HEM1 Actin Immunodysregulatory Disorder: Genotypes, Phenotypes, and Future Directions
Open accessAbstract
Cells of the innate and adaptive immune systems depend on proper actin dynamics to control cell behavior for effective immune responses. Dysregulated actin networks are known to play a pathogenic role in an increasing number of inborn errors of immunity. The WAVE regulatory complex (WRC) mediates branched actin polymerization, a process required for key cellular functions including migration, phagocytosis, vesicular transport, and immune synapse formation. Recent reports of pathogenic variants in NCKAP1L, a hematopoietically restricted gene encoding the HEM1 protein component of the WRC, defined a novel disease involving recurrent bacterial and viral infections, autoimmunity, and excessive inflammation (OMIM 141180). This review summarizes the diverse clinical presentations and immunological phenotypes observed in HEM1-deficient patients. In addition, we integrate the pathophysiological mechanisms described in current literature and highlight the outstanding questions for diagnosis and management of the HEM1 actin immunodysregulatory disorder.
AI snapshot
Written from the paper’s full text.
TL;DR
HEM1 deficiency is an autosomal recessive inborn error of immunity caused by pathogenic variants in NCKAP1L, which destabilize or impair the WAVE regulatory complex and produce recurrent infections, autoimmunity, hyperinflammation, and atopy. This review synthesizes nine reported patients from seven kindreds and outlines proposed mechanisms, diagnostic considerations, and unresolved therapeutic questions.
Key findings
- HEM1 deficiency has been reported in nine individuals from seven kindreds, with autosomal recessive inheritance and biallelic missense, compound heterozygous, or splice-site variants in NCKAP1L; the gnomAD observed-to-expected ratio for loss-of-function variants was 0.20 (90% CI 0.13–0.33), suggesting selection against HEM1 loss of function.
- Recurrent infections occurred in 9/9 patients; other common features included splenomegaly in 7/9, hepatomegaly in 6/9, atopic disease in 5/9, poor antibody response to vaccination or infection in 6/9, increased total B cells in 6/9, low naïve CD4 T cells in 6/9, and HLH in 3/9.
- Proposed mechanisms include impaired innate immune cell migration and phagocytosis, defective T and B cell immune synapse activation, weaker BCR signaling that may permit autoreactive B cell survival, and reduced cortical actin barrier integrity leading to cytotoxic cytokine hypersecretion.
- mTORC2 signaling appears diminished in HEM1-deficient patient cells, but mouse models show paradoxical WRC–mTOR interactions, leaving the exact crosstalk and therapeutic role of mTOR inhibitors unresolved.
Methods
- Narrative review summarizing published clinical, genetic, immunological, and mechanistic literature on HEM1 deficiency.
- Data include reports of nine patients from seven kindreds, variant data from gnomAD and the Exome Variant Server, immunophenotyping and serologic findings, and findings from HEM1-deficient mouse models.
- Main analysis is qualitative synthesis of genotype–phenotype relationships, proposed pathogenic mechanisms, diagnostic approaches, and therapeutic perspectives.
Limitations
- Stated in the paper: the limited number of reported cases means proper therapy is still being defined, and no data are currently available for outcomes of hematopoietic stem cell transplant in HEM1-deficient patients.
- Stated in the paper: clinical heterogeneity at presentation complicates diagnosis, and investigations of immune cell population skewing were hampered by immunosuppressive medications.
- Evident from the text: as a narrative review, it does not describe a systematic search strategy or meta-analysis, and its conclusions rely on a very small patient cohort plus mouse-model data.
Model-written summary. Check it against the paper before relying on it.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
149 of 167 cited sources checked · 30 supported · 5 flagged · accuracy not yet measured
- Findingcitation
Most HEM1-deficient patients (six out of nine) displayed increased total B cells.
“Most patients (six out of nine) displayed increased total B cells [8–10].”
Quote in the paperNot a substantial claim3 of 3 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The passage describing the patient cohort (section labeled Abstract; page unavailable) reports five HEM1-deficient patients and poor antibody responses, but does not give total B-cell counts. Searches for increased total B cells and for “B cells” found no passage supporting the six-of-nine figure. Because the sentence cites multiple sources, this does not establish where that figure came from. (LLM, conf=0.74)
Experimental — accuracy not yet measured - cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
In Results, ‘Aberrant B-cell phenotype in HEM1 deficiency’ (page unavailable), the paper reports that patients’ absolute CD19+ B-cell counts were within the age-matched normal range. It reports increases in particular B-cell subsets, not total B cells, and does not report six of nine patients with increased total B cells. (LLM, conf=0.87)
Checked by a reasoning model — may be wrong.
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
Table 1 in the Clinical phenotype section shows an elevated CD19+ B-cell count for patient 1 at one measurement, while the other reported counts are within their stated normal ranges. The paper reports two patients, not nine, and does not establish that six of nine had increased total B cells. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Interpretationcitation
During B cell development and BCR editing, defective actin polymerization at immune synapses results in weaker signals, allowing for survival of autoreactive B cells with inherently stronger signals.
“During B cell development and BCR editing, defective actin polymerization at immune synapses results in weaker signals, allowing for survival of autoreactive B cells with inherently stronger signals [9, 39, 40].”
Quote in the paperSubstantial claim3 of 3 sources checked- cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
The Discussion says HEM1-deficient B cells form less effective immune synapses and receive weaker signals. It proposes that stronger signals from autoreactive antigens may then favor autoreactive B-cell survival, but explicitly calls this a hypothesis; the citing sentence presents that mechanism as an established result. The paper discusses receptor adaptation during germinal-center maturation, rather than directly demonstrating the mechanism during BCR editing. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [39] Kolhatkar NS, Brahmandam A, Thouvenel CD, Becker-Herman S, Jacobs HM, Schwartz MA, et al. Altered BCR and TLR signals promote enhanced positive selection of autoreactive transitional B cells in Wiskott-Aldrich syndrome. J Exp Med. 2015;212(10):1663–77. source
The Discussion (page unavailable) says WASp deficiency promotes rather than weakens BCR signaling and favors positive selection of low-affinity autoreactive transitional B cells. The Results section on negative selection (page unavailable) reports essentially identical receptor-editing measurements in deficient and control cells. These findings contradict the proposed weaker-signal, altered-editing mechanism; the cited passages do not establish the immune-synapse mechanism. (LLM, conf=0.90)
Checked by a reasoning model — may be wrong.
Experimental — accuracy not yet measured - cites [40] Li J, Yin W, Jing Y, Kang D, Yang L, Cheng J, et al. The coordination between B cell receptor signaling and the actin cytoskeleton during B cell activation. Front Immunol. 2018;9:3096. source
The sections on immune-synapse formation and B-cell morphology say actin-dependent spreading promotes BCR microclusters and amplifies signaling. But the paper does not link defective actin polymerization to survival of autoreactive B cells during development or receptor editing; its section on actin polymerization also reports increased BCR signaling in WASP-deficient B cells. No page numbers are available in our copy. (LLM, conf=0.83)
Experimental — accuracy not yet measured
- Findingcitation
Impaired specific antibody production after vaccinations or EBV infection was observed in six HEM1-deficient patients.
“Impaired specific antibody production after vaccinations or EBV infection was observed in six patients [8, 10].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The patient-description passage (section labeled Abstract; page unavailable) reports poor specific antibody responses in five HEM1-deficient patients, supporting the core finding. It does not specify whether those responses followed vaccination or EBV infection, and it reports five patients rather than six. (LLM, conf=0.90)
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
The Clinical phenotype section (Table 1; page unavailable) reports protective tetanus antibody titers for both patients studied. The same section reports that both patients were EBV-IgG seropositive. These findings contradict the attributed claim of impaired vaccine- or EBV-specific antibody production in six patients; this paper describes two patients, not six. (LLM, conf=0.85)
Checked by a reasoning model — may be wrong.
Experimental — accuracy not yet measured
- Premisecitation
Cells of the innate and adaptive immune systems depend on proper actin dynamics to control effective immune responses.
“Cells of the innate and adaptive immune systems depend on proper actin dynamics to control effective responses, which is highlighted by inborn errors of immunity (IEI) affecting actin networks, known as actinopathies (reviewed in [3–7]).”
Quote in the paperSubstantial claim5 of 5 sources checked- cites [3] Papa R, Penco F, Volpi S, Gattorno M. Actin remodeling defects leading to autoinflammation and immune dysregulation. Front Immunol. 2020;11:604206. source
- cites [4] Sprenkeler EGG, Webbers SDS, Kuijpers TW. When actin is not actin’ like it should: a new category of distinct primary immunodeficiency disorders. J Innate Immun. 2021;13(1):3–25. source
- cites [5] Chan AY, Torgerson TR. Primary immune regulatory disorders: a growing universe of immune dysregulation. Curr Opin Allergy Clin Immunol. 2020;20(6):582–90. source
- cites [6] Tangye SG, Al-Herz W, Bousfiha A, Cunningham-Rundles C, Franco JL, Holland SM, et al. The ever-increasing array of novel inborn errors of immunity: an interim update by the IUIS committee. J Clin Immunol. 2021;41(3):666–79. source
- cites [7] Kamnev A, Lacouture C, Fusaro M, Dupré L. Molecular tuning of actin dynamics in leukocyte migration as revealed by immune-related actinopathies. Front Immunol. 2021;12:750537. source
- Findingcitation
HEM1-deficient patients with severe autoimmune features display reduced proportions of naïve CD4+ and CD8+ T cell populations.
“Patients with severe autoimmune features display reduced proportions of naïve CD4+ and CD8+ T cell populations [8–10].”
Quote in the paperNot a substantial claim3 of 3 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The patient-description passage (labeled Abstract; page unavailable) reports autoimmune manifestations in some HEM1-deficient patients, but does not give proportions of naïve CD4+ or CD8+ T cells. Searches for naïve T-cell subsets and CD45RA found no passage in our copy establishing the claimed reduction. (LLM, conf=0.73)
Experimental — accuracy not yet measured - cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
The Results section, “Impaired T-cell function in HEM1 deficiency” (page unavailable), reports elevated relative percentages of memory T-cell subsets in HEM1-deficient patients, while the Discussion identifies P1 as having severe SLE-like autoimmunity. Our copy does not state that the proportions of naïve CD4+ and naïve CD8+ T cells were reduced; an increase in memory subsets alone does not establish both specific reductions. (LLM, conf=0.78)
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
Table 1 (Clinical phenotype; page not provided) shows markedly reduced proportions of naïve CD4+ and CD8+ T cells in both NCKAP1L/HEM1-deficient patients compared with reference ranges. The Clinical phenotype and Immunological phenotype sections report a high antinuclear-antibody titer in one patient, but do not establish severe autoimmune features in both patients, so that qualifier is not supported by this source. (LLM, conf=0.85)
Experimental — accuracy not yet measured
- Findingcitation
Increased proportions of naïve B cells and B cell subsets associated with autoimmunity (innate-like memory B CD19+CD21loCD38lo and CD19+CD21−) were observed less consistently in HEM1-deficient patients.
“Increased proportions of naïve B cells and B cell subsets associated with autoimmunity (innate-like memory B CD19+CD21loCD38lo and CD19+CD21−) were observed less consistently [9, 10].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
The Results section, “Aberrant B-cell phenotype in HEM1 deficiency” (page unavailable), reports increased innate-like CD19+CD38loCD21lo memory B cells associated with autoimmunity. It says naïve B-cell proportions were within the age-matched normal range, however, and does not report an increase in CD19+CD21− cells. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
The Results and discussion section (‘Immunological phenotype of NCKAP1L-deficient patients’; page not provided) reports a slight increase in naïve B cells in both patients and an abnormal proportion of CD19+CD21− B cells in only one patient, consistent with a less consistent subset finding. It links CD19+CD21− cells to autoimmunity, but does not report the specified CD19+CD21loCD38lo innate-like memory subset. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Findingcitation
Those three HEM1-deficient patients demonstrated transaminitis or sinusoidal dilatation on liver biopsy.
“and demonstrated transaminitis or sinusoidal dilatation on liver biopsy [8, 10].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The patient-description passage (labeled Abstract; page unavailable) reports chronic hepatosplenomegaly in a study of five HEM1-deficient patients. Searches for transaminitis, sinusoidal dilatation, liver biopsy, and related terms found no passage establishing either claimed finding in the three patients. (LLM, conf=0.73)
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
The Clinical phenotype section (page unavailable) reports transaminitis in patient 2 and sinusoidal dilatation in his liver tissue. This paper describes two HEM1-deficient patients, not three, so it does not by itself support the claim about all three patients. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Findingcitation
All HEM1-deficient patients suffer from recurrent infections such as otitis media, upper respiratory infections, pneumonia, and abscesses.
“All patients suffer from recurrent infections such as otitis media, upper respiratory infections, pneumonia, and abscesses [8–10].”
