restricted gene encoding the HEM1 protein component of the WAVE regulatory complex (WRC), established how improper actin networks lead to a clinical syndrome involving recurrent bacterial and viral infections and autoimmunity (OMIM 141180) [8–10].”
    Quote in the paperSubstantial claim3 of 3 sources checked
    • cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
    • cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source

      Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

      Experimental — accuracy not yet measured
    • cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source

      Split into 2 atoms — 1 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Findingcitation

    Autoimmune thrombocytopenia in one HEM1-deficient patient occurred after measles, mumps, and rubella vaccination.

    “Autoimmune thrombocytopenia in one patient occurred after measles, mumps, and rubella vaccination [8].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source

      The patient-description passage (section labeled Abstract; page unavailable) mentions autoimmune manifestations among the HEM1-deficient patients, but does not identify thrombocytopenia or a vaccination preceding it. Searches for thrombocytopenia and for measles, mumps, and rubella vaccination found no passage addressing the reported event. (LLM, conf=0.72)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    Upon cellular stimulation, the WRC is recruited to the plasma membrane to communicate with central signaling molecules including PI3K, MAPK, FAK, AKT, and PKC; these effectors govern activation, growth, proliferation, and survival.

    “Upon cellular stimulation, the WRC is recruited to the plasma membrane to communicate with central signaling molecules including phosphatidylinositol-3 kinases (PI3K), mitogen-activated protein kinases (MAPK), focal adhesion kinase (FAK), protein kinase B/AKT, and protein kinase C. These effectors subsequently govern activation, growth, proliferation, and survival [16, 24].”
    Quote in the paperNot a substantial claim1 of 2 sources checked
    • cites [16] Rottner K, Stradal TEB, Chen B. WAVE regulatory complex. Curr Biol. 2021;31(10):R512–7. source

      The Regulation mechanisms section (page unavailable) says the WRC moves to the plasma membrane during activation and interacts with signaling ligands. It does not identify PI3K, MAPK, FAK, AKT, and PKC as WRC partners or say that these effectors subsequently govern activation, growth, proliferation, and survival. Its mention of PIP3 does not establish an interaction with PI3K. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
    • cites [24] Moujaber O, Stochaj U. The cytoskeleton as regulator of cell signaling pathways. Trends Biochem Sci. 2020;45(2):96–107. source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Findingcitation

    Failure to thrive was noted in two HEM1-deficient patients.

    “Failure to thrive was noted in two patients [8, 9].”
    Quote in the paperNot a substantial claim2 of 2 sources checked
    • cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source

      The patient-description passage in our copy (labeled Abstract; page unavailable) identifies five HEM1-deficient patients and lists infections, atopy, and inflammatory manifestations, but does not mention failure to thrive. Searches for “failure to thrive,” poor growth, weight gain, and growth retardation found no passage establishing that two patients had this finding. (LLM, conf=0.72)

      Experimental — accuracy not yet measured
    • cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source

      In Results, “Identification of human HEM1 deficiency” (page unavailable), the paper reports failure to thrive in patient P1, with height and weight below the third percentile. It describes a second HEM1-deficient patient, P2, but does not report failure to thrive for her. This source therefore supports one patient, not two. (LLM, conf=0.90)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    The p.M371V substitution drastically reduced WRC activation by the upstream GTPase ARF1, thus impairing WRC function without destabilizing the complex.

    “By contrast, the p.M371V substitution drastically reduced WRC activation by the upstream GTPase ARF1, thus impairing WRC function without destabilizing the complex [8].”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Findingcitation

    One HEM1-deficient patient has been described with lymphadenitis after Bacillus Calmette-Guerin vaccination, but this occurred after initiation of steroids.

    “One patient has been described with lymphadenitis after Bacillus Calmette-Guerin vaccination, but this occurred after initiation of steroids [10].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
  • May combine two claims.

    Findingcitation

    Naïve CD8+ T cell populations were low in HEM1-deficient patients, and no consistent pattern has been observed with CD8+ memory cells.

