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The indigenous gastrointestinal microflora
Abstract
The indigenous gastrointestinal (GI) tract microflora has profound effects on the anatomical, physiological and immunological development of the host. The indigenous microflora stimulates the host immune system to respond more quickly to pathogen challenge and, through bacterial antagonism, inhibits colonization of the GI tract by overt exogenous pathogens. Indigenous GI bacteria are also opportunistic pathogens and can translocate across the mucosal barrier to cause systemic infection in debilitated hosts.
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“Saliva contains 109 bacteria per milliliter, with the bacteria present in saliva being shed from the tongue, cheeks, and dental and gingival plaque.197”
From The oral microbiome: Role of key organisms and complex networks in oral health and disease (2021) · cites this paper as [197]
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“dietary carcinogens and synthesis of biotin, folate, and K vitamins.(4,24) Clinicians treating IBD throughout much of the past”
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“Number of patients 42 Median age (years; range) 62 (32–85) Gender, n (%) Male 26 (62) Female 16 (38) Histological differentiation, n (%) Well 4 (10) Well-mod 2 (5) Mod 18 (43) Mod-poor 11 (26) Poor 5 (12) NOS/other 2 (5) Tumor site, n (%) Tongue 9 (21) Larynx 12 (29) Tonsil 8 (19) Floor of mouth 3 (7) Oral cavity 4 (1…”
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“Total microbial numbers and some microbial species were similar to those in the normal duodenum, such as streptococci, bifidobacteria, and lactobacilli (2).”
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Shanahan, F. (2007) · Inflammatory Bowel Diseases · doi:10.1002/ibd.3780060208 · Cited by 65
Olson, M. L., Jayaraman, A., & Kao, K. C. (2018) · Applied and Environmental Microbiology · doi:10.1128/aem.02769-17 · Cited by 73
Scarpellini, E., Campanale, M., Leone, D., Purchiaroni, F., Vitale, G., Lauritano, E. C., & Gasbarrini, A. (2010) · Internal and Emergency Medicine · doi:10.1007/s11739-010-0450-1 · Cited by 64
“Moreover, at least an half of microbial species detected in diluted stool samples by microscope cannot be cultivated with the common culture media [ 2 , 3].”
BackgroundInfluentialBacterial Signaling at the Intestinal Epithelial Interface in Inflammation and Cancer
Coleman, O. I., & Haller, D. (2018) · Frontiers in Immunology · doi:10.3389/fimmu.2017.01927 · Cited by 66
“Gastroenterology (2011) 141(1):227–36.”
BackgroundInfluentialToll-Like Receptors: Sentinels of Host Defence against Bacterial Infection
Schnare, M., Röllinghoff, M., & Qureshi, S. T. (2005) · International Archives of Allergy and Immunology · doi:10.1159/000090001 · Cited by 64
“This situation most clearly exists in the gastro-intestinal tract where the normal bacterial flora, despite vastly outnumbering the cells of the gut mucosa that it colonizes, contributes to the overall well-being of the host [”
BackgroundRatajczak, M., Laroche, E., Berthe, T., Clermont, O., Pawlak, B., Denamur, É., & Petit, F. (2010) · BMC Microbiology · doi:10.1186/1471-2180-10-222 · Cited by 63
“coli is a commensal bacterium of the gastro-intestinal tract of humans and vertebrate animals [8,9].”
BackgroundThe role of the commensal microbiota in adaptive and maladaptive stressor-induced immunomodulation
Mackos, A. R., Maltz, R. M., & Bailey, M. T. (2016) · Hormones and Behavior · doi:10.1016/j.yhbeh.2016.10.006 · Cited by 63
Coprophagous behavior of rabbit pups affects implantation of cecal microbiota and health status1
Combes, S., Gidenne, T. N., Cauquil, L., Bouchez, O., & Fortun‐Lamothe, L. (2014) · Journal of Animal Science · doi:10.2527/jas.2013-6394 · Cited by 67
Srikanth, C. V., & McCormick, B. A. (2008) · Interdisciplinary Perspectives on Infectious Diseases · doi:10.1155/2008/626827 · Cited by 69
“The intestinal microflora also makes important metabolic contributions by producing vitamin K, folate, and shortchain fatty acids (a major energy source for enterocytes), and mediates the breakdown of dietary carcinogens as well [2, 17].”