Quote in the paperNot a substantial claim3 of 3 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The passage labeled Abstract (page unavailable) reports recurrent skin and severe respiratory infections, including pneumonia, in five HEM1-deficient patients. It does not specifically report otitis media, upper respiratory infections, or abscesses, and its five-patient cohort does not establish that all HEM1-deficient patients have recurrent infections. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
In Results, ‘Identification of human HEM1 deficiency’ (page not provided), the paper reports recurrent respiratory infections in both patients studied, and ear infections and skin abscesses in one. It does not report pneumonia, and its findings in two patients do not establish that all HEM1-deficient patients have recurrent infections. (LLM, conf=0.87)
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
In Results and discussion > Clinical phenotype (page not provided), Patient 2 had recurrent otitis media, sinopulmonary infections, and viral illnesses including upper respiratory infections. Patient 1 is described as developing BCG lymphadenitis, not recurrent infections; the cited paper therefore does not support “all patients.” The cited passages also do not report pneumonia or abscesses. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Premisecitation
One investigation revealed increased exhaustion and senescence in HEM1-deficient patient CD4+ and CD8+ T cells, closely resembling the phenotype of DOCK8-deficient T cells.
“One investigation revealed increased exhaustion and senescence in patient CD4+ and CD8+ T cells, closely resembling the phenotype of DOCK8-deficient T cell [10, 30].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
In Results and discussion, the immunological-phenotype section reports increased activation and senescence markers in patient CD8+ T cells, with similar but less pronounced findings in CD4+ T cells. The transcriptomics section reports activated T-cell exhaustion signaling pathways in patient blood cells, but does not establish exhaustion separately in CD4+ and CD8+ cells. The paper discusses DOCK8 deficiency in relation to NK-cell killing, not a closely resembling T-cell exhaustion or senescence phenotype. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [30] Pillay BA, Avery DT, Smart JM, Cole T, Choo S, Chan D, et al. Hematopoietic stem cell transplant effectively rescues lymphocyte differentiation and function in DOCK8-deficient patients. JCI Insight. 2019;5:e127527. source
- Premisecitation
In gnomAD, the observed to expected ratio of loss-of-function variants in NCKAP1L was 0.20 (90% CI 0.13-0.33).
“In the Genome Aggregation Database (gnomAD), the observed to expected ratio of loss-of-function (LoF) variants in NCKAP1L was 0.20 (90% CI 0.13–0.33), suggesting there is selection against HEM1 LoF [26].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [26] Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, et al. The mutational constraint spectrum quantified from variation in 141,456 humans. Nature. 2020;581(7809):434–43. source
The LoF intolerance of human genes section describes gnomAD’s gene-level observed-to-expected ratios and 90% confidence bounds, but gives no NCKAP1L result. Searches for NCKAP1L, HEM1, and the stated ratio and interval found no passage in our copy verifying those gene-specific values. The indexed passages have no page numbers. (LLM, conf=0.72)
Experimental — accuracy not yet measured
- Premisecitation
At the membrane, the WRC responds to signals from phosphatidylinositol (3,4,5)-triphosphate, ABL and CDK5 kinases, and SH3-domain containing scaffolding proteins such as IRSp53.
“At the membrane, the WRC responds to a panoply of signals from phosphatidylinositol (3,4,5)-triphosphate, Abelson (ABL) and cyclin dependent kinase 5 (CDK5) kinases, and SH3-domain containing scaffolding proteins such as IRSp53 [1].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [1] Chen B, Brinkmann K, Chen Z, Pak CW, Liao Y, Shi S, et al. The WAVE regulatory complex links diverse receptors to the actin cytoskeleton. Cell. 2014;156(1–2):195–207. source
- Findingcitation
Two unrelated HEM1-deficient patients displayed persistently elevated proportions of αβ double-negative T cells.
“Two unrelated patients displayed persistently elevated proportions of αβ double-negative T (DNT) cells, an interesting comparison to the hallmark expansion of DNTs in autoimmune lymphoproliferative syndrome [8, 31, 32].”
Quote in the paperNot a substantial claim2 of 3 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The patient-description passage (section labeled Abstract; page unavailable) reports five HEM1-deficient patients from four unrelated families, but does not describe αβ double-negative T cells. Searches for “double-negative,” “αβ double negative,” and the corresponding CD4/CD8-negative phenotype found no passage documenting persistently elevated proportions in two patients. (LLM, conf=0.73)
Experimental — accuracy not yet measured - cites [31] Marlies A, Udo G, Juergen B, Bernd S, Herrmann M, Haas JP. The expanded double negative T cell populations of a patient with ALPS are not clonally related to CD4+ or to CD8+ T cells. Autoimmunity. England. 2007;40:299–301. source
- cites [32] Park H, Staehling-Hampton K, Appleby MW, Brunkow ME, Habib T, Zhang Y, et al. A point mutation in the murine Hem1 gene reveals an essential role for Hematopoietic protein 1 in lymphopoiesis and innate immunity. J Exp Med. 2008;205(12):2899–913. source
The Results section on bone-marrow chimeras reports that most thymic cells derived from Hem1-deficient mouse donors remained at the double-negative stage. The paper does not report two unrelated human patients, persistently elevated proportions of αβ double-negative T cells, or the claimed patient-level finding. (LLM, conf=0.82)
Experimental — accuracy not yet measured
- Premisecitation
Two distinct RAC1-binding sites on CYFIP1/2 and a recently discovered ARF1-binding site on HEM1/2 cooperatively activate the WRC.
“Two distinct RAC1-binding sites on CYFIP1/2 and a recently discovered ARF1-binding site on HEM1/2 cooperatively activate the WRC [16, 17].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [16] Rottner K, Stradal TEB, Chen B. WAVE regulatory complex. Curr Biol. 2021;31(10):R512–7. source
The Composition and assembly section identifies Sra1 as CYFIP1 and its ortholog as CYFIP2; Regulation mechanisms describes two Rac1-binding sites on Sra1. It says Arf1 might cooperate with Rac1, but does not identify a recently discovered Arf1-binding site on HEM1/2 and says how the GTPases cooperate is mostly unknown. Page numbers are unavailable in our copy. (LLM, conf=0.87)
Experimental — accuracy not yet measured - cites [17] Chen B, Chou HT, Brautigam CA, Xing W, Yang S, Henry L, et al. Rac1 GTPase activates the WAVE regulatory complex through two distinct binding sites. Elife. 2017;6:e29795. source
The Introduction and Discussion report two Rac1-binding sites on Sra1 and show that both contribute to WRC activation. The Discussion mentions prior observations that Rac1 and Arf can cooperatively activate the WRC, but it does not locate an Arf1-binding site on HEM1/2 or establish cooperation among all three sites. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Premisecitation
Most reported pathogenic NCKAP1L variants are biallelic missense variants resulting in destabilizing amino acid substitutions: p.R129W in exon 4, p.V141F in exon 5, p.R258L in exon 7, and p.P359L and p.M371V in exon 11.
“Most are biallelic missense variants resulting in destabilizing amino acid substitutions: p.R129W in exon 4, p.V141F in exon 5, p.R258L in exon 7, and p.P359L and p.M371V in exon 11 [8, 9].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The paper’s patient-description passage (section labeled Abstract; page not provided) reports biallelic NCKAP1L missense variants in all five patients studied, but does not establish that most reported pathogenic variants have this form or give the claimed variant-to-exon list. Its biochemical-analysis passage (same section; page not provided) says most patients had WRC destabilization, but M371V retained normal WRC protein expression and instead disrupted Arf1-mediated activation. Thus the claim incorrectly treats M371V as destabilizing. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
The Results section (‘Identification of human HEM1 deficiency’; page unavailable) identifies a homozygous NCKAP1L missense variant, p.R129W, in two affected siblings. ‘Defective WRC assembly and stability’ reports reduced HEM1 and WRC-subunit expression in patient cells. Our copy does not establish that most reported pathogenic variants are biallelic missense variants, give p.R129W’s exon, or identify the other four variants and their exon locations. (LLM, conf=0.87)
Experimental — accuracy not yet measured
- Findingcitation
Three HEM1-deficient patients with features such as fever, splenomegaly, hyperferritinemia, hypertriglyceridemia, hypofibrinogenemia, and increased soluble IL-2 receptor met diagnostic criteria for hemophagocytic lymphohistiocytosis.
“Three patients with features such as fever, splenomegaly, hyperferritinemia, hypertriglyceridemia, hypofibrinogenemia, and increased soluble IL-2 receptor met diagnostic criteria for hemophagocytic lymphohistiocytosis (HLH) [8, 10, 28, 29]”
Quote in the paperNot a substantial claim3 of 4 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The patient-description passage (section labeled Abstract; page unavailable) reports five HEM1-deficient patients and chronic hepatosplenomegaly, supporting the splenomegaly feature. It does not report that three patients met HLH diagnostic criteria or document the listed fever and laboratory findings; searches for HLH and those findings found no supporting passage. (LLM, conf=0.81)
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
The Results and discussion, Clinical phenotype section reports formal HLH diagnoses in two NCKAP1L-deficient patients, with fever or splenomegaly and elevated ferritin, triglycerides, and soluble IL-2 receptor. It does not report three such patients or identify hypofibrinogenemia among their diagnostic features. Page numbers are unavailable in our copy. (LLM, conf=0.90)
Experimental — accuracy not yet measured - cites [28] Brisse E, Wouters CH, Matthys P. Advances in the pathogenesis of primary and secondary haemophagocytic lymphohistiocytosis: differences and similarities. Br J Haematol. 2016;174(2):203–17. source
- cites [29] Ishii E. Hemophagocytic lymphohistiocytosis in children: pathogenesis and treatment. Front Pediatr. 2016;4:47. source
The Clinical and Laboratory Findings of HLH section (Table 1; page unavailable) lists the named features as diagnostic criteria or markers of HLH. It does not report three HEM1-deficient patients or establish that those patients met the criteria. (LLM, conf=0.87)
Experimental — accuracy not yet measured
- Premisecitation
A dense ring of cortical branched actin below the cell membrane is a barrier that mechanically inhibits nonspecific vesicle fusion, thereby allowing for coordinated exocytosis.
“A dense ring of cortical branched actin below the cell membrane is a barrier that mechanically inhibits nonspecific vesicle fusion, thereby allowing for coordinated exocytosis (Fig. 1c) [11, 13, 21].”
Quote in the paperNot a substantial claim2 of 3 sources checked- cites [11] Porat-Shliom N, Milberg O, Masedunskas A, Weigert R. Multiple roles for the actin cytoskeleton during regulated exocytosis. Cell Mol Life Sci. 2013;70(12):2099–121. source
In “Anchoring site for the secretory vesicles and barrier function” (page unavailable), the review describes cortical actin as a thick meshwork and presents its physical-barrier role as a model; it also reports an actin ring at NK-cell fusion sites. The claim captures that proposed barrier role, but the paper does not identify the barrier as branched actin or establish a dense ring as its general structure. It also states the proposed mechanism more definitively than the review does. (LLM, conf=0.87)
Experimental — accuracy not yet measured - cites [13] Wollman R, Meyer T. Coordinated oscillations in cortical actin and Ca2+ correlate with cycles of vesicle secretion. Nat Cell Biol. 2012;14(12):1261–9. source
The Discussion describes cortical actin as a barrier to secretory granules reaching the plasma membrane and suggests that it minimizes inadvertent secretion. The paper also links actin oscillations to coordinated vesicle capture, passage and fusion. It does not describe a dense ring of branched actin or say that the barrier directly inhibits nonspecific vesicle fusion; its stated barrier mechanism is restricted access to the membrane. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [21] Meunier FA, Gutiérrez LM. Captivating new roles of F-actin cortex in exocytosis and bulk endocytosis in neurosecretory cells. Trends Neurosci. 2016;39(9):605–13. source
- Findingcitation
Reported viral infections in HEM1-deficient patients have included disseminated herpes simplex virus, Epstein-Barr virus viremia, and gastroenteritis.
“Reported viral infections have included disseminated herpes simplex virus, Epstein-Barr virus viremia, and gastroenteritis [8–10].”
Quote in the paperNot a substantial claim3 of 3 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The passage describing the five patients (section labeled Abstract; page unavailable) reports recurrent viral skin infections in HEM1-deficient patients. It does not identify disseminated herpes simplex virus, Epstein–Barr virus viremia, or gastroenteritis; searches for those terms found no matching passage in our copy. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
The Results section, “Identification of human HEM1 deficiency” (page unavailable), reports recurrent respiratory and other infections in two patients but does not identify them as viral. Searches for herpes simplex, EBV viremia, and gastroenteritis found no passage reporting those infections in the patients; the mention of EBV-immortalized cells concerns a laboratory method, not viremia. (LLM, conf=0.76)
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
The Clinical phenotype section reports that patient 2 had gastroenteritis among recurrent viral illnesses and low-titer Epstein–Barr virus viremia. It does not report disseminated herpes simplex virus infection; searches for that term found no supporting passage in our copy. Page numbers were not available. (LLM, conf=0.90)
Experimental — accuracy not yet measured
- Findingcitation
Several dysmorphic and developmental syndromic features may be observed in HEM1-deficient patients, such as intracerebral ventricular dilation, tricuspid valve deficiency, bicuspid aortic valve, ventricular septal defects, pectus carinatum, and poor dentition.