    “Naïve CD8+ T cell populations were low, and no consistent pattern has been observed with CD8+ memory cells [8–10].”
    Quote in the paperNot a substantial claim3 of 3 sources checked
    • cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source

      The available patient T-cell passage (labeled Abstract; page unavailable) discusses activation, proliferation, and CD8+ cytotoxicity, but not naïve or memory CD8+ cell counts. Searches for naïve CD8+ cells, memory CD8+ cells, and lymphocyte-subset markers found no passage addressing either claimed pattern. (LLM, conf=0.72)

      Experimental — accuracy not yet measured
    • cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source

      The Results section ('Impaired T-cell function in HEM1 deficiency'; page unavailable) reports normal total CD8+ T-cell numbers and elevated relative percentages of central memory and exhausted effector memory cells. It does not state whether naïve CD8+ cells were low or describe a pattern specifically for CD8+ memory cells. Searches for naïve CD8+ cells and CD8+ memory-cell patterns found no passage settling either point. (LLM, conf=0.70)

      Experimental — accuracy not yet measured
    • cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source

      In the Clinical phenotype table (Table 1), naïve CD8+ T-cell percentages are low in both patients relative to their reference ranges. But the Immunological phenotype section reports increased percentages of CD8+ memory subsets, rather than concluding that CD8+ memory cells show no consistent pattern; the table does show variation between patients for central and effector memory subsets. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    A dense ring of branched actin surrounds the cytosol, creating a barrier at the cell cortex that regulates vesicle secretion.

    “Additionally, a dense ring of branched actin surrounds the cytosol, creating a barrier at the cell cortex that regulates vesicle secretion [11–13].”
    Quote in the paperNot a substantial claim3 of 3 sources checked
    • cites [11] Porat-Shliom N, Milberg O, Masedunskas A, Weigert R. Multiple roles for the actin cytoskeleton during regulated exocytosis. Cell Mol Life Sci. 2013;70(12):2099–121. source

      The 'Anchoring site for the secretory vesicles and barrier function' section (page unavailable) describes cortical actin as a thick meshwork that can act as a barrier between secretory vesicles and the plasma membrane. It does not describe that meshwork as branched or as a ring surrounding the cytosol; the actin ring it mentions is at an NK-cell immunological synapse and delimits an area of granule fusion. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
    • cites [12] Ritter AT, Kapnick SM, Murugesan S, Schwartzberg PL, Griffiths GM, Lippincott-Schwartz J. Cortical actin recovery at the immunological synapse leads to termination of lytic granule secretion in cytotoxic T lymphocytes. Proc Natl Acad Sci U S A. 2017;114(32):E6585–94. source

      The introductory passage (page unavailable) describes a dense cortical actin meshwork that envelops the cytosol, and the Discussion says recovered cortical actin acts as a barrier to lytic granule secretion in cytotoxic T lymphocytes. Our copy does not establish that this actin is branched; it describes a meshwork rather than a ring. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
    • cites [13] Wollman R, Meyer T. Coordinated oscillations in cortical actin and Ca2+ correlate with cycles of vesicle secretion. Nat Cell Biol. 2012;14(12):1261–9. source

      The Abstract describes a peripheral actin cortex that acts as a mechanical barrier to secretory vesicles, and the Results show that changing cortical actin affects secretion. Our copy does not describe it as a dense ring of branched actin surrounding the cytosol, so those structural details are unsupported. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    The HEM1/2 and CYFIP1/2 subunits of the WRC are structurally homologous and form a heterodimer with a flat, polybasic surface that facilitates plasma membrane association.

    “The HEM1/2 and CYFIP1/2 subunits of the WRC are structurally homologous and form a heterodimer with a flat, polybasic surface that facilitates plasma membrane association [1].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [1] Chen B, Brinkmann K, Chen Z, Pak CW, Liao Y, Shi S, et al. The WAVE regulatory complex links diverse receptors to the actin cytoskeleton. Cell. 2014;156(1–2):195–207. source

      The Introduction (page unavailable) identifies HEM1/2 as Nap1 variants and CYFIP1/2 as Sra1 variants, and describes Sra1 and Nap1 as homologous proteins that form a dimer. The passages found do not describe that dimer as having a flat, polybasic surface that facilitates plasma membrane association; the Results instead show membrane recruitment through receptor interactions. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Interpretationcitation

    Interstitial lung disease is described in HEM1-deficient patients without a clear etiology but may be related to viral infections or chronic inflammation.