BackgroundFåk, F., Ahrné, S., Molin, G., Jeppsson, B. W., & Weström, B. R. (2007) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00023.2007 · Cited by 62
“In animals without a microflora, the intestinal weight and surface area are decreased (3).”
BackgroundBurns, S. M., Olomu, I. N., Zhao, H. F., Wong, R. J., Stevenson, D. K., & Contag, C. H. (2005) · Pediatric Research · doi:10.1203/01.pdr.0000157725.44213.c4 · Cited by 61
“Although this resistance may be due to a protective role of resident microflora by inhibition of colonization (32,36), recent evidence implicates that indigenous microbes may also modulate the expression of host genes from intestinal cells such as Paneth cells (37–39), which are an important component of gut innate im…”
BackgroundStratification and compartmentalisation of immunoglobulin responses to commensal intestinal microbes
Macpherson, A. J., & McCoy, K. D. (2013) · Seminars in Immunology · doi:10.1016/j.smim.2013.09.004 · Cited by 60
Microecology, obesity, and probiotics
Tennyson, C. A., & FRIEDMAN, G. J. (2008) · Current Opinion in Endocrinology Diabetes and Obesity · doi:10.1097/med.0b013e328308dbfb · Cited by 60
Song, D., Peng, Q., Chen, Y., Zhou, X., Zhang, F., Li, A., Huang, D., Wu, Q., Ye, Y., He, H., et al. (2017) · Scientific Reports · doi:10.1038/s41598-017-17830-z · Cited by 61
Maleki‐Ravasan, N., Ahmadi, N., Soroushzadeh, Z., Raz, A. A., Zakeri, S., & Djadid, N. D. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.00505 · Cited by 60
“Enterococcus faecalis is a Gram-positive and commensal bacterium of the human/animal digestive tract (Berg, 1996; Ryan et al., 2003).”
BackgroundGuo, L., Tang, J., Tang, M., Luo, S., & Zhou, X. Y. (2023) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2219634120 · Cited by 60
Bollrath, J., & Powrie, F. M. (2013) · Science · doi:10.1126/science.1242674 · Cited by 60
Tanoue, T., & Honda, K. (2011) · Seminars in Immunology · doi:10.1016/j.smim.2011.11.009 · Cited by 62
“Indeed, some Lactobacillus species are only transiently present (allochthonous) and do not usually exist in the intestines of certain mice or humans [106].”
BackgroundProbiotics and prebiotics — renaissance of a therapeutic principle
Fric, P. (2007) · Open Medicine · doi:10.2478/s11536-007-0031-5 · Cited by 61
“The system comprises approximately 400 various species of microbes with a total of about 10(14) prokaryotic organisms, which is 10times more than the total number of eukaryotic cells of the human body [1].”
BackgroundXiao, H. Q., Yin, W., Ma, K., Gulen, M. F., Zhou, H., Sham, H. P., Jacobson, K., Vallance, B. A., & Li, X. (2010) · Gastroenterology · doi:10.1053/j.gastro.2010.04.043 · Cited by 60
Effect of polydextrose on intestinal microbes and immune functions in pigs
Fava, F., Mäkivuokko, H., Siljander-Rasi, H., Putaala, H., Tiihonen, K., Stowell, J. D., Tuohy, K. M., Gibson, G. R., & Rautonen, N. (2007) · British Journal Of Nutrition · doi:10.1017/s0007114507691818 · Cited by 62
“As in man, the large intestine of pigs is the anatomical region most heavily and diversely populated by bacteria, with over 400 different bacterial species and in concentrations ranging from 1010 to 1012 microbial cells per g intestinal contents (Ewing & Cole, 1994; Berg, 1996).”
