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The indigenous gastrointestinal microflora
Abstract
The indigenous gastrointestinal (GI) tract microflora has profound effects on the anatomical, physiological and immunological development of the host. The indigenous microflora stimulates the host immune system to respond more quickly to pathogen challenge and, through bacterial antagonism, inhibits colonization of the GI tract by overt exogenous pathogens. Indigenous GI bacteria are also opportunistic pathogens and can translocate across the mucosal barrier to cause systemic infection in debilitated hosts.
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“Saliva contains 109 bacteria per milliliter, with the bacteria present in saliva being shed from the tongue, cheeks, and dental and gingival plaque.197”
From The oral microbiome: Role of key organisms and complex networks in oral health and disease (2021) · cites this paper as [197]
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Cites
Human Fecal Flora: The Normal Flora of 20 Japanese-Hawaiians
Moore, W. E. C., & Holdeman, L. V. (1974) · Applied Microbiology · doi:10.1128/am.27.5.961-979.1974 · Cited by 1,144
Colonization resistance of the digestive tract in conventional and antibiotic-treated mice
van der Waaij, D., Vries, J. M. B.-D., & der Wees, J. E. C. L.-V. (1971) · Journal of Hygiene · doi:10.1017/s0022172400021653 · Cited by 907
Berg, R. D., & Garlington, A. W. (1979) · Infection and Immunity · doi:10.1128/iai.23.2.403-411.1979 · Cited by 845
Self-citationPrevention of antibiotic-associated diarrhea by Saccharomyces boulardii: A prospective study
Surawicz, C. M., Elmer, G. W., Speelman, P., McFarland, L. V., Chinn, J., & van Belle, G. (1989) · Gastroenterology · doi:10.1016/0016-5085(89)91613-2 · Cited by 570
Human intestinal microflora in health and disease
(1985) · Food and Chemical Toxicology · doi:10.1016/0278-6915(85)90079-1 · Cited by 429
(1976) · Food and Cosmetics Toxicology · doi:10.1016/s0015-6264(76)80265-9 · Cited by 392
Endotoxemia and Bacteremia During Hemorrhagic Shock The Link Between Trauma and Sepsis?
Rush, B. F., Sori, A., Murphy, T. F., Smith, S. M. R., Flanagan, J. J., & Machiedo, G. W. (1988) · Annals of Surgery · doi:10.1097/00000658-198805000-00009 · Cited by 383
INDIGENOUS, NORMAL, AND AUTOCHTHONOUS FLORA OF THE GASTROINTESTINAL TRACT
Dubos, R. J., Schaedler, R. W., Costello, R. L., & Hoet, P. P. (1965) · The Journal of Experimental Medicine · doi:10.1084/jem.122.1.67 · Cited by 319
Survival and Implantation of Escherichia coli in the Intestinal Tract
Freter, R., Brickner, H., Fekete, J., Vickerman, M. M., & Carey, K. E. (1983) · Infection and Immunity · doi:10.1128/iai.39.2.686-703.1983 · Cited by 318
Simple Intestinal Obstruction Causes Bacterial Translocation in Man
Deitch, E. A. (1989) · Archives of Surgery · doi:10.1001/archsurg.1989.01410060065013 · Cited by 279
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McCracken, V. J., & Lorenz, R. G. (2001) · Cellular Microbiology · doi:10.1046/j.1462-5822.2001.00090.x · Cited by 314
“The mammalian GI tract harbours a dense and diverse community of bacteria, containing up to 1 1014 colonyforming units (CFUs) of bacteria, some 10 times the amount of host cells (Berg, 1996).”