    “Interstitial lung disease is also described without a clear etiology but may be related to viral infections or chronic inflammation [8, 27].”
    Quote in the paperNot a substantial claim2 of 2 sources checked
    • cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source

      The passage describing the five patients (section labeled Abstract; page unavailable) reports respiratory infections, pneumonia, bronchiectasis, and inflammatory disease, but does not describe interstitial lung disease. Searches for interstitial lung disease and for a viral or inflammatory etiology found no passage linking either proposed cause to that condition. (LLM, conf=0.73)

      Experimental — accuracy not yet measured
    • cites [27] Azadeh N, Limper AH, Carmona EM, Ryu JH. The role of infection in interstitial lung diseases: a review. Chest. 2017;152(4):842–52. source

      The Abstract (page unavailable) says some ILDs have unknown causes and that infection may play a role; the Idiopathic Pulmonary Fibrosis > Viruses section (page unavailable) discusses possible viral contributions. The paper does not describe ILD in HEM1-deficient patients, and its description of chronic inflammation as a feature of NSIP does not establish it as a cause in those patients. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Disruption of CYFIP2 and its interaction with FMRP causes a neurodevelopmental disorder characterized by intellectual disability and seizures.

    “Disruption of CYFIP2 and its interaction with Fragile X Mental Retardation Protein (FMRP) is known to cause a neurodevelopmental disorder characterized by intellectual disability and seizures [49].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [49] Begemann A, Sticht H, Begtrup A, Vitobello A, Faivre L, Banka S, et al. New insights into the clinical and molecular spectrum of the novel CYFIP2-related neurodevelopmental disorder and impairment of the WRC-mediated actin dynamics. Genet Med. 2021;23(3):543–54. source

      The Introduction and Discussion link disease-associated CYFIP2 variants to a neurodevelopmental disorder involving intellectual disability and seizures. The Discussion says the variants disturb WRC-mediated actin regulation, but explicitly states that their effect on the CYFIP2–FMRP interaction has not been studied. The claimed disruption of that interaction as a cause is therefore unsupported. (LLM, conf=0.91)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Interpretationcitation

    HEM1-deficient T cells fail to properly integrate antigen signals and fully activate because T cell immune synapses are highly dependent on ARP2/3-mediated F-actin polymerization.

    “Because T cell immune synapses are highly dependent on ARP2/3-mediated F-actin polymerization [12, 22, 23, 37], HEM1-deficient T cells fail to properly integrate antigen signals and fully activate.”
    Quote in the paperSubstantial claim3 of 4 sources checked
    • cites [12] Ritter AT, Kapnick SM, Murugesan S, Schwartzberg PL, Griffiths GM, Lippincott-Schwartz J. Cortical actin recovery at the immunological synapse leads to termination of lytic granule secretion in cytotoxic T lymphocytes. Proc Natl Acad Sci U S A. 2017;114(32):E6585–94. source

      The Discussion (page unavailable in our copy) links actin dynamics at cytotoxic T-cell synapses to TCR signaling and lytic-granule secretion, supporting the general importance of actin at the synapse. It does not identify ARP2/3-mediated F-actin polymerization as the mechanism on which synapses depend. The HEM1-deficiency conclusion follows the citations and is the citing authors’ inference, not a finding attributed to this source. (LLM, conf=0.84)

      Experimental — accuracy not yet measured
    • cites [22] Dupré L, Boztug K, Pfajfer L. Actin dynamics at the T cell synapse as revealed by immune-related actinopathies. Front Cell Dev Biol. 2021;9:665519. source
    • cites [23] Hammer JA, Wang JC, Saeed M, Pedrosa AT. Origin, organization, dynamics, and function of actin and actomyosin networks at the T cell immunological synapse. Annu Rev Immunol. 2019;37:201–24. source
    • cites [37] Nolz JC, Gomez TS, Zhu P, Li S, Medeiros RB, Shimizu Y, et al. The WAVE2 complex regulates actin cytoskeletal reorganization and CRAC-mediated calcium entry during T cell activation. Curr Biol. 2006;16(1):24–34. source
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    WAVE2 is directly modulated by LRRK2 in microglia, establishing a potentially pathogenic role in Parkinson disease.