“Interestingly, several dysmorphic and developmental syndromic features may be observed, such as intracerebral ventricular dilation, tricuspid valve deficiency, bicuspid aortic valve, ventricular septal defects, pectus carinatum, and poor dentition [8].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The patient-description passage (indexed under Abstract; no page supplied) reports infections, atopy, inflammation, and lymphadenopathy, but does not address the listed dysmorphic or developmental features. Searches for the named ventricular, valve, chest, and dental findings, and for related congenital abnormalities, found no passage in our copy that addresses them. (LLM, conf=0.74)
Experimental — accuracy not yet measured
- Premisecitation
Two siblings carried compound heterozygous deleterious mutations encoding the p.P359L variant as well as a p.V519L variant in exon 16.
“Two siblings carried compound heterozygous deleterious mutations encoding the p.P359L variant as well as a p.V519L variant in exon 16 [8].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The patient-description passage (indexed under Abstract; no page supplied) reports five patients from four families with bi-allelic NCKAP1L missense mutations predicted to be damaging. It does not identify two siblings as compound heterozygotes or specify p.P359L, p.V519L, or exon 16; searches for those variants, siblings, and exon 16 found no confirming passage. (LLM, conf=0.83)
Experimental — accuracy not yet measured
- Findingcitation
Lymph node biopsy from a different HEM1-deficient patient showed evidence of histiocytosis and emperipolesis suggesting Rosai-Dorfman disease.
“Lymph node biopsy from a different patient showed evidence of histiocytosis and emperipolesis suggesting Rosai-Dorfman disease [8].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The patient-description passage in our copy (section labeled Abstract; page unavailable) reports lymphadenopathy in HEM1-deficient patients, but does not describe a lymph node biopsy or its findings. Searches for emperipolesis, histiocytosis, and Rosai-Dorfman disease found no passage addressing the claimed biopsy result. (LLM, conf=0.73)
Experimental — accuracy not yet measured
- Findingcitation
Other clinical features in HEM1-deficient patients include mild microcytic anemia and anisopoikilocytosis.
“Other clinical features include mild microcytic anemia and anisopoikilocytosis [10].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
The Clinical phenotype section reports mild anemia with anisopoikilocytosis in patient 1 and anisopoikilocytosis in patient 2. Table 1 shows that patient 1's mean corpuscular volume was within the listed normal range, while patient 2 had microcytosis with severe anemia at age 9 and a normal hemoglobin value at age 11. Thus, the paper supports anisopoikilocytosis and anemia, but not the combined description of mild microcytic anemia in these patients. (LLM, conf=0.87)
Experimental — accuracy not yet measured
- Interpretationcitation
The observed-to-expected ratio of loss-of-function variants in NCKAP1L suggests there is selection against HEM1 loss-of-function.
“In the Genome Aggregation Database (gnomAD), the observed to expected ratio of loss-of-function (LoF) variants in NCKAP1L was 0.20 (90% CI 0.13–0.33), suggesting there is selection against HEM1 LoF [26].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [26] Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, et al. The mutational constraint spectrum quantified from variation in 141,456 humans. Nature. 2020;581(7809):434–43. source
The LoF intolerance of human genes section explains that a low observed-to-expected ratio indicates depletion of predicted LoF variants and selection against them. Our copy does not give the NCKAP1L-specific ratio of 0.20 or its 90% confidence interval of 0.13–0.33, so it supports the interpretation but not the cited numerical result. (LLM, conf=0.82)
Experimental — accuracy not yet measured
- Premisecitation
HEM1 protein modeling suggested that the affected amino acids, despite their locations on distant exons, cluster in a hotspot that is likely crucial for conformational stability.
“HEM1 protein modeling suggested that the affected amino acids, despite their locations on distant exons, cluster in a hotspot that is likely crucial for conformational stability [16].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [16] Rottner K, Stradal TEB, Chen B. WAVE regulatory complex. Curr Biol. 2021;31(10):R512–7. source
The “Implications in diseases” section says Hem1 has one mutation hot spot and that most Hem1 mutations appear to disrupt its structure. It also describes WRC mutations clustering spatially despite being distant in the protein’s primary sequence, but does not establish that the affected Hem1 amino acids are encoded by distant exons; it notes an exception to the structural-disruption pattern. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Premisecitation
Loss of the WRC, one of the two primary Arp2/3 nucleation promoting factors, contributes to impaired specific immunity and concomitant nonspecific immune system hyperactivation.
“One study showed how loss of the WRC, one of the two primary actin-related proteins 2/3 (Arp2/3) nucleation promoting factors (NPF), contributes to the complex picture of impaired specific immunity and concomitant nonspecific immune system hyperactivation [8].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The Abstract reports that HEM1 mutations destabilize or impair activation of the WRC, causing immunodeficiency alongside cytokine overproduction and immune hyperresponsiveness. It also identifies the WRC as controlling Arp2/3-mediated actin nucleation, but does not establish the claim’s more specific description of it as one of two primary Arp2/3 nucleation-promoting factors. (LLM, conf=0.84)
Experimental — accuracy not yet measured
- Findingcitation
Atopic disease in the form of food allergy, allergic rhinitis, and asthma occurs in more than half of the HEM1-deficient patient cohort.
“Atopic disease in the form of food allergy, allergic rhinitis, and asthma occurs in more than half of the patient cohort, highlighting exaggerated atopic inflammatory responses against environmental allergens and irritants [8–10].”
Quote in the paperNot a substantial claim3 of 3 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The passage labeled Abstract (page unavailable) reports atopic disease among five HEM1-deficient patients. It does not specify food allergy, allergic rhinitis, or asthma, or establish that atopy affected more than half of the cohort; searches for those conditions found no supporting passage. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
The Results section, “Identification of human HEM1 deficiency” (page unavailable), describes two affected siblings and their infections and autoimmune symptoms, but does not report food allergy, allergic rhinitis, or asthma. Searches for those conditions and atopic disease found no passage establishing that they occurred in more than half of the HEM1-deficient patients. (LLM, conf=0.76)
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
The Clinical phenotype section describes two NCKAP1L-deficient patients but does not report food allergy, allergic rhinitis, asthma, or a prevalence of atopic disease. Searches for those conditions and for atopy in a HEM1-deficient cohort found no passage addressing the claim; the reported IgE level alone does not establish it. No page numbers were available in the indexed passages. (LLM, conf=0.73)
Experimental — accuracy not yet measured
- Findingcitation
Other bacterial infections in HEM1-deficient patients have included cellulitis, septic arthritis, and cholecystitis.
“Other bacterial infections have included cellulitis, septic arthritis, and cholecystitis [8–10].”
Quote in the paperNot a substantial claim3 of 3 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The paper’s patient-description passage (labeled Abstract; page unavailable) reports recurrent bacterial and viral skin infections in HEM1-deficient patients, supporting the general infection context. It does not identify cellulitis, septic arthritis, or cholecystitis; searches for the listed conditions found no matching passage in our copy. (LLM, conf=0.83)
Experimental — accuracy not yet measured - cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
The Results section, “Identification of human HEM1 deficiency” (page unavailable), reports recurrent infections and treatment for assumed or proven bacterial infections in a HEM1-deficient patient. It does not identify cellulitis, septic arthritis, or cholecystitis among those infections. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
The Clinical phenotype section reports BCG lymphadenitis in one HEM1-deficient patient and recurrent otitis media and sinopulmonary infections in another. Searches for cellulitis, septic arthritis, and cholecystitis found no passage in our copy reporting any of those three conditions. (LLM, conf=0.75)
Experimental — accuracy not yet measured
- Findingcitation
Subsets of CD4+ central memory, effector memory, and T effector memory RA+ cells are frequently increased in HEM1-deficient patients.
“In contrast, subsets of CD4+ central memory (CM), effector memory (EM), and T effector memory RA+ (TEMRA) cells are frequently increased [9, 10].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
The Results section, “Impaired T-cell function in HEM1 deficiency” (page unavailable), reports elevated relative percentages of central memory and exhausted effector memory cells in the patients. It does not report an increase in CD4+ TEMRA cells, and the passage does not specify that both elevated subsets were CD4+. The claim is therefore more specific than this source supports. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
The Clinical phenotype table reports elevated CD4+ central-memory and effector-memory percentages in both patients relative to their reference ranges. CD4+ TEMRA percentages, however, fall within those ranges (3% versus 0–5%, and 1% versus 1–2%). The paper studied two patients, so it also does not establish how frequently this pattern occurs among HEM1-deficient patients. (LLM, conf=0.90)
Experimental — accuracy not yet measured
- Premisecitation
Differential RNA expression governs which isoform will be incorporated in the WRC.
“Differential RNA expression governs which isoform will be incorporated in the WRC [14].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [14] Chen Z, Boren D, Padrick SB et al. Structure and control of the actin regulatory WAVE complex. Nature. 2010;468:533–8. source
The ‘Overall structure of the WRC’ section identifies WAVE1 and Abi2 in the assembled complex, and describes experiments replacing WAVE2 in HeLa cells. Neither that section nor the passages returned for ‘RNA expression’ and ‘isoforms differential expression’ addresses whether differential RNA expression determines which isoform is incorporated. (LLM, conf=0.72)
Experimental — accuracy not yet measured
- Premisecitation
Dysregulated actin networks cause recurrent infections often coupled with autoinflammation, autoimmunity, and atopic disease in inborn errors of immunity such as Wiskott Aldrich syndrome, DOCK8 deficiency, and X-linked moesin-associated immune deficiency.
“Dysregulated actin networks cause recurrent infections often coupled with autoinflammation, autoimmunity, and atopic disease in IEIs such as Wiskott Aldrich syndrome, DOCK8 deficiency, and X-linked moesin-associated immune deficiency [3].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [3] Papa R, Penco F, Volpi S, Gattorno M. Actin remodeling defects leading to autoinflammation and immune dysregulation. Front Immunol. 2020;11:604206. source
- Findingcitation
Siblings of patients from three of the seven kindreds died before 3 years of age from unknown causes or known infections, possibly because of HEM1 deficiency.
“Notably, siblings of patients from three of the seven kindreds died before 3 years of age from unknown causes or known infections, possibly because of HEM1 deficiency [8, 9].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The Abstract describes five patients from four unrelated families who had serious infections, but it does not report deaths among their siblings. Searches for siblings, deaths before age three, and seven kindreds found no passage addressing those details; the two citations may together cover more families than this paper alone. (LLM, conf=0.73)
Experimental — accuracy not yet measured - cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
In Results, ‘Identification of human HEM1 deficiency’ (page unavailable), the paper reports that an older sister of its two patients died two hours after birth of an unknown cause. It does not report deaths among siblings in three of seven kindreds or deaths from known infections, and it says no tissue was available to investigate whether the deceased sister had HEM1 deficiency. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Premisecitation
Patient cells demonstrated reduced mTOR activity in the absence of WRC.
“data from patient cells reliably demonstrated reduced mTOR activity in the absence of WRC [8, 9].”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The passage on TCR signaling (section labeled Abstract; page unavailable) reports reduced phosphorylation of the mTORC2 substrate AKT Ser473 in HEM1-deficient patient T cells, supporting reduced mTORC2 signaling. But the paper distinguishes HEM1’s role in mTORC2 regulation from its role in the WRC; it does not establish that absence of the WRC itself reduced mTOR activity. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
The Results sections report severely reduced WRC subunits in patient cells and decreased phosphorylated AKT in patient B cells compared with normal donor B cells. They do not report reduced mTOR activity; a search for mTOR in our copy found no passage establishing that specific claim. (LLM, conf=0.83)
Experimental — accuracy not yet measured
- Premisecitation
In HEM1-deficient patients, phosphorylation of AKT at serine 473 in response to various stimuli (CD3/28 TCR stimulation, IgM BCR stimulation, fibronectin, and ICAM-1) is diminished in T and B cells.