BackgroundGut bacteria and health foods—the European perspective
Saarela, M., Lähteenmäki, L., Crittenden, R. G., Salminen, S., & Mattila, T. (2002) · International Journal of Food Microbiology · doi:10.1016/s0168-1605(02)00235-0 · Cited by 315
“Members of the microbiota that have been commonly cultured from faecal samples include isolates of Bacteroides, Clostridium, Eubacterium, Ruminococcus, Fusobacterium, Bifidobacterium, Peptostreptococcus, Lactobacillus, Enterococcus, Peptococcus, Enterobacter and Veillonella (Finegold et al., 1974; Moore and Holdeman,…”
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Kim, H. B., & Isaacson, R. E. (2015) · Veterinary Microbiology · doi:10.1016/j.vetmic.2015.03.014 · Cited by 314
Isolauri, E., Salminen, S., & Ouwehand, A. C. (2004) · Best Practice & Research Clinical Gastroenterology · doi:10.1016/j.bpg.2003.10.006 · Cited by 315
Relationship of prebiotics and food to intestinal microflora
Blaut, M. (2002) · European Journal of Nutrition · doi:10.1007/s00394-002-1102-7 · Cited by 307
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Shanahan, F. (2002) · Best Practice & Research Clinical Gastroenterology · doi:10.1053/bega.2002.0342 · Cited by 308
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Laugerette, F., Vors, C., Géloën, A., Chauvin, M., Soulage, C. O., Lambert-Porcheron, S., Peretti, N., Alligier, M., Burcelin, R., Laville, M., et al. (2010) · The Journal of Nutritional Biochemistry · doi:10.1016/j.jnutbio.2009.11.011 · Cited by 304
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BackgroundIsolauri, E. (2001) · American Journal of Clinical Nutrition · doi:10.1093/ajcn/73.6.1142s · Cited by 290
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Immune responses that adapt the intestinal mucosa to commensal intestinal bacteria
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Olano-Martin, E., Gibson, G. R., & Rastall, R. A. (2002) · Journal of Applied Microbiology · doi:10.1046/j.1365-2672.2002.01719.x · Cited by 288
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BackgroundAn integrative view of microbiome-host interactions in inflammatory bowel diseases
Wlodarska, M., Kostic, A. D., & Xavier, R. J. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2015.04.008 · Cited by 287
“There is a widespread belief that the duodenum and jejunum harbor less than 105 bacteria per gram of luminal content, and that this number increases in the ileum to up to 107 bacteria per gram of luminal content, with further increases in the colon (Berg, 1996; Mowat and Agace, 2014).”
BackgroundBiologic Therapy for Inflammatory Bowel Disease
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Chellan, P., & Sadler, P. J. (2015) · Philosophical Transactions of the Royal Society A Mathematical Physical and Engineering Sciences · doi:10.1098/rsta.2014.0182 · Cited by 287
“are more than 10 times as many bacterial cells as human cells in the body [3,4].”
BackgroundChen, Y., Cui, W., Xiao, L., & Yang, H. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.761981 · Cited by 293
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BackgroundMetabolic activities and probiotic potential of bifidobacteria
Russell, D. A., Ross, R. P., Fitzgerald, G. F., & Stanton, C. (2011) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2011.06.003 · Cited by 274
Heikkinen, J., Vielma, J., Kemiläinen, O., Tiirola, M. A., Eskelinen, P., Kiuru, T., Navia‐Paldanius, D., & von Wright, A. (2006) · Aquaculture · doi:10.1016/j.aquaculture.2006.07.012 · Cited by 263
“With mammals the bacterial densities, especially in colon can reach up to 1012 cfu/g intestinal content (Berg, 1996; Drasar and Hill, 1974).”
BackgroundPrevalence of Bacteroides and Prevotella spp. in ulcerative colitis
Lucke, K., Miehlke, S., Jacobs, E., & Schuppler, M. (2006) · Journal of Medical Microbiology · doi:10.1099/jmm.0.46198-0 · Cited by 262
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BackgroundThe gut microbiota is a major regulator of androgen metabolism in intestinal contents
Colldén, H., Landin, A., Wallenius, V., Elebring, E., Fändriks, L., Nilsson, M. E., Ryberg, H., Poutanen, M., Sjögren, K., Vandenput, L., et al. (2019) · American Journal of Physiology-Endocrinology and Metabolism · doi:10.1152/ajpendo.00338.2019 · Cited by 257
“The number of bacteria and the metabolic capacity of the GM are higher in the cecum and colon compared with the small intestine (10).”
BackgroundHuber, I., Spanggaard, B., Appel, K., Rossen, L., Nielsen, T., & Gram, L. (2003) · Journal of Applied Microbiology · doi:10.1046/j.1365-2672.2003.02109.x · Cited by 259
“For many ecosystems it has been shown that only a fraction of the total number of bacteria present in the sample can be cultured (Amann et al. 1995; Berg 1996) or that cultivation-based identification can be biased because of media selectivity (Wagner et al. 1994; Amann et al. 1995).”
BackgroundCaesar, R., Fåk, F., & Bäckhed, F. (2010) · Journal of Internal Medicine · doi:10.1111/j.1365-2796.2010.02270.x · Cited by 254
Intestinal fungi are causally implicated in microbiome assembly and immune development in mice
Bernardes, E. V. T., Pettersen, V. K., Gutierrez, M. W., Laforest‐Lapointe, I., Jendzjowsky, N. G., Cavin, J., Vicentini, F., Keenan, C. M., Ramay, H. R., Samara, J., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-16431-1 · Cited by 254
Quorum sensing in Escherichia coli and Salmonella
Walters, M., & Sperandio, V. (2006) · International Journal of Medical Microbiology · doi:10.1016/j.ijmm.2006.01.041 · Cited by 246
“1013 )b y at least an order of magnitude ( Berg, 1996 ).”