    “Recently, WAVE2 was found to be directly modulated by leucine rich repeat kinase 2 (LRRK2) in microglia, establishing a potentially pathogenic role in development of Parkinson disease [50].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [50] Kim KS, Marcogliese PC, Yang J, Callaghan SM, Resende V, Abdel-Messih E, et al. Regulation of myeloid cell phagocytosis by LRRK2 via WAVE2 complex stabilization is altered in Parkinson’s disease. Proc Natl Acad Sci U S A. 2018;115(22):E5164–73. source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    mTORC2 modulates cell morphology via PKCα signaling.

    “It was initially shown that mTORC2 modulates cell morphology via PKCα signaling [43].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [43] Sarbassov DD, Ali SM, Kim DH, Guertin DA, Latek RR, Erdjument-Bromage H, et al. Rictor, a novel binding partner of mTOR, defines a rapamycin-insensitive and raptor-independent pathway that regulates the cytoskeleton. Curr Biol. 2004;14(14):1296–302. source
  • May combine two claims.

    Findingcitation

    One HEM1-deficient patient displayed selective IgA deficiency in the context of celiac disease while others displayed mildly elevated IgA levels.

    “One patient displayed selective IgA deficiency in the context of celiac disease while others displayed mildly elevated IgA levels [8, 10].”
    Quote in the paperNot a substantial claim2 of 2 sources checked
    • cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source

      The patient-description passage (section labeled Abstract; page unavailable) reports poor specific antibody responses and sometimes elevated IgE or IgG, but does not address IgA levels or celiac disease. Searches for selective IgA deficiency, elevated IgA, and celiac disease found no passage supporting the attributed patient-level claim. (LLM, conf=0.74)

      Experimental — accuracy not yet measured
    • cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source

      The Clinical phenotype section and Table 1 report elevated IgA in both NCKAP1L-deficient patients, supporting the elevated-IgA portion of the claim. They do not report selective IgA deficiency or celiac disease; the section describes patient 2’s IgA elevation as massive, not mild. (LLM, conf=0.90)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    HEM1-deficient T cells show reduced CD25 and CD69 upregulation and poor proliferative responses after TCR engagement in vitro.

    “This manifests as reduced CD25 and CD69 upregulation and poor proliferative responses in patient cells after TCR engagement in vitro [8, 9].”
    Quote in the paperSubstantial claim2 of 2 sources checked
    • cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
    • cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    An alternative NCKAP1L splice form is expressed in biliary epithelial cells and promotes intrahepatic biliary tree morphogenesis.

    “A recent report demonstrated expression of an alternative NCKAP1L splice form in biliary epithelial cells promotes intrahepatic biliary tree morphogenesis [51].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [51] Ghaffari K, Pierce LX, Roufaeil M, Gibson I, Tae K, Sahoo S, et al. NCK-associated protein 1 like (nckap1l) minor splice variant regulates intrahepatic biliary network morphogenesis. PLoS Genet. 2021;17(3):e1009402. source
  • May combine two claims.

    Premisecitation

    Numerous Hem1-deficient mouse models demonstrated systemic autoimmunity and inflammation parallel to that seen in patients, including splenomegaly, immune complex lupus glomerulonephritis, elevated proinflammatory markers (IL-6, IFNγ, and MRP8/14), and autoreactive plasmablasts with elevated serum dsDNA autoantibodies.

    “Numerous Hem1-deficient mouse models demonstrated systemic autoimmunity and inflammation parallel to that seen in patients, including splenomegaly, immune complex lupus glomerulonephritis, elevated proinflammatory markers (IL-6, IFNγ, and MRP8/14), and autoreactive plasmablasts with elevated serum dsDNA autoantibodies [9, 41].”
    Quote in the paperSubstantial claim1 of 2 sources checked
    • cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source

      Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

      Experimental — accuracy not yet measured
    • cites [41] Liu M, Zhang J, Pinder BD, Liu Q, Wang D, Yao H, et al. WAVE2 suppresses mTOR activation to maintain T cell homeostasis and prevent autoimmunity. Science. 2021;371(6536):eaaz4544. source
  • May combine two claims.