“Phosphorylation of AKT at serine 473, a specific target of the mTORC2 kinase complex, in response to various stimuli (CD3/28 TCR stimulation, IgM BCR stimulation, fibronectin, and ICAM-1) was diminished in T and B cells from patients [8, 9].”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The passage discussing Fig. 4A and fig. S11A–C (page unavailable) reports defective TCR-induced AKT Ser473 phosphorylation in HEM1-deficient patient T cells. Our copy does not report the same phosphorylation result in B cells or after IgM, fibronectin, or ICAM-1 stimulation; its ICAM-1 passage concerns binding, not AKT phosphorylation. (LLM, conf=0.87)
Experimental — accuracy not yet measured - cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
The Results section ('Defective B-cell intrinsic survival in murine Hem1-/- B cells'; page unavailable) reports significantly less AKT phosphorylated at Ser473 in patient B cells than in normal donor B cells. It also describes impaired downstream signaling after IgM stimulation, but the passages do not establish reduced Ser473 phosphorylation in patient T cells or after CD3/CD28, fibronectin, or ICAM-1 stimulation. The T-cell Results passage reports impaired proliferation after CD3/CD28 stimulation, not AKT phosphorylation. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Interpretationcitation
Physical interaction between WRC and mTORC subunits suggests direct modulation of kinase or actin polymerization activity.
“suggesting direct modulation of kinase or actin polymerization activity [8, 41].”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The paper’s interaction passage (indexed under Abstract; page unavailable) reports that HEM1, a WRC component, co-immunoprecipitated with the mTORC2 component RICTOR and suggests that HEM1 regulates mTORC2. But it says the interaction likely occurs when HEM1 is outside the WRC; WAVE2 did not co-immunoprecipitate with RICTOR. It therefore does not establish a physical interaction between the assembled WRC and mTORC2 subunits or direct modulation of actin polymerization through that interaction. (LLM, conf=0.87)
Experimental — accuracy not yet measured - cites [41] Liu M, Zhang J, Pinder BD, Liu Q, Wang D, Yao H, et al. WAVE2 suppresses mTOR activation to maintain T cell homeostasis and prevent autoimmunity. Science. 2021;371(6536):eaaz4544. source
- Interpretationcitation
mTORC2 is involved in mechanosensory cytoskeletal signaling cascades influencing cell shape and motility.
“thus strengthening the notion that mTORC2 is involved in mechanosensory cytoskeletal signaling cascades influencing cell shape and motility [44].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [44] Diz-Muñoz A, Thurley K, Chintamen S, Altschuler SJ, Wu LF, Fletcher DA, et al. Membrane tension acts through PLD2 and mTORC2 to limit actin network assembly during neutrophil migration. PLoS Biol. 2016;14(6):e1002474. source
- Premisecitation
Knockdown of HEM1 in pan-T cells followed by reactivation increased soluble granzymes, IFNγ, IL-4, and IL-6.
“Knockdown of HEM1 in pan-T cells and subsequent reactivation resulted in increased levels of soluble granzymes, interferon gamma (IFNγ), IL-4, and IL-6”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The passage discussing IL-2 stimulation (section labeled Abstract; page unavailable) reports that HEM1-knockdown cells hypersecreted granzymes and that reducing HEM1 in primary T cells increased release of cytokines or granule contents. It does not identify IFNγ, IL-4, or IL-6 as increased, or establish the specified pan-T-cell reactivation condition. (LLM, conf=0.82)
Experimental — accuracy not yet measured - cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
The Results section, “Impaired T-cell function in HEM1 deficiency” (page unavailable), reports a hypersecretory Th1-biased phenotype in HEM1-deficient CD4 T-helper memory cells. It does not report HEM1 knockdown and reactivation of pan-T cells or increased soluble granzymes, IFNγ, IL-4, and IL-6 in those cells. The increased IL-6 and IFNγ reported elsewhere in Results were pro-inflammatory markers in Hem1-deficient mice, not measurements from reactivated pan-T cells. (LLM, conf=0.82)
Experimental — accuracy not yet measured
- Premisecitation
Myeloid-specific knockout of Hem1 in mice increased susceptibility to infection and morbidity upon influenza A and Streptococcus pneumoniae challenge.
“Interestingly, myeloid-specific knockout of Hem1 in mice increased susceptibility to infection and morbidity upon influenza A and Streptococcus pneumoniae challenge [36].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [36] Suwankitwat N, Libby S, Liggitt HD, Avalos A, Ruddell A, Rosch JW, et al. The actin-regulatory protein Hem-1 is essential for alveolar macrophage development. J Exp Med. 2021;218(4):e20200472. source
- Premisecitation
HSCT has significant risks of rejection and graft-versus-host disease.
“the significant risks of rejection and graft-versus-host disease after HSCT make autologous gene-modified HSCT an appealing option [52, 53].”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [52] Aiuti A, Biasco L, Scaramuzza S, Ferrua F, Cicalese MP, Baricordi C, et al. Lentiviral hematopoietic stem cell gene therapy in patients with Wiskott-Aldrich syndrome. Science. 2013;341(6148):1233151. source
- cites [53] Boztug K, Schmidt M, Schwarzer A, Banerjee PP, Díez IA, Dewey RA, et al. Stem-cell gene therapy for the Wiskott-Aldrich syndrome. N Engl J Med. 2010;363(20):1918–27. source
The paper’s introductory passage (indexed under Abstract; page unavailable) says allogeneic HSC transplantation for Wiskott–Aldrich syndrome may carry a considerable risk of death or transplantation-related complications. It does not identify rejection or graft-versus-host disease as those complications, so the cited source supports the general risk but not the two specified risks. (LLM, conf=0.84)
Experimental — accuracy not yet measured
- Premisecitation
HEM1 deficiency reduces mTORC activity.
“in vitro data suggesting that HEM1 deficiency reduces mTORC activity [8, 41].”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
- cites [41] Liu M, Zhang J, Pinder BD, Liu Q, Wang D, Yao H, et al. WAVE2 suppresses mTOR activation to maintain T cell homeostasis and prevent autoimmunity. Science. 2021;371(6536):eaaz4544. source
- Findingcitation
Elevated IgE is frequently observed in HEM1-deficient patients, especially in those with asthma or atopic symptoms.
“Elevated IgE is frequently observed, especially in those with asthma or atopic symptoms [8, 10].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The clinical description (indexed under Abstract; page unavailable) reports atopic disease and says the five HEM1-deficient patients sometimes had elevated IgE or IgG. It does not establish that elevated IgE was frequent or especially observed in patients with asthma or atopic symptoms. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
The Clinical phenotype section (page unavailable) reports elevated IgE in patient 1, but normal IgE in patient 2. It does not establish that elevated IgE is frequent among HEM1-deficient patients or that it is especially associated with asthma or atopic symptoms. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Findingcitation
Natural killer cells were either normal or decreased across the HEM1-deficient cohort.
“Natural killer (NK) cells were either normal or decreased across the cohort [8–10].”
Quote in the paperNot a substantial claim3 of 3 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The passage discussing NK-cell measurements (section labeled Abstract; no page provided) reports decreased NK-cell abundance in patients for whom sufficient samples were available. It does not report normal NK-cell counts or establish the pattern across the entire five-patient cohort. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
The Results section on impaired T-cell function reports that invariant natural killer T (iNKT) cells were very low to absent in both patients, but iNKT cells are not the NK cells named in the claim. Searches for “natural killer cells” and “NK cells” found no passage in our copy reporting whether NK-cell counts were normal or decreased. (LLM, conf=0.72)
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
Table 1 in the Clinical phenotype section reports normal-range CD16/CD56 cell counts at the later measurement for both patients. It does not show decreased counts: at the earlier measurement, both patients’ counts were above their respective normal ranges. Thus, the paper supports 'normal' at one time point, but not 'normal or decreased across the cohort' without qualification. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Premisecitation
mTORC2 is activated by increased plasma membrane tension as part of a negative feedback system to limit actin-based cellular protrusions.
“mTORC2 is activated by increased plasma membrane tension as part of a negative feedback system to limit actin-based cellular protrusions”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [44] Diz-Muñoz A, Thurley K, Chintamen S, Altschuler SJ, Wu LF, Fletcher DA, et al. Membrane tension acts through PLD2 and mTORC2 to limit actin network assembly during neutrophil migration. PLoS Biol. 2016;14(6):e1002474. source
- Premisecitation
The HEM2-containing WRC is associated with tumor progression and metastasis in melanoma, non-small cell lung cancer, and breast cancer.
“the HEM2-containing WRC has been broadly implicated in non-immunological diseases and is especially associated with tumor progression and metastasis in melanoma, non-small cell lung cancer, and breast cancer [46–48].”
Quote in the paperNot a substantial claim2 of 3 sources checked- cites [46] Swaminathan K, Campbell A, Papalazarou V, Jaber-Hijazi F, Nixon C, McGhee E, et al. The RAC1 target NCKAP1 plays a crucial role in the progression of Braf;Pten-driven melanoma in mice. J Invest Dermatol. 2021;141(3):628-37.e15. source
- cites [47] Xiong Y, He L, Shay C, Lang L, Loveless J, Yu J, et al. Nck-associated protein 1 associates with HSP90 to drive metastasis in human non-small-cell lung cancer. J Exp Clin Cancer Res. 2019;38(1):122. source
- cites [48] Teng Y, Qin H, Bahassan A, Bendzunas NG, Kennedy EJ, Cowell JK. The WASF3-NCKAP1-CYFIP1 complex is essential for breast cancer metastasis. Cancer Res. 2016;76(17):5133–42. source
The Results section (“Knockdown of NCKAP1 suppresses metastasis in breast cancer cells in vivo”; page unavailable) reports reduced metastasis after NCKAP1 knockdown in a breast-cancer mouse model. The Introduction links WASF3 expression to poor prognosis in non-small cell lung cancer, but does not establish that finding for the HEM2/NCKAP1-containing complex; the paper does not address melanoma. Thus it supports the breast-cancer part, not the claimed association across all three cancers. (LLM, conf=0.87)
Experimental — accuracy not yet measured
- Premisecitation
In vitro studies of activated patient CD8+ T cells revealed hypersecretion of cytotoxic cytokines, including perforin and granzymes A and B.
“Despite failure to properly initiate adaptive responses, in vitro studies of activated patient CD8+ T cells revealed hypersecretion of cytotoxic cytokines, including perforin and granzymes A and B [8].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The paper reports that IL-2-stimulated patient cells hypersecreted perforin and granzymes. But it also reports normal granzyme A, granzyme B, and perforin release from patient CD8+ T cells; the claim does not preserve this distinction between experimental conditions. Both passages are labeled Abstract in our copy, with no page number provided. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Interpretationcitation
Defects in neutrophil, dendritic cell, and macrophage migration and phagocytosis impair innate immune defenses, predisposing HEM1-deficient patients to bacterial infections.
“Like mouse models of HEM1 deficiency, defects in neutrophil, dendritic cell, and macrophage migration and phagocytosis impair innate immune defenses, predisposing patients to bacterial infections [32–35].”
Quote in the paperSubstantial claim4 of 4 sources checked- cites [32] Park H, Staehling-Hampton K, Appleby MW, Brunkow ME, Habib T, Zhang Y, et al. A point mutation in the murine Hem1 gene reveals an essential role for Hematopoietic protein 1 in lymphopoiesis and innate immunity. J Exp Med. 2008;205(12):2899–913. source
The Results section ('Hem1 is required for migration, phagocytosis, and F-actin polymerization in neutrophils'; page unavailable) reports impaired migration and phagocytosis in Hem1-deficient mouse neutrophils and impaired bacterial phagocytosis in mouse macrophages. The Discussion links these defects to impaired innate immune function. This paper does not establish dendritic-cell defects or show that these defects predispose human patients to bacterial infections. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [33] Chan MM, Wooden JM, Tsang M, Gilligan DM, Hirenallur-S DK, Finney GL, et al. Hematopoietic protein-1 regulates the actin membrane skeleton and membrane stability in murine erythrocytes. PLoS ONE. 2013;8(2):e54902. source
The Introduction (page unavailable) reports defects in immune-cell development and function in Hem1-null mice, and the Discussion describes a role for immune-cell actin structures in protection against pathogens. The paper does not establish defects in migration and phagocytosis across all three named cell types or show that HEM1-deficient patients are predisposed to bacterial infections. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [34] Shao L, Chang J, Feng W, Wang X, Williamson EA, Li Y, et al. The Wave2 scaffold Hem-1 is required for transition of fetal liver hematopoiesis to bone marrow. Nat Commun. 2018;9(1):2377. source
The Results section ‘Hem-1−/− FL HSCs can migrate to the BM’ (page unavailable) reports defective migration in neutrophils from Hem-1-deficient mice. It does not establish migration or phagocytosis defects in dendritic cells or macrophages, or show that these defects predispose HEM1-deficient patients to bacterial infections. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [35] Leithner A, Eichner A, Müller J, Reversat A, Brown M, Schwarz J, et al. Diversified actin protrusions promote environmental exploration but are dispensable for locomotion of leukocytes. Nat Cell Biol. 2016;18(11):1253–9. source
The paper’s account of the Figure 2 experiments reports impaired migration and lymphatic-vessel entry by Hem1-deficient mouse dendritic cells. It does not establish neutrophil or macrophage migration defects, phagocytosis defects, or that these changes predispose patients to bacterial infections. (LLM, conf=0.87)
Experimental — accuracy not yet measured
- Premisecitation
Physical interaction between WRC and mTORC subunits was observed.