BackgroundDysbiotic Events in Gut Microbiota: Impact on Human Health
Schippa, S., & Conte, M. (2014) · Nutrients · doi:10.3390/nu6125786 · Cited by 256
“colon” [17], the highest recorded for any microbial habitat.”
BackgroundDevelopment of functional ingredients for gut health
Puupponen‐Pimiä, R., Aura, A., Oksman‐Caldentey, K., Myllärinen, P., Saarela, M., Mattila‐Sandholm, T., & Poutanen, K. S. (2002) · Trends in Food Science & Technology · doi:10.1016/s0924-2244(02)00020-1 · Cited by 244
“(Beng, 1996).”
Importance of microbial colonization of the gut in early life to the development of immunity
Kelly, D., King, T. P., & Aminov, R. I. (2007) · Mutation research. Fundamental and molecular mechanisms of mutagenesis · doi:10.1016/j.mrfmmm.2007.03.011 · Cited by 249
“9% of colonic bacteria are obligate anaerobes) and aerobic conditions estimated that the microbiota of the human adult gut is represented by at least 400 cultivable bacterial species [14,15].”
BackgroundPHYTOPHAGOUS INSECT–MICROBE MUTUALISMS AND ADAPTIVE EVOLUTIONARY DIVERSIFICATION
Janson, E. M., Stireman, J. O., Singer, M. S., & Abbot, P. (2008) · Evolution · doi:10.1111/j.1558-5646.2008.00348.x · Cited by 244
“…as preventing the colonization of pathogenic microbes by either mass action or active involvement in immune reactions (Dillon and Charnley 1988; Berg 1996; Six 2003; Ferrari et al. 2004; Loker et al. 2004; Scarborough et al. 2005); synthesizing various compounds and small molecules used by…”
BackgroundCândido, F. G., Valente, F. X., Grześkowiak, Ł., Moreira, A. P. B., Rocha, D. M. U. P., & Alfenas, R. D. C. G. (2017) · International Journal of Food Sciences and Nutrition · doi:10.1080/09637486.2017.1343286 · Cited by 248
Waidmann, M., Bechtold, O., Frick, J.-S., Lehr, H.-A., Schubert, S., Dobrindt, U., Loeffler, J., Bohn, E., & Autenrieth, I. B. (2003) · Gastroenterology · doi:10.1016/s0016-5085(03)00672-3 · Cited by 234
Wang, X., Heazlewood, S. P., Krause, D. O., & Florin, T. H. (2003) · Journal of Applied Microbiology · doi:10.1046/j.1365-2672.2003.02005.x · Cited by 235
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BackgroundBioaccessibility and bioavailability of phenolic compounds
Shahidi, F., & Peng, H. (2018) · Journal of Food Bioactives · doi:10.31665/jfb.2018.4162 · Cited by 253
Healthy Human Gastrointestinal Microbiome: Composition and Function After a Decade of Exploration
Ruan, W. H., Engevik, M. A., Spinler, J. K., & Versalovic, J. A. (2020) · Digestive Diseases and Sciences · doi:10.1007/s10620-020-06118-4 · Cited by 256
“Important physiologic conditions like pH, bile content, and transit time vary along the GI tract and contribute to distinct microbial communities inhabiting the upper and lower GI tract [30].”
BackgroundCariveau, D. P., Powell, J. E., Koch, H., Winfree, R., & Moran, N. A. (2014) · The ISME Journal · doi:10.1038/ismej.2014.68 · Cited by 234
“Core bacteria may have evolved in close association with hosts and are potentially commensal or beneficial (Berg, 1996; Martinson et al., 2011; Koch et al., 2013).”
BackgroundAntibiotic therapy attenuates colitis in interleukin 10 gene–deficient mice
Madsen, K. L., Doyle, J. S. G., Tavernini, M. M., Jewell, L. D., Rennie, R. P., & Fedorak, R. N. (2000) · Gastroenterology · doi:10.1016/s0016-5085(00)70362-3 · Cited by 232
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Dillon, R. J., & Charnley, A. K. (2002) · Research in Microbiology · doi:10.1016/s0923-2508(02)01361-x · Cited by 231
Romero, J., & Navarrete, P. (2006) · Microbial Ecology · doi:10.1007/s00248-006-9037-9 · Cited by 226
“One important attribute of gastrointestinal microbiota is that bacterial components must be present in the majority of healthy individuals [6] and represent populations that are readily stable over time [4, 23].”
BackgroundAntimicrobial potential of four Lactobacillus strains isolated from breast milk
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BackgroundPhylogenetic background and habitat drive the genetic diversification of Escherichia coli
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Eren, A. M., Zozaya, M., Taylor, C. M., Dowd, S. E., Martin, D. H., & Ferris, M. J. (2011) · PLoS ONE · doi:10.1371/journal.pone.0026732 · Cited by 220
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BackgroundThe function of gut microbiota in immune-related neurological disorders: a review
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“The human gut is an elaborate microbial ecosystem where 10(14) bacteria are established within the first year of life [1, 2].”