    Premisecitation

    Multiple investigations found elevated surface CD107a levels after CD8+ T cell degranulation and lower cortical actin thickness.

    “Multiple investigations found elevated surface CD107a levels after CD8 + T cell degranulation and lower cortical actin thickness”
    Quote in the paperSubstantial claim4 of 4 sources checked
    • cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source

      The passage on HEM1-deficient patient cells (section labeled Abstract; page unavailable) reports reduced cortical F-actin and higher surface CD107a on T cells, especially after induced degranulation. It does not specify that the CD107a finding was in CD8+ T cells or report a measurement of cortical actin thickness; it describes reduced F-actin instead. (LLM, conf=0.84)

      Experimental — accuracy not yet measured
    • cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source

      The Results and discussion section on T-cell activation reports that, after strong stimulation, cytotoxic T cells from two patients had normal or even increased surface CD107a—not uniformly elevated levels. The section on impaired actin polymerization describes abnormal synapse and leading-edge formation, but does not report reduced cortical actin thickness; it says basal F-actin content in resting T cells did not differ from controls. Page numbers are unavailable in our copy. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
    • cites [12] Ritter AT, Kapnick SM, Murugesan S, Schwartzberg PL, Griffiths GM, Lippincott-Schwartz J. Cortical actin recovery at the immunological synapse leads to termination of lytic granule secretion in cytotoxic T lymphocytes. Proc Natl Acad Sci U S A. 2017;114(32):E6585–94. source

      The paper’s ‘Cortical Actin Recovery Correlates with Lytic Granule Secretion’ section reports reduced cortical actin density before granule fusion, but says actin recovers after degranulation. It tracks secretion with LAMP1-EGFP rather than reporting elevated surface CD107a, and it does not measure actin thickness. The actin–secretion relationship is supported, but the marker, measurement, and implied post-degranulation timing are not. (LLM, conf=0.82)

      Experimental — accuracy not yet measured
    • cites [33] Chan MM, Wooden JM, Tsang M, Gilligan DM, Hirenallur-S DK, Finney GL, et al. Hematopoietic protein-1 regulates the actin membrane skeleton and membrane stability in murine erythrocytes. PLoS ONE. 2013;8(2):e54902. source

      The Results passage concerns actin-related protein changes in Hem1-deficient murine erythrocytes, not CD8+ T cells. Searches for CD107a, CD8+ T-cell degranulation, and cortical actin thickness found no passage addressing the claimed findings; the Discussion’s general statement about actin polymerization in immune cells does not establish them. (LLM, conf=0.76)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Findingcitation

    Autoimmunity and hyperinflammation are commonly observed in HEM1-deficient patients.

    “Autoimmunity and hyperinflammation are commonly observed in HEM1-deficient patients.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Premisenone given

    Branched actin networks are required for cell spreading and immune synapse formation, lamellipodia formation, endo- and exocytosis, and phagocytosis.

    “By contrast, branched actin networks are required for cell spreading and immune synapse formation, lamellipodia formation, endo- and exocytosis, and phagocytosis (Fig. 1).”
    Quote in the paperSubstantial claim
  • Classified as probably not a substantial claim.

    Premisenone given

    Branched actin is polymerized by the ARP2/3 complex after stimulation by the Wiskott-Aldrich Syndrome protein family of actin nucleation promoting factors, which includes the WAVE proteins.

    “Branched actin is polymerized by the ARP2/3 complex after stimulation by the Wiskott-Aldrich Syndrome protein (WASp) family of actin NPFs, which includes the WASp family verprolin homologous (WAVE) proteins.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Premisenone given

    These HEM1 amino acid substitutions destabilize the entire complex, causing subsequent degradation of all WRC subunits.