“physical interaction between WRC and mTORC subunits was observed”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
- cites [41] Liu M, Zhang J, Pinder BD, Liu Q, Wang D, Yao H, et al. WAVE2 suppresses mTOR activation to maintain T cell homeostasis and prevent autoimmunity. Science. 2021;371(6536):eaaz4544. source
- Findingcitation
More than half of HEM1-deficient patients had elevated IgG levels without a clear relationship to autoimmune manifestations.
“More than half of the patients had elevated IgG levels without a clear relationship to autoimmune manifestations [8, 10].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The patient-description passage (labeled Abstract; page unavailable) reports that the five HEM1-deficient patients sometimes had elevated IgG and autoimmune manifestations. It does not establish that more than half had elevated IgG or that IgG levels had no clear relationship to autoimmune manifestations. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
- Interpretationcitation
Reduced integrity of the mechanical actin barrier facilitates vesicular hypersecretion.
“indicating that reduced integrity of the mechanical actin barrier facilitates vesicular hypersecretion [8, 10, 12, 33].”
Quote in the paperSubstantial claim4 of 4 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
- cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
The Results and discussion (page unavailable) report impaired F-actin polymerization in NCKAP1L-deficient T cells and normal or sometimes increased degranulation markers. They do not establish that loss of a mechanical actin barrier causes vesicular hypersecretion; cytotoxicity remained normal under the tested conditions. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [12] Ritter AT, Kapnick SM, Murugesan S, Schwartzberg PL, Griffiths GM, Lippincott-Schwartz J. Cortical actin recovery at the immunological synapse leads to termination of lytic granule secretion in cytotoxic T lymphocytes. Proc Natl Acad Sci U S A. 2017;114(32):E6585–94. source
- cites [33] Chan MM, Wooden JM, Tsang M, Gilligan DM, Hirenallur-S DK, Finney GL, et al. Hematopoietic protein-1 regulates the actin membrane skeleton and membrane stability in murine erythrocytes. PLoS ONE. 2013;8(2):e54902. source
The Results report disrupted organization of the actin membrane skeleton in Hem1-null erythrocytes, and the Discussion links this disruption to reduced membrane stability (page numbers unavailable). The paper does not report vesicular hypersecretion or show that a weakened actin barrier facilitates it. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Interpretationcitation
Diminished cortical actin barriers could explain the higher basal degranulation rates in patient NK cells.
“Diminished cortical actin barriers could also explain the observation that patient NK cells had higher basal degranulation rates [10].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
- Premisecitation
Hem1−/− mice have increased serum levels of IFNγ and IL-6.
“corresponding to increased serum levels of IFNγ and IL-6 observed in Hem1−/− mice [8, 9].”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The section labeled Abstract mentions HEM1-deficient mice only in connection with lymphopenia, neutrophilia, or bone marrow failure. Searches for mouse serum IFNγ and IL-6 found no passage in our copy reporting those measurements; its cytokine findings concern patient or HEM1-knockdown cells instead. (LLM, conf=0.76)
Experimental — accuracy not yet measured - cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
The Results section, “Hem1−/− mice replicate aberrant B-cell development and multifaceted autoimmunity” (page unavailable), reports markedly increased IL-6 and IFNγ in Hem1−/− mice. The passage does not specify that those levels were measured in serum, so it does not establish that part of the claim. (LLM, conf=0.83)
Experimental — accuracy not yet measured
- Premisecitation
Patient NK cells had higher basal degranulation rates.
“patient NK cells had higher basal degranulation rates [10].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
The Results and discussion section reports higher basal degranulation in patient 1’s NK cells. It also says patient 2’s NK cells showed no abnormalities compared with the control, so the finding does not apply to both patients. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Interpretationcitation
Similar defects in B cell immune synapses likely underlie poor antibody responses after vaccination or infection in HEM1-deficient patients.
“Similar defects in B cell immune synapses likely underlie poor antibody responses after vaccination or infection [9, 38].”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
The Results section on B-cell intrinsic survival reports that HEM1-deficient patient B cells spread poorly and form disorganized immunological synapses; the Discussion links these defects to weaker B-cell receptor signaling. The paper does not report poor antibody responses after vaccination or infection, or establish that synapse defects underlie such responses. Searches for vaccination and pathogen-specific antibody responses found no supporting passage. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [38] Lin KB, Freeman SA, Zabetian S, Brugger H, Weber M, Lei V, et al. The rap GTPases regulate B cell morphology, immune-synapse formation, and signaling by particulate B cell receptor ligands. Immunity. 2008;28(1):75–87. source
The Results (page unavailable) show that blocking Rap activation impaired immune-synapse formation in experimental B cells. The paper does not study HEM1-deficient patients or establish that synapse defects underlie their poor antibody responses after vaccination or infection. (LLM, conf=0.87)
Experimental — accuracy not yet measured
- Findingnone given
Episodes of fever can occur in conjunction with lymphadenopathy or hepatosplenomegaly in HEM1-deficient patients.
“Episodes of fever can occur in conjunction with lymphadenopathy or hepatosplenomegaly.”
Quote in the paperNot a substantial claim - Findingnone given
HEM1-deficient patients typically present in the first year of life with dysregulated immune responses leading to a syndrome of immunodeficiency coupled with hyperinflammation, lymphoproliferation, and autoimmunity.
“HEM1-deficient patients typically present in the first year of life with dysregulated immune responses leading to a syndrome of immunodeficiency coupled with hyperinflammation, lymphoproliferation, and autoimmunity (Table 1).”
Quote in the paperNot a substantial claim - Findingown data
Immunophenotypes in affected HEM1-deficient individuals have been variable.
“Immunophenotypes in affected individuals have been variable (Table 1).”
Quote in the paperNot a substantial claim - Findingnone given
Respiratory infections commonly lead to chronic complications including bronchiectasis in HEM1-deficient patients.
“Respiratory infections commonly lead to chronic complications including bronchiectasis.”
Quote in the paperNot a substantial claim - Findingcitation
HEM1-deficient patients have variable immunoglobulin abnormalities.
“Patients have variable immunoglobulin abnormalities.”
Quote in the paperNot a substantial claim - Interpretationreasoning
Tissue specificity of WRC subunits suggests that composition of the WRC alters its regulation and function between different cell types.
“Tissue specificity of subunits suggests that composition of the WRC alters its regulation and function between different cell types.”
Quote in the paperNot a substantial claim - Premisecitation
Small GTPases that cluster at the plasma membrane can activate the WRC.
“Importantly, small GTPases that cluster at the plasma membrane can also activate the WRC.”
Quote in the paperNot a substantial claim - Premisecitation
WRC-activating signals initiate ARP2/3-mediated branched actin polymerization to generate lamellipodia at the cell's leading edge.
“Combined, these WRC-activating signals initiate ARP2/3-mediated branched actin polymerization to generate lamellipodia at the cell’s leading edge (Fig. 1a) [2].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [2] Stradal TE, Rottner K, Disanza A, Confalonieri S, Innocenti M, Scita G. Regulation of actin dynamics by WASP and WAVE family proteins. Trends Cell Biol. 2004;14(6):303–11. source
- Premisecitation
WAVE2 suppressed mTORC1 and mTORC2 activity in immunoprecipitation and in vitro kinase studies.
“Immunoprecipitation and in vitro kinase studies showed that WAVE2 suppressed mTORC1 and mTORC2 activity [41].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [41] Liu M, Zhang J, Pinder BD, Liu Q, Wang D, Yao H, et al. WAVE2 suppresses mTOR activation to maintain T cell homeostasis and prevent autoimmunity. Science. 2021;371(6536):eaaz4544. source
- Interpretationcitation
Autoimmune features in HEM1 deficiency may result from impaired B cell receptor signal strength during germinal center reactions leading to autoantibody production.
“Autoimmune features may result from impaired B cell receptor (BCR) signal strength during germinal center reactions leading to autoantibody production.”
Quote in the paperSubstantial claim - Interpretationreasoning
Insufficient innate and adaptive responses culminate in recurrent infections in HEM1-deficient patients.
“Ultimately, insufficient innate and adaptive responses culminate in recurrent infections in HEM1-deficient patients.”
Quote in the paperSubstantial claim - Premisecitation
In familial HLH in which granules lack functional perforin, CD107a levels are normal or elevated.
“This draws an interesting comparison to the normal or elevated CD107a levels observed in the form of familial HLH in which granules lack functional perforin [28].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [28] Brisse E, Wouters CH, Matthys P. Advances in the pathogenesis of primary and secondary haemophagocytic lymphohistiocytosis: differences and similarities. Br J Haematol. 2016;174(2):203–17. source
- Interpretationreasoning
An overall proinflammatory environment in secondary lymphoid organs, despite impaired specific lymphocyte activation, may explain the hepatomegaly, splenomegaly, and lymphadenopathy observed broadly across patient cohorts.
“An overall proinflammatory environment in secondary lymphoid organs, despite impaired specific lymphocyte activation, may explain the hepatomegaly, splenomegaly, and lymphadenopathy that was observed broadly across patient cohorts.”
Quote in the paperNot a substantial claim- Rests on an assumption: Hepatomegaly, splenomegaly, and lymphadenopathy were observed broadly across patient cohorts.
- Interpretationnone given
Immunoblotting to assess for WRC destabilization has poor sensitivity in detecting variants that inhibit WRC activation without affecting protein levels.
“though this test would have poor sensitivity in detecting variants that inhibit WRC activation without affecting protein levels.”
Quote in the paperSubstantial claim - Premisecitation
In T cell-specific Wave2 knockout mice, loss of WRC components resulted in enhanced mTORC1 and mTORC2 activity.
“loss of WRC components resulted in enhanced mTORC1 and mTORC2 activity in mice [41].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [41] Liu M, Zhang J, Pinder BD, Liu Q, Wang D, Yao H, et al. WAVE2 suppresses mTOR activation to maintain T cell homeostasis and prevent autoimmunity. Science. 2021;371(6536):eaaz4544. source
- Interpretationreasoning
Impaired AKT activation and downstream dysregulation of Foxo1 substrates in Hem1−/− mouse B cells likely contributes to defects in proliferation and survival.
“Impaired AKT activation and downstream dysregulation of Foxo1 substrates in Hem1-/- mouse B cells likely contributes to defects in proliferation and survival.”
Quote in the paperSubstantial claim - Premisecitation
T cell-specific Wave2 knockout mice displayed autoimmunity and cytokine hypersecretion similar to patients.
“a model of T cell–specific Wave2 knockout in mice produced the opposite effect; these mice displayed autoimmunity and cytokine hypersecretion similar to patients”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [41] Liu M, Zhang J, Pinder BD, Liu Q, Wang D, Yao H, et al. WAVE2 suppresses mTOR activation to maintain T cell homeostasis and prevent autoimmunity. Science. 2021;371(6536):eaaz4544. source
- Study design and conductnone given
Subsequent investigations of immune cell population skewing in HEM1-deficient patients were hampered by the use of immunosuppressive medications.
“Subsequent investigations of immune cell population skewing were hampered by the use of immunosuppressive medications (see Therapeutic Perspectives).”
Quote in the paperNot a substantial claim - Interpretationnone given
Functional HEM1 is required for balanced lymphoid lineage hematopoiesis.
“While immunophenotypes at disease presentation vary significantly, functional HEM1 is required for balanced lymphoid lineage hematopoiesis.”
Quote in the paperNot a substantial claim
- May combine two claims. 27
- Classified as probably not a substantial claim. 21
- The quote only partly states this claim. 1
May combine two claims.
PremisecitationHEM1 deficiency was first described in 2019 and has been reported in nine individuals from seven kindreds.
“HEM1 deficiency was first described in 2019 and has been reported in nine individuals from seven kindreds [8–10, 25].”
Quote in the paperNot a substantial claim4 of 4 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured - cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
Split into 2 atoms — 0 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 1 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
Split into 2 atoms — 0 confirmed, 1 partially supported, 1 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Checked by a reasoning model — may be wrong.
Experimental — accuracy not yet measured - cites [25] Comrie WA, Poli MC, Cook SA, Similuk M, Oler AJ, Fauqi AJ, et al. Genetic immunodeficiency and autoimmune disease reveal distinct roles of Hem1 in the WAVE2 and mTORC2 complexes. bioRxiv. 2019. source
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationProlonged pathogen exposure resulting from impaired adaptive immune cell activation contributes to chronic inflammation and HLH development, potentially explaining the HLH-like phenotypes observed in patients.