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Steinhart, A. H., Feagan, B. G., Wong, C. J., Vandervoort, M. K., Mikolainis, S., Croitoru, K., Seidman, E. G., Leddin, D. J., Bitton, A., Drouin, É., et al. (2002) · Gastroenterology · doi:10.1053/gast.2002.34225 · Cited by 215
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D’Mello, C., & Swain, M. G. (2016) · Current topics in behavioral neurosciences · doi:10.1007/7854_2016_37 · Cited by 226
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Kalliomäki, M. A., & Isolauri, E. (2003) · Current Opinion in Allergy and Clinical Immunology · doi:10.1097/00130832-200302000-00003 · Cited by 211
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He, F., Wu, C., Li, P., Li, N., Zhang, D., Zhu, Q., Ren, W., & Peng, Y. (2018) · BioMed Research International · doi:10.1155/2018/9171905 · Cited by 216
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Lecointre, G., Rachdi, L., Darlu, P., & Denamur, É. (1998) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a025895 · Cited by 209
The intestinal epithelial barrier: How to distinguish between the microbial flora and pathogens
Magalhaes, J. G., Tattoli, I., & Girardin, S. E. (2007) · Seminars in Immunology · doi:10.1016/j.smim.2006.12.006 · Cited by 228
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Mountzouris, K. C., McCartney, A. L., & Gibson, G. R. (2002) · British Journal Of Nutrition · doi:10.1079/bjnbjn2002563 · Cited by 213
Zarepour, M., Bhullar, K., Montero, M., Ma, C., Huang, T., Velcich, A., Xia, L., & Vallance, B. A. (2013) · Infection and Immunity · doi:10.1128/iai.00854-13 · Cited by 206
“For example, mucus can provide attachment sites for pathogenic bacteria (37, 38), as well as providing an energy/food source for adherent bacteria (39, 40).”
BackgroundToll‐like receptors and their role in periodontal health and disease
Mahanonda, R., & Pichyangkul, S. (2007) · Periodontology 2000 · doi:10.1111/j.1600-0757.2006.00179.x · Cited by 208
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Klapper, I., & Dockery, J. D. (2010) · SIAM Review · doi:10.1137/080739720 · Cited by 198
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BackgroundProbiotics and Inflammatory Bowel Disease: Is There a Scientific Rationale?
Shanahan, F. (2000) · Inflammatory Bowel Diseases · doi:10.1097/00054725-200005000-00007 · Cited by 214
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Macpherson, A. J., & Uhr, T. (2004) · Annals of the New York Academy of Sciences · doi:10.1196/annals.1309.005 · Cited by 197
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Dionísio, F., Matić, I., Radman, M., Rodrigues, O. R., & Taddéi, F. (2002) · Genetics · doi:10.1093/genetics/162.4.1525 · Cited by 196
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Chang, A. H., & Parsonnet, J. (2010) · Clinical Microbiology Reviews · doi:10.1128/cmr.00012-10 · Cited by 202
Knowles, S. R., Nelson, E. A., & Palombo, E. A. (2008) · Biological Psychology · doi:10.1016/j.biopsycho.2007.09.010 · Cited by 192
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Ahmed, I., Roy, B. C., Khan, S., Septer, S. S., & Umar, S. (2016) · Microorganisms · doi:10.3390/microorganisms4020020 · Cited by 199
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BackgroundRomero, J., Ringø, E., & Merrifield, D. L. (2014) · Aquaculture Nutrition · doi:10.1002/9781118897263.ch4 · Cited by 191
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Paepe, M. D., Leclerc, M., Tinsley, C. R., & Petit, M. (2014) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2014.00039 · Cited by 186
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BackgroundMattila, H. R., Ríos, D., Walker-Sperling, V. E. K., Roeselers, G., & Newton, I. L. G. (2012) · PLoS ONE · doi:10.1371/journal.pone.0032962 · Cited by 188
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Scupham, A. J., Presley, L. L., Wei, B., Bent, E., Griffith, N., McPherson, M., Zhu, F., Oluwadara, O., Rao, N. P., Braun, J. G., et al. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.72.1.793-801.2006 · Cited by 185
“Standard indigenous bacteria appear to be involved in both the development of a normal gut immune system and, in the case of inflammatory bowel disease, the induction of inappropriate inflammatory responses (8, 41, 50, 57).”
BackgroundDoes Soil Contribute to the Human Gut Microbiome?
Blum, W. E. H., Zechmeister‐Boltenstern, S., & Keiblinger, K. M. (2019) · Microorganisms · doi:10.3390/microorganisms