BackgroundImpact of the Intestinal Microbiota on the Development of Mucosal Defense
Gaskins, H. R., Croix, J. A., Nakamura, N., & Nava, G. M. (2008) · Clinical Infectious Diseases · doi:10.1086/523336 · Cited by 60
“Importantly, bacterial cells outnumber animal cells by a factor of 10 and have a profound influence on immunological, nutritional, physiological, and protective processes in the host [3, 17, 18, 20-23].”
BackgroundNeijat, M., Habtewold, J. Z., Shirley, R. B., Welsher, A., Barton, J., Thiery, P., & Kiarie, E. G. (2019) · Applied and Environmental Microbiology · doi:10.1128/aem.00402-19 · Cited by 61
Esworthy, R. S., Binder, S., Doroshow, J. H., & Chu, F.-F. (2003) · Biological Chemistry · doi:10.1515/bc.2003.067 · Cited by 60
“The huge growth in the ileum from 3 to 5 weeks of age could create new niches for microflora, which in turn influence cell division kinetics in the crypts (Berg, 1996).”
BackgroundHaworth, S. E., White, K. S., Côté, S. D., & Shafer, A. B. A. (2019) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiz095 · Cited by 59
Maintenance of gut microbiome stability for optimum intestinal health in pigs – a review
Upadhaya, S. D., & Kim, I. H. (2022) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/s40104-022-00790-4 · Cited by 66
“These bacteria which inhabit the gastro intestinal tract (GIT) from birth significantly impact animal health, since they protect against the pathogens forming a key barrier, provide essential nutrients to the host from fermentation processes [7, 8] and play a pivotal role in maintaining the host physiological homeosta…”
BackgroundYacon (Smallanthus Sonchifolius): A Food with Multiple Functions
Paula, H. A. D. A., Abranches, M. V., & Ferreira, C. L. D. L. F. (2013) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2011.645259 · Cited by 58
“They assume this role not only to facilitate the exclusion of potential pathogens by competition, but also to modulate the immune system, increasing defenses of the host (Berg, 1996; Lomax and Calder, 2009a; Saulnier et al., 2009).”
BackgroundEcological Characterization of the Colonic Microbiota of Normal and Diarrheic Dogs
Bell, J. A., Kopper, J. J., Turnbull, J. A., Barbu, N. I., Murphy, A. J., & Mansfield, L. S. (2008) · Interdisciplinary Perspectives on Infectious Diseases · doi:10.1155/2008/149694 · Cited by 58
“Adding to complexity during analysis are the sheer numbers of GI organisms, which can reach a density of 10(12) organisms/gram of feces, with a total gut population of 10(14)–10(15) microbes [28].”
BackgroundTargeting the gut microbiota by dietary nutrients: A new avenue for human health
Li, D., Wang, P., Wang, P., Hu, X., & Chen, F. (2017) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2017.1363708 · Cited by 60
“The gut microbiota contains abundant bacterial species with diverse structural composition of LPS (Berg 1996).”
Background
Metadata
- Authors
- Berg, R.
- Affiliations
- Louisiana State University (US)
- Corresponding author
- Berg, R
- Venue
- Trends in Microbiology
- Publisher
- Elsevier BV
- Published
- 1996-11
- Volume
- 4
- Issue
- 11
- Pages
- 430-435
- ISSN
- 0966-842X (ISSN-L)
- OpenAlex
- W2087484128
- Cited by
- 1,153
- References
- 17
- Citations by year
- 2026: 12 · 2025: 24 · 2024: 24 · 2023: 27 · 2022: 34 · 2021: 45 · 2020: 50 · 2019: 56 · 2018: 41 · 2017: 59 · 2016: 54 · 2015: 42 · 2014: 59 · 2013: 39 · 2012: 54
- FWCI
- 3.03
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Trends in Microbiology (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Life Sciences › Agricultural and Biological Sciences › Food Science › Probiotics and Fermented Foods
- Health Sciences › Nursing › Nutrition and Dietetics › Infant Nutrition and Health
- Keywords
- gastrointestinal tract, host-pathogen interaction, bacterial antagonism, colonization resistance, opportunistic pathogens, mucosal barrier, systemic infection, host-microbe interactions
- MeSH terms
- Animals, Digestive System, Ecology, Humans, Mouth, Bacterial Physiological Phenomena
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