“Prolonged pathogen exposure resulting from impaired adaptive immune cell activation is known to contribute to chronic inflammation and HLH development, potentially explaining the HLH-like phenotypes observed in patients [28, 42].”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [28] Brisse E, Wouters CH, Matthys P. Advances in the pathogenesis of primary and secondary haemophagocytic lymphohistiocytosis: differences and similarities. Br J Haematol. 2016;174(2):203–17. source
- cites [42] Henter JI, Elinder G, Söder O, Hansson M, Andersson B, Andersson U. Hypercytokinemia in familial hemophagocytic lymphohistiocytosis. Blood. 1991;78(11):2918–22. source
The Discussion (page not supplied) describes active familial HLH as a prominent noninfectious inflammatory reaction and reports prominent T-lymphocyte activation, contrary to the proposed mechanism of prolonged pathogen exposure caused by impaired adaptive immune-cell activation. It instead suggests that prolonged cytokine production may contribute to disease, while stating that the etiology remains unknown. (LLM, conf=0.84)
Checked by a reasoning model — may be wrong.
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationNone of the reported NCKAP1L variants is present in the Exome Variant Server and only two variants (c.1076C > T [p.P359L] and c.1111A > G [p.M371V]) are observed in gnomAD, though there are no healthy homozygotes.
“None of the variants is present in the Exome Variant Server and only two variants (c.1076C > T [p.P359L] and c.1111A > G [p.M371V]) are observed in gnomAD, though there are no healthy homozygotes [26].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [26] Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, et al. The mutational constraint spectrum quantified from variation in 141,456 humans. Nature. 2020;581(7809):434–43. source
The ‘A high-quality catalogue of variation’ section identifies the gnomAD dataset, but the passages found do not report NCKAP1L variants or their genotype counts. Searches for the two variant names, the Exome Variant Server, and healthy homozygotes found no passage addressing the sentence’s specific claims. (LLM, conf=0.78)
Experimental — accuracy not yet measured
Classified as probably not a substantial claim.
PremisecitationDynamic control of actin polymerization is crucial for cellular migration, adhesion, division, membrane transport, and spatiotemporal coordination of signals that govern metabolism and proliferation.
“Dynamic control of actin polymerization is crucial for cellular migration, adhesion, division, membrane transport, and spatiotemporal coordination of signals that govern metabolism and proliferation [1, 2].”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [1] Chen B, Brinkmann K, Chen Z, Pak CW, Liao Y, Shi S, et al. The WAVE regulatory complex links diverse receptors to the actin cytoskeleton. Cell. 2014;156(1–2):195–207. source
The Introduction (page unavailable) says dynamic actin rearrangements are vital to eukaryotic cells and identifies adhesion, migration, and division among the processes involving WAVE proteins. The passages do not establish the claim’s additional links to membrane transport or to spatiotemporal coordination of signals governing metabolism and proliferation. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [2] Stradal TE, Rottner K, Disanza A, Confalonieri S, Innocenti M, Scita G. Regulation of actin dynamics by WASP and WAVE family proteins. Trends Cell Biol. 2004;14(6):303–11. source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationBranched actin is critical for morphological changes during phagocytosis.
“Additionally, branched actin is critical for morphological changes during phagocytosis (Fig. 1d) [20].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [20] Rougerie P, Miskolci V, Cox D. Generation of membrane structures during phagocytosis and chemotaxis of macrophages: role and regulation of the actin cytoskeleton. Immunol Rev. 2013;256(1):222–39. source
May combine two claims.
PremisecitationHEM1 expression is restricted to hematopoietic cells and HEM2 is expressed in all other tissues.
“HEM1 expression is restricted to hematopoietic cells and its counterpart, HEM2, is expressed in all other tissues [16].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [16] Rottner K, Stradal TEB, Chen B. WAVE regulatory complex. Curr Biol. 2021;31(10):R512–7. source
In “Biological/organismic functions” (page unavailable), the paper describes Hem1 as tissue-specific to hematopoietic cells and Nap1 as ubiquitously expressed. “Composition and assembly” identifies Nap1 as Hem2. This supports the broad expression contrast, but not the claim that Hem2 is expressed only in tissues other than hematopoietic cells; ubiquitous expression does not imply that exclusion. (LLM, conf=0.86)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationTensile force generated by polarized F-actin polymerization allows for integrin activation and focal adhesion maturation, both of which are necessary for cellular adhesion and migration through extracellular matrices.
“Tensile force generated by polarized F-actin polymerization allows for integrin activation and focal adhesion maturation, both of which are necessary for cellular adhesion and migration through extracellular matrices (Fig. 1b) [18, 19].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [18] Case LB, Waterman CM. Integration of actin dynamics and cell adhesion by a three-dimensional, mechanosensitive molecular clutch. Nat Cell Biol. 2015;17(8):955–63. source
In “The actin cytoskeleton is a master regulator of FAs” (page not given), the paper links actin flow to local integrin activation and says focal-adhesion maturation requires tension. It does not establish that polarized F-actin polymerization is the sole source of that tension: it also names myosin contractility and extracellular pulling. Its discussion of migration describes other mechanisms, so the claim that integrin activation and focal-adhesion maturation are necessary for migration through extracellular matrices is too broad. (LLM, conf=0.87)
Experimental — accuracy not yet measured - cites [19] Comrie WA, Babich A, Burkhardt JK. F-actin flow drives affinity maturation and spatial organization of LFA-1 at the immunological synapse. J Cell Biol. 2015;208(4):475–91. source
The Introduction and Discussion report that force from centripetal F-actin flow promotes LFA-1 activation and T cell–APC adhesion at the immunological synapse. The paper does not establish that this force drives focal adhesion maturation or that those processes are necessary for migration through extracellular matrices. No page numbers are available in our copy. (LLM, conf=0.88)
Experimental — accuracy not yet measured
May combine two claims.
FindingcitationHEM1-deficient patients may have systemic lupus erythematosus-like disease with positive anti-nuclear antibodies and double-stranded DNA autoantibodies, and associated immune complex glomerulonephritis.
“Patients may have systemic lupus erythematosus–like disease with positive anti-nuclear antibodies (ANA) and double-stranded (ds) DNA autoantibodies, and associated immune complex glomerulonephritis [8–10].”
Quote in the paperNot a substantial claim3 of 3 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The patient-description passage (indexed as Abstract; page unavailable) reports autoimmune manifestations in HEM1-deficient patients. It does not identify lupus-like disease, positive ANA or anti-dsDNA antibodies, or immune-complex glomerulonephritis; searches for those specific features found no supporting passage in our copy. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
In Results (Identification of human HEM1 deficiency; page unavailable), the paper reports that one HEM1-deficient patient had glomerulonephritis, tested positive for anti-dsDNA antibodies, and was diagnosed with SLE. It does not report a positive ANA test or establish that this patient's glomerulonephritis was immune-complex mediated; the explicit immune-complex glomerulonephritis finding in Results concerns Hem1-deficient mice, not patients. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
The Clinical phenotype section reports a high antinuclear antibody titer in patient 1, and the Immunological phenotype section describes a B-cell finding associated with lupus. However, the Clinical phenotype table records anti-dsDNA antibodies as negative in both patients, and the passages do not report immune-complex glomerulonephritis. (LLM, conf=0.88)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationARP2/3-mediated actin polymerization drives cell spreading at immunological synapses and shapes the complex architectures that enable efficient antigen presentation and lymphocyte activation.
“ARP2/3-mediated actin polymerization drives cell spreading at immunological synapses and shapes the complex architectures that enable efficient antigen presentation and lymphocyte activation (Fig. 1e) [12, 22, 23].”
Quote in the paperNot a substantial claim3 of 3 sources checked- cites [12] Ritter AT, Kapnick SM, Murugesan S, Schwartzberg PL, Griffiths GM, Lippincott-Schwartz J. Cortical actin recovery at the immunological synapse leads to termination of lytic granule secretion in cytotoxic T lymphocytes. Proc Natl Acad Sci U S A. 2017;114(32):E6585–94. source
The Results section (page not available) describes a ring-like actin structure at the cytotoxic T-cell synapse, supporting a role for actin dynamics in synapse architecture. But the paper does not establish that ARP2/3-mediated polymerization drives cell spreading or that these structures enable efficient antigen presentation and lymphocyte activation. (LLM, conf=0.79)
Experimental — accuracy not yet measured - cites [22] Dupré L, Boztug K, Pfajfer L. Actin dynamics at the T cell synapse as revealed by immune-related actinopathies. Front Cell Dev Biol. 2021;9:665519. source
The section on cellular-scale synapse control says actin polymerization sustains T-cell spreading over an antigen-presenting cell. The section on ARPC1B deficiency links Arp2/3 to lamellipodial architecture, synapse assembly, and T-cell function. These passages support the spreading, architecture, and lymphocyte-activation aspects, but do not establish that Arp2/3-mediated T-cell actin dynamics makes antigen presentation itself more efficient. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [23] Hammer JA, Wang JC, Saeed M, Pedrosa AT. Origin, organization, dynamics, and function of actin and actomyosin networks at the T cell immunological synapse. Annu Rev Immunol. 2019;37:201–24. source
The dSMAC section (page unavailable) says Arp2/3 creates a branched actin network that drives T-cell spreading at the immunological synapse. The TCR microcluster signaling section (page unavailable) links that network’s flow to T-cell signaling. The paper does not establish the further claim that these architectures enable efficient antigen presentation; its account focuses on the T-cell side of the synapse. (LLM, conf=0.86)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationPathogenic variants in NCKAP1L, a hematopoietically restricted gene encoding the HEM1 protein component of the WRC, define a novel disease involving recurrent bacterial and viral infections, autoimmunity, and excessive inflammation (OMIM 141180).
“Recently, three reports investigating novel mutations in NCKAP1L, a hematopoietically restricted gene encoding the HEM1 protein component of the WAVE regulatory complex (WRC), established how improper actin networks lead to a clinical syndrome involving recurrent bacterial and viral infections and autoimmunity (OMIM 141180) [8–10].”
Quote in the paperSubstantial claim3 of 3 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
- cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
Split into 2 atoms — 1 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing).
FindingcitationAutoimmune thrombocytopenia in one HEM1-deficient patient occurred after measles, mumps, and rubella vaccination.
“Autoimmune thrombocytopenia in one patient occurred after measles, mumps, and rubella vaccination [8].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The patient-description passage (section labeled Abstract; page unavailable) mentions autoimmune manifestations among the HEM1-deficient patients, but does not identify thrombocytopenia or a vaccination preceding it. Searches for thrombocytopenia and for measles, mumps, and rubella vaccination found no passage addressing the reported event. (LLM, conf=0.72)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationUpon cellular stimulation, the WRC is recruited to the plasma membrane to communicate with central signaling molecules including PI3K, MAPK, FAK, AKT, and PKC; these effectors govern activation, growth, proliferation, and survival.
“Upon cellular stimulation, the WRC is recruited to the plasma membrane to communicate with central signaling molecules including phosphatidylinositol-3 kinases (PI3K), mitogen-activated protein kinases (MAPK), focal adhesion kinase (FAK), protein kinase B/AKT, and protein kinase C. These effectors subsequently govern activation, growth, proliferation, and survival [16, 24].”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [16] Rottner K, Stradal TEB, Chen B. WAVE regulatory complex. Curr Biol. 2021;31(10):R512–7. source
The Regulation mechanisms section (page unavailable) says the WRC moves to the plasma membrane during activation and interacts with signaling ligands. It does not identify PI3K, MAPK, FAK, AKT, and PKC as WRC partners or say that these effectors subsequently govern activation, growth, proliferation, and survival. Its mention of PIP3 does not establish an interaction with PI3K. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [24] Moujaber O, Stochaj U. The cytoskeleton as regulator of cell signaling pathways. Trends Biochem Sci. 2020;45(2):96–107. source
Probably not a substantial claim: may not pass S3 (load-bearing).
FindingcitationFailure to thrive was noted in two HEM1-deficient patients.
“Failure to thrive was noted in two patients [8, 9].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The patient-description passage in our copy (labeled Abstract; page unavailable) identifies five HEM1-deficient patients and lists infections, atopy, and inflammatory manifestations, but does not mention failure to thrive. Searches for “failure to thrive,” poor growth, weight gain, and growth retardation found no passage establishing that two patients had this finding. (LLM, conf=0.72)
Experimental — accuracy not yet measured - cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
In Results, “Identification of human HEM1 deficiency” (page unavailable), the paper reports failure to thrive in patient P1, with height and weight below the third percentile. It describes a second HEM1-deficient patient, P2, but does not report failure to thrive for her. This source therefore supports one patient, not two. (LLM, conf=0.90)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationThe p.M371V substitution drastically reduced WRC activation by the upstream GTPase ARF1, thus impairing WRC function without destabilizing the complex.