    “These HEM1 amino acid substitutions destabilize the entire complex, causing subsequent degradation of all WRC subunits.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    WAVE2 is ubiquitously expressed and is the predominant form in hematopoietic cell lineages, while WAVE1 and WAVE3 expression is limited to neural tissues.

    “WAVE2 is ubiquitously expressed and is the predominate form in hematopoietic cell lineages, while WAVE1 and WAVE3 expression is limited to neural tissues [15].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [15] Suetsugu S, Miki H, Takenawa T. Identification of two human WAVE/SCAR homologues as general actin regulatory molecules which associate with the Arp2/3 complex. Biochem Biophys Res Commun. 1999;260(1):296–302. source
  • Classified as probably not a substantial claim.

    Premisenone given

    The WAVE regulatory complex mediates branched actin polymerization, a process required for key cellular functions including migration, phagocytosis, vesicular transport, and immune synapse formation.

    “The WAVE regulatory complex (WRC) mediates branched actin polymerization, a process required for key cellular functions including migration, phagocytosis, vesicular transport, and immune synapse formation.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Premisenone given

    All reported pathogenic variants in the 31-exon NCKAP1L gene on chromosome 12 (NM_005337.5) segregated with disease and followed autosomal recessive inheritance patterns.

    “All reported pathogenic variants in the 31-exon NCKAP1L gene on chromosome 12 (NM_005337.5) segregated with disease and followed autosomal recessive inheritance patterns (Fig. 2).”
    Quote in the paperSubstantial claim
  • Classified as probably not a substantial claim. May combine two claims.

    Premisenone given

    WAVE isoforms are the scaffold of the WRC, an obligate heteropentameric complex containing HEM1/2, CYFIP1/2, HSPC300, and ABI1/2.

    “WAVE isoforms are the scaffold of the WRC, an obligate heteropentameric complex containing the additional subunits: hematopoietic protein 1/2 (HEM1/2), cytoplasmic FMR1 interacting protein 1/2 (CYFIP1/2), hematopoietic stem/progenitor cell protein 300 (HSPC300), and Abelson interactor 1/2 (ABI1/2).”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based).

    Premisenone given

    In human immune cells, formin proteins polymerize G-actin into linear filamentous actin bundles to generate filopodia, which are protruding structures required for chemosensation.

    “In human immune cells, formin proteins polymerize G-actin into linear filamentous actin (F-actin) bundles to generate filopodia, which are protruding structures required for chemosensation.”
    Quote in the paperNot a substantial claim
  • The quote only partly states this claim.

    Interpretationreasoning

    Poor pathogen clearance, accumulation of debris, and excess cytokine production by alveolar macrophages may predispose HEM1-deficient patients to recurrent infections and long-term lung injury.

    “Poor pathogen clearance, accumulation of debris, and excess cytokine production by alveolar macrophages may predispose patients to recurrent infections and long-term lung injury.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based).

    Interpretationreasoning

    HSCT would likely rescue HEM1 in all relevant hematopoietic cell lineages.

    “would likely rescue HEM1 in all relevant hematopoietic cell lineages.”
    Quote in the paperNot a substantial claim
    • Rests on an assumption: HSCT is a known treatment for other hematopoietic actinopathies such as WAS and DOCK8 deficiency.
  • Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based).

    Interpretationnone given

    The clinical benefit of sirolimus in some patients is possibly attributable to reduced immune cell activation and proliferation in pro-inflammatory settings.

    “the clinical benefit of sirolimus in some patients is possibly attributable to reduced immune cell activation and proliferation in pro-inflammatory settings.”
    Quote in the paperNot a substantial claim
    • Rests on an assumption: Corticosteroids and other immune suppressants such as sirolimus were clinically effective in controlling lymphoproliferation, autoimmunity, and auto-inflammatory symptoms.
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Interpretationreasoning

    The diversity of immunophenotypic changes in HEM1-deficient patients may be due to alterations of lymphocyte ontogeny and mature cell differentiation, as well as differences in genetics, epigenetic changes, and pathogen exposures.

    “This diversity of changes may be due to alterations of lymphocyte ontogeny and mature cell differentiation, as well as differences in genetics, epigenetic changes, and pathogen exposures.”
    Quote in the paperNot a substantial claim
41 of 41
  • The paper relies on this without support.