“By contrast, the p.M371V substitution drastically reduced WRC activation by the upstream GTPase ARF1, thus impairing WRC function without destabilizing the complex [8].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
FindingcitationOne HEM1-deficient patient has been described with lymphadenitis after Bacillus Calmette-Guerin vaccination, but this occurred after initiation of steroids.
“One patient has been described with lymphadenitis after Bacillus Calmette-Guerin vaccination, but this occurred after initiation of steroids [10].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
May combine two claims.
FindingcitationNaïve CD8+ T cell populations were low in HEM1-deficient patients, and no consistent pattern has been observed with CD8+ memory cells.
“Naïve CD8+ T cell populations were low, and no consistent pattern has been observed with CD8+ memory cells [8–10].”
Quote in the paperNot a substantial claim3 of 3 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The available patient T-cell passage (labeled Abstract; page unavailable) discusses activation, proliferation, and CD8+ cytotoxicity, but not naïve or memory CD8+ cell counts. Searches for naïve CD8+ cells, memory CD8+ cells, and lymphocyte-subset markers found no passage addressing either claimed pattern. (LLM, conf=0.72)
Experimental — accuracy not yet measured - cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
The Results section ('Impaired T-cell function in HEM1 deficiency'; page unavailable) reports normal total CD8+ T-cell numbers and elevated relative percentages of central memory and exhausted effector memory cells. It does not state whether naïve CD8+ cells were low or describe a pattern specifically for CD8+ memory cells. Searches for naïve CD8+ cells and CD8+ memory-cell patterns found no passage settling either point. (LLM, conf=0.70)
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
In the Clinical phenotype table (Table 1), naïve CD8+ T-cell percentages are low in both patients relative to their reference ranges. But the Immunological phenotype section reports increased percentages of CD8+ memory subsets, rather than concluding that CD8+ memory cells show no consistent pattern; the table does show variation between patients for central and effector memory subsets. (LLM, conf=0.85)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationA dense ring of branched actin surrounds the cytosol, creating a barrier at the cell cortex that regulates vesicle secretion.
“Additionally, a dense ring of branched actin surrounds the cytosol, creating a barrier at the cell cortex that regulates vesicle secretion [11–13].”
Quote in the paperNot a substantial claim3 of 3 sources checked- cites [11] Porat-Shliom N, Milberg O, Masedunskas A, Weigert R. Multiple roles for the actin cytoskeleton during regulated exocytosis. Cell Mol Life Sci. 2013;70(12):2099–121. source
The 'Anchoring site for the secretory vesicles and barrier function' section (page unavailable) describes cortical actin as a thick meshwork that can act as a barrier between secretory vesicles and the plasma membrane. It does not describe that meshwork as branched or as a ring surrounding the cytosol; the actin ring it mentions is at an NK-cell immunological synapse and delimits an area of granule fusion. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [12] Ritter AT, Kapnick SM, Murugesan S, Schwartzberg PL, Griffiths GM, Lippincott-Schwartz J. Cortical actin recovery at the immunological synapse leads to termination of lytic granule secretion in cytotoxic T lymphocytes. Proc Natl Acad Sci U S A. 2017;114(32):E6585–94. source
The introductory passage (page unavailable) describes a dense cortical actin meshwork that envelops the cytosol, and the Discussion says recovered cortical actin acts as a barrier to lytic granule secretion in cytotoxic T lymphocytes. Our copy does not establish that this actin is branched; it describes a meshwork rather than a ring. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [13] Wollman R, Meyer T. Coordinated oscillations in cortical actin and Ca2+ correlate with cycles of vesicle secretion. Nat Cell Biol. 2012;14(12):1261–9. source
The Abstract describes a peripheral actin cortex that acts as a mechanical barrier to secretory vesicles, and the Results show that changing cortical actin affects secretion. Our copy does not describe it as a dense ring of branched actin surrounding the cytosol, so those structural details are unsupported. (LLM, conf=0.85)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationThe HEM1/2 and CYFIP1/2 subunits of the WRC are structurally homologous and form a heterodimer with a flat, polybasic surface that facilitates plasma membrane association.
“The HEM1/2 and CYFIP1/2 subunits of the WRC are structurally homologous and form a heterodimer with a flat, polybasic surface that facilitates plasma membrane association [1].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [1] Chen B, Brinkmann K, Chen Z, Pak CW, Liao Y, Shi S, et al. The WAVE regulatory complex links diverse receptors to the actin cytoskeleton. Cell. 2014;156(1–2):195–207. source
The Introduction (page unavailable) identifies HEM1/2 as Nap1 variants and CYFIP1/2 as Sra1 variants, and describes Sra1 and Nap1 as homologous proteins that form a dimer. The passages found do not describe that dimer as having a flat, polybasic surface that facilitates plasma membrane association; the Results instead show membrane recruitment through receptor interactions. (LLM, conf=0.86)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
InterpretationcitationInterstitial lung disease is described in HEM1-deficient patients without a clear etiology but may be related to viral infections or chronic inflammation.
“Interstitial lung disease is also described without a clear etiology but may be related to viral infections or chronic inflammation [8, 27].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The passage describing the five patients (section labeled Abstract; page unavailable) reports respiratory infections, pneumonia, bronchiectasis, and inflammatory disease, but does not describe interstitial lung disease. Searches for interstitial lung disease and for a viral or inflammatory etiology found no passage linking either proposed cause to that condition. (LLM, conf=0.73)
Experimental — accuracy not yet measured - cites [27] Azadeh N, Limper AH, Carmona EM, Ryu JH. The role of infection in interstitial lung diseases: a review. Chest. 2017;152(4):842–52. source
The Abstract (page unavailable) says some ILDs have unknown causes and that infection may play a role; the Idiopathic Pulmonary Fibrosis > Viruses section (page unavailable) discusses possible viral contributions. The paper does not describe ILD in HEM1-deficient patients, and its description of chronic inflammation as a feature of NSIP does not establish it as a cause in those patients. (LLM, conf=0.86)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationDisruption of CYFIP2 and its interaction with FMRP causes a neurodevelopmental disorder characterized by intellectual disability and seizures.
“Disruption of CYFIP2 and its interaction with Fragile X Mental Retardation Protein (FMRP) is known to cause a neurodevelopmental disorder characterized by intellectual disability and seizures [49].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [49] Begemann A, Sticht H, Begtrup A, Vitobello A, Faivre L, Banka S, et al. New insights into the clinical and molecular spectrum of the novel CYFIP2-related neurodevelopmental disorder and impairment of the WRC-mediated actin dynamics. Genet Med. 2021;23(3):543–54. source
The Introduction and Discussion link disease-associated CYFIP2 variants to a neurodevelopmental disorder involving intellectual disability and seizures. The Discussion says the variants disturb WRC-mediated actin regulation, but explicitly states that their effect on the CYFIP2–FMRP interaction has not been studied. The claimed disruption of that interaction as a cause is therefore unsupported. (LLM, conf=0.91)
Experimental — accuracy not yet measured
May combine two claims.
InterpretationcitationHEM1-deficient T cells fail to properly integrate antigen signals and fully activate because T cell immune synapses are highly dependent on ARP2/3-mediated F-actin polymerization.
“Because T cell immune synapses are highly dependent on ARP2/3-mediated F-actin polymerization [12, 22, 23, 37], HEM1-deficient T cells fail to properly integrate antigen signals and fully activate.”
Quote in the paperSubstantial claim3 of 4 sources checked- cites [12] Ritter AT, Kapnick SM, Murugesan S, Schwartzberg PL, Griffiths GM, Lippincott-Schwartz J. Cortical actin recovery at the immunological synapse leads to termination of lytic granule secretion in cytotoxic T lymphocytes. Proc Natl Acad Sci U S A. 2017;114(32):E6585–94. source
The Discussion (page unavailable in our copy) links actin dynamics at cytotoxic T-cell synapses to TCR signaling and lytic-granule secretion, supporting the general importance of actin at the synapse. It does not identify ARP2/3-mediated F-actin polymerization as the mechanism on which synapses depend. The HEM1-deficiency conclusion follows the citations and is the citing authors’ inference, not a finding attributed to this source. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [22] Dupré L, Boztug K, Pfajfer L. Actin dynamics at the T cell synapse as revealed by immune-related actinopathies. Front Cell Dev Biol. 2021;9:665519. source
- cites [23] Hammer JA, Wang JC, Saeed M, Pedrosa AT. Origin, organization, dynamics, and function of actin and actomyosin networks at the T cell immunological synapse. Annu Rev Immunol. 2019;37:201–24. source
- cites [37] Nolz JC, Gomez TS, Zhu P, Li S, Medeiros RB, Shimizu Y, et al. The WAVE2 complex regulates actin cytoskeletal reorganization and CRAC-mediated calcium entry during T cell activation. Curr Biol. 2006;16(1):24–34. source
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationWAVE2 is directly modulated by LRRK2 in microglia, establishing a potentially pathogenic role in Parkinson disease.
“Recently, WAVE2 was found to be directly modulated by leucine rich repeat kinase 2 (LRRK2) in microglia, establishing a potentially pathogenic role in development of Parkinson disease [50].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [50] Kim KS, Marcogliese PC, Yang J, Callaghan SM, Resende V, Abdel-Messih E, et al. Regulation of myeloid cell phagocytosis by LRRK2 via WAVE2 complex stabilization is altered in Parkinson’s disease. Proc Natl Acad Sci U S A. 2018;115(22):E5164–73. source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationmTORC2 modulates cell morphology via PKCα signaling.
“It was initially shown that mTORC2 modulates cell morphology via PKCα signaling [43].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [43] Sarbassov DD, Ali SM, Kim DH, Guertin DA, Latek RR, Erdjument-Bromage H, et al. Rictor, a novel binding partner of mTOR, defines a rapamycin-insensitive and raptor-independent pathway that regulates the cytoskeleton. Curr Biol. 2004;14(14):1296–302. source
May combine two claims.
FindingcitationOne HEM1-deficient patient displayed selective IgA deficiency in the context of celiac disease while others displayed mildly elevated IgA levels.
“One patient displayed selective IgA deficiency in the context of celiac disease while others displayed mildly elevated IgA levels [8, 10].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The patient-description passage (section labeled Abstract; page unavailable) reports poor specific antibody responses and sometimes elevated IgE or IgG, but does not address IgA levels or celiac disease. Searches for selective IgA deficiency, elevated IgA, and celiac disease found no passage supporting the attributed patient-level claim. (LLM, conf=0.74)
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
The Clinical phenotype section and Table 1 report elevated IgA in both NCKAP1L-deficient patients, supporting the elevated-IgA portion of the claim. They do not report selective IgA deficiency or celiac disease; the section describes patient 2’s IgA elevation as massive, not mild. (LLM, conf=0.90)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationHEM1-deficient T cells show reduced CD25 and CD69 upregulation and poor proliferative responses after TCR engagement in vitro.
“This manifests as reduced CD25 and CD69 upregulation and poor proliferative responses in patient cells after TCR engagement in vitro [8, 9].”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
- cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationAn alternative NCKAP1L splice form is expressed in biliary epithelial cells and promotes intrahepatic biliary tree morphogenesis.
“A recent report demonstrated expression of an alternative NCKAP1L splice form in biliary epithelial cells promotes intrahepatic biliary tree morphogenesis [51].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [51] Ghaffari K, Pierce LX, Roufaeil M, Gibson I, Tae K, Sahoo S, et al. NCK-associated protein 1 like (nckap1l) minor splice variant regulates intrahepatic biliary network morphogenesis. PLoS Genet. 2021;17(3):e1009402. source
May combine two claims.
PremisecitationNumerous Hem1-deficient mouse models demonstrated systemic autoimmunity and inflammation parallel to that seen in patients, including splenomegaly, immune complex lupus glomerulonephritis, elevated proinflammatory markers (IL-6, IFNγ, and MRP8/14), and autoreactive plasmablasts with elevated serum dsDNA autoantibodies.
“Numerous Hem1-deficient mouse models demonstrated systemic autoimmunity and inflammation parallel to that seen in patients, including splenomegaly, immune complex lupus glomerulonephritis, elevated proinflammatory markers (IL-6, IFNγ, and MRP8/14), and autoreactive plasmablasts with elevated serum dsDNA autoantibodies [9, 41].”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [9] Salzer E, Zoghi S, Kiss MG, Kage F, Rashkova C, Stahnke S, et al. The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Sci Immunol. 2020;5(49):eabc3979. source
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured - cites [41] Liu M, Zhang J, Pinder BD, Liu Q, Wang D, Yao H, et al. WAVE2 suppresses mTOR activation to maintain T cell homeostasis and prevent autoimmunity. Science. 2021;371(6536):eaaz4544. source
May combine two claims.
PremisecitationMultiple investigations found elevated surface CD107a levels after CD8+ T cell degranulation and lower cortical actin thickness.