    Hepatomegaly, splenomegaly, and lymphadenopathy were observed broadly across patient cohorts.

    “hepatomegaly, splenomegaly, and lymphadenopathy that was observed broadly across patient cohorts.”
  • The paper relies on this without support.

    Corticosteroids and other immune suppressants such as sirolimus were clinically effective in controlling lymphoproliferation, autoimmunity, and auto-inflammatory symptoms.

    “Corticosteroids and other immune suppressants such as sirolimus were clinically effective in controlling lymphoproliferation, autoimmunity, and auto-inflammatory symptoms.”
  • The paper relies on this without support.

    Clinical responses to steroids were variable; one patient was successfully weaned off, but most required chronic steroids, azathioprine, or mycophenolate mofetil for long-term immune suppression.

    “Clinical responses to steroids were variable; one patient was successfully weaned off, but most required chronic steroids, azathioprine, or mycophenolate mofetil for long-term immune suppression.”
  • The paper relies on this without support.

    Rituximab led to partial resolution of renal disease in one patient with nephrotic syndrome.

    “Rituximab was initiated in one patient during an acute exacerbation of nephrotic syndrome, leading to partial resolution of renal disease.”
  • The paper relies on this without support.

    HSCT is a known treatment for other hematopoietic actinopathies such as WAS and DOCK8 deficiency.

    “HSCT is a known treatment for other hematopoietic actinopathies such as WAS and DOCK8 deficiency”
  • The paper relies on this without support.

    There are no data currently available for outcomes of HSCT in HEM1-deficient patients.

    “there are no data currently available for outcomes of HSCT in HEM1-deficient patients, including in some follow-up discussions regarding reported patients.”
  • The paper relies on this without support.

    HEM1 deficiency is the first reported WRC-related immunodeficiency.

    “since HEM1 deficiency is the first reported WRC-related immunodeficiency”
  • The paper relies on this without support.

    Some data suggest HEM1 may exist in pools outside of the WRC.

    “some data suggest that HEM1 may exist in pools outside of the WRC.”
8 of 8

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

Each contradiction between two passages listed here was confirmed by an independent check.

  • p.M371V is described as both destabilizing and non-destabilizing

    Minor

    The genetics section includes p.M371V among destabilizing substitutions, but later states that it impairs WRC function without destabilizing the complex.

1 of 1

Cites

Flagged first, then by citations

Cited by

Sorted by citations

Authors
Cook, S., Lenardo, M. J., & Freeman, A. F.
Affiliations
  • National Institutes of Health (US)
  • Vanderbilt University (US)
Corresponding author
  • Lenardo, Michael J.
  • Freeman, Alexandra F.
Venue
Journal of Clinical Immunology
Published
2022-07-22
Volume
42
Issue
8
Pages
1583-1592
ISSN
  • 0271-9142 (ISSN-L)
  • 1573-2592
OpenAlex
W4286615375
Cited by
24
References
53
Citations by year
2026: 3 · 2025: 6 · 2024: 10 · 2023: 5
FWCI
0.55
Type
journal article
Language
en
Open access
Locations
  • Journal of Clinical Immunology (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
Funders
  • Division of Intramural Research, National Institute of Allergy and Infectious Diseases
  • National Institutes of Health
  • National Institute of Allergy and Infectious Diseases
  • NHLBI Division of Intramural Research
Topics
  • Life Sciences › Immunology and Microbiology › Immunology › Immunodeficiency and Autoimmune Disorders
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Blood disorders and treatments
  • Life Sciences › Immunology and Microbiology › Immunology › Neutrophil, Myeloperoxidase and Oxidative Mechanisms
Keywords
WAVE regulatory complex, branched actin polymerization, actin dynamics, primary immunodeficiency, autoimmunity, genotype-phenotype correlation, hematopoietic cells, immune synapse formation, phagocytosis
MeSH terms
Actins, Genotype, Humans, Membrane Proteins, Phagocytosis, Phenotype, Autoimmunity

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-11-02.

Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-11-02.

Cited sources are checked by gpt-6-sol.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

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