“Multiple investigations found elevated surface CD107a levels after CD8 + T cell degranulation and lower cortical actin thickness”
Quote in the paperSubstantial claim4 of 4 sources checked- cites [8] Cook SA, Comrie WA, Poli MC, Similuk M, Oler AJ, Faruqi AJ, et al. HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease. Science. 2020;369(6500):202–7. source
The passage on HEM1-deficient patient cells (section labeled Abstract; page unavailable) reports reduced cortical F-actin and higher surface CD107a on T cells, especially after induced degranulation. It does not specify that the CD107a finding was in CD8+ T cells or report a measurement of cortical actin thickness; it describes reduced F-actin instead. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [10] Castro CN, Rosenzwajg M, Carapito R, Shahrooei M, Konantz M, Khan A, et al. NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation. J Exp Med 2020; 217(12):e20192275. source
The Results and discussion section on T-cell activation reports that, after strong stimulation, cytotoxic T cells from two patients had normal or even increased surface CD107a—not uniformly elevated levels. The section on impaired actin polymerization describes abnormal synapse and leading-edge formation, but does not report reduced cortical actin thickness; it says basal F-actin content in resting T cells did not differ from controls. Page numbers are unavailable in our copy. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [12] Ritter AT, Kapnick SM, Murugesan S, Schwartzberg PL, Griffiths GM, Lippincott-Schwartz J. Cortical actin recovery at the immunological synapse leads to termination of lytic granule secretion in cytotoxic T lymphocytes. Proc Natl Acad Sci U S A. 2017;114(32):E6585–94. source
The paper’s ‘Cortical Actin Recovery Correlates with Lytic Granule Secretion’ section reports reduced cortical actin density before granule fusion, but says actin recovers after degranulation. It tracks secretion with LAMP1-EGFP rather than reporting elevated surface CD107a, and it does not measure actin thickness. The actin–secretion relationship is supported, but the marker, measurement, and implied post-degranulation timing are not. (LLM, conf=0.82)
Experimental — accuracy not yet measured - cites [33] Chan MM, Wooden JM, Tsang M, Gilligan DM, Hirenallur-S DK, Finney GL, et al. Hematopoietic protein-1 regulates the actin membrane skeleton and membrane stability in murine erythrocytes. PLoS ONE. 2013;8(2):e54902. source
The Results passage concerns actin-related protein changes in Hem1-deficient murine erythrocytes, not CD8+ T cells. Searches for CD107a, CD8+ T-cell degranulation, and cortical actin thickness found no passage addressing the claimed findings; the Discussion’s general statement about actin polymerization in immune cells does not establish them. (LLM, conf=0.76)
Experimental — accuracy not yet measured
May combine two claims.
FindingcitationAutoimmunity and hyperinflammation are commonly observed in HEM1-deficient patients.
“Autoimmunity and hyperinflammation are commonly observed in HEM1-deficient patients.”
Quote in the paperNot a substantial claimMay combine two claims.
Premisenone givenBranched actin networks are required for cell spreading and immune synapse formation, lamellipodia formation, endo- and exocytosis, and phagocytosis.
“By contrast, branched actin networks are required for cell spreading and immune synapse formation, lamellipodia formation, endo- and exocytosis, and phagocytosis (Fig. 1).”
Quote in the paperSubstantial claimClassified as probably not a substantial claim.
Premisenone givenBranched actin is polymerized by the ARP2/3 complex after stimulation by the Wiskott-Aldrich Syndrome protein family of actin nucleation promoting factors, which includes the WAVE proteins.
“Branched actin is polymerized by the ARP2/3 complex after stimulation by the Wiskott-Aldrich Syndrome protein (WASp) family of actin NPFs, which includes the WASp family verprolin homologous (WAVE) proteins.”
Quote in the paperSubstantial claimMay combine two claims.
Premisenone givenThese HEM1 amino acid substitutions destabilize the entire complex, causing subsequent degradation of all WRC subunits.
“These HEM1 amino acid substitutions destabilize the entire complex, causing subsequent degradation of all WRC subunits.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationWAVE2 is ubiquitously expressed and is the predominant form in hematopoietic cell lineages, while WAVE1 and WAVE3 expression is limited to neural tissues.
“WAVE2 is ubiquitously expressed and is the predominate form in hematopoietic cell lineages, while WAVE1 and WAVE3 expression is limited to neural tissues [15].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [15] Suetsugu S, Miki H, Takenawa T. Identification of two human WAVE/SCAR homologues as general actin regulatory molecules which associate with the Arp2/3 complex. Biochem Biophys Res Commun. 1999;260(1):296–302. source
Classified as probably not a substantial claim.
Premisenone givenThe WAVE regulatory complex mediates branched actin polymerization, a process required for key cellular functions including migration, phagocytosis, vesicular transport, and immune synapse formation.
“The WAVE regulatory complex (WRC) mediates branched actin polymerization, a process required for key cellular functions including migration, phagocytosis, vesicular transport, and immune synapse formation.”
Quote in the paperSubstantial claimMay combine two claims.
Premisenone givenAll reported pathogenic variants in the 31-exon NCKAP1L gene on chromosome 12 (NM_005337.5) segregated with disease and followed autosomal recessive inheritance patterns.
“All reported pathogenic variants in the 31-exon NCKAP1L gene on chromosome 12 (NM_005337.5) segregated with disease and followed autosomal recessive inheritance patterns (Fig. 2).”
Quote in the paperSubstantial claimClassified as probably not a substantial claim. May combine two claims.
Premisenone givenWAVE isoforms are the scaffold of the WRC, an obligate heteropentameric complex containing HEM1/2, CYFIP1/2, HSPC300, and ABI1/2.
“WAVE isoforms are the scaffold of the WRC, an obligate heteropentameric complex containing the additional subunits: hematopoietic protein 1/2 (HEM1/2), cytoplasmic FMR1 interacting protein 1/2 (CYFIP1/2), hematopoietic stem/progenitor cell protein 300 (HSPC300), and Abelson interactor 1/2 (ABI1/2).”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing), S4 (based).
Premisenone givenIn human immune cells, formin proteins polymerize G-actin into linear filamentous actin bundles to generate filopodia, which are protruding structures required for chemosensation.
“In human immune cells, formin proteins polymerize G-actin into linear filamentous actin (F-actin) bundles to generate filopodia, which are protruding structures required for chemosensation.”
Quote in the paperNot a substantial claimThe quote only partly states this claim.
InterpretationreasoningPoor pathogen clearance, accumulation of debris, and excess cytokine production by alveolar macrophages may predispose HEM1-deficient patients to recurrent infections and long-term lung injury.
“Poor pathogen clearance, accumulation of debris, and excess cytokine production by alveolar macrophages may predispose patients to recurrent infections and long-term lung injury.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing), S4 (based).
InterpretationreasoningHSCT would likely rescue HEM1 in all relevant hematopoietic cell lineages.
“would likely rescue HEM1 in all relevant hematopoietic cell lineages.”
Quote in the paperNot a substantial claim- Rests on an assumption: HSCT is a known treatment for other hematopoietic actinopathies such as WAS and DOCK8 deficiency.
Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based).
Interpretationnone givenThe clinical benefit of sirolimus in some patients is possibly attributable to reduced immune cell activation and proliferation in pro-inflammatory settings.
“the clinical benefit of sirolimus in some patients is possibly attributable to reduced immune cell activation and proliferation in pro-inflammatory settings.”
Quote in the paperNot a substantial claim- Rests on an assumption: Corticosteroids and other immune suppressants such as sirolimus were clinically effective in controlling lymphoproliferation, autoimmunity, and auto-inflammatory symptoms.
Probably not a substantial claim: may not pass S3 (load-bearing).
InterpretationreasoningThe diversity of immunophenotypic changes in HEM1-deficient patients may be due to alterations of lymphocyte ontogeny and mature cell differentiation, as well as differences in genetics, epigenetic changes, and pathogen exposures.
“This diversity of changes may be due to alterations of lymphocyte ontogeny and mature cell differentiation, as well as differences in genetics, epigenetic changes, and pathogen exposures.”
Quote in the paperNot a substantial claim
The paper relies on this without support.
Hepatomegaly, splenomegaly, and lymphadenopathy were observed broadly across patient cohorts.
“hepatomegaly, splenomegaly, and lymphadenopathy that was observed broadly across patient cohorts.”
The paper relies on this without support.
Corticosteroids and other immune suppressants such as sirolimus were clinically effective in controlling lymphoproliferation, autoimmunity, and auto-inflammatory symptoms.
“Corticosteroids and other immune suppressants such as sirolimus were clinically effective in controlling lymphoproliferation, autoimmunity, and auto-inflammatory symptoms.”
The paper relies on this without support.
Clinical responses to steroids were variable; one patient was successfully weaned off, but most required chronic steroids, azathioprine, or mycophenolate mofetil for long-term immune suppression.
“Clinical responses to steroids were variable; one patient was successfully weaned off, but most required chronic steroids, azathioprine, or mycophenolate mofetil for long-term immune suppression.”
The paper relies on this without support.
Rituximab led to partial resolution of renal disease in one patient with nephrotic syndrome.
“Rituximab was initiated in one patient during an acute exacerbation of nephrotic syndrome, leading to partial resolution of renal disease.”
The paper relies on this without support.
HSCT is a known treatment for other hematopoietic actinopathies such as WAS and DOCK8 deficiency.
“HSCT is a known treatment for other hematopoietic actinopathies such as WAS and DOCK8 deficiency”
The paper relies on this without support.
There are no data currently available for outcomes of HSCT in HEM1-deficient patients.
“there are no data currently available for outcomes of HSCT in HEM1-deficient patients, including in some follow-up discussions regarding reported patients.”
The paper relies on this without support.
HEM1 deficiency is the first reported WRC-related immunodeficiency.
“since HEM1 deficiency is the first reported WRC-related immunodeficiency”
The paper relies on this without support.
Some data suggest HEM1 may exist in pools outside of the WRC.
“some data suggest that HEM1 may exist in pools outside of the WRC.”
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
Each contradiction between two passages listed here was confirmed by an independent check.
p.M371V is described as both destabilizing and non-destabilizing
MinorThe genetics section includes p.M371V among destabilizing substitutions, but later states that it impairs WRC function without destabilizing the complex.
“Most are biallelic missense variants resulting in destabilizing amino acid substitutions: p.R129W in exon 4, p.V141F in exon 5, p.R258L in exon 7, and p.P359L and p.M371V in exon 11 [8, 9].”
“By contrast, the p.M371V substitution drastically reduced WRC activation by the upstream GTPase ARF1, thus impairing WRC function without destabilizing the complex [8].”
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Zhao, X., Zhao, Y., Zhang, Y., Fan, Q., Ke, H., Chen, X., Jin, L., Tang, H., Jiang, Y., & Ma, J. (2024) · Figshare · doi:10.6084/m9.figshare.26384542
Thalhammer, J., Bruno, B., Latour, S., Fournier, B., & Chahla, W. A. (2026) · Journal of Human Immunity · doi:10.70962/jhi.20250228
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- Authors
- Cook, S., Lenardo, M. J., & Freeman, A. F.
- Affiliations
- National Institutes of Health (US)
- Vanderbilt University (US)
- Corresponding author
- Lenardo, Michael J.
- Freeman, Alexandra F.
- Venue
- Journal of Clinical Immunology
- Published
- 2022-07-22
- Volume
- 42
- Issue
- 8
- Pages
- 1583-1592
- ISSN
- 0271-9142 (ISSN-L)
- 1573-2592
- PMC
- PMC9700602
- OpenAlex
- W4286615375
- Semantic Scholar
- 168156de9ca6ced141de1c14d1be70e228974cf4
- Cited by
- 24
- References
- 53
- Citations by year
- 2026: 3 · 2025: 6 · 2024: 10 · 2023: 5
- FWCI
- 0.55
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Locations
- Journal of Clinical Immunology (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Funders
- Division of Intramural Research, National Institute of Allergy and Infectious Diseases
- National Institutes of Health
- National Institute of Allergy and Infectious Diseases
- NHLBI Division of Intramural Research
- Topics
- Life Sciences › Immunology and Microbiology › Immunology › Immunodeficiency and Autoimmune Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Blood disorders and treatments
- Life Sciences › Immunology and Microbiology › Immunology › Neutrophil, Myeloperoxidase and Oxidative Mechanisms
- Keywords
- WAVE regulatory complex, branched actin polymerization, actin dynamics, primary immunodeficiency, autoimmunity, genotype-phenotype correlation, hematopoietic cells, immune synapse formation, phagocytosis
- MeSH terms
- Actins, Genotype, Humans, Membrane Proteins, Phagocytosis, Phenotype, Autoimmunity
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-11-02.
Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-11-02.
Cited sources are checked by gpt-6-sol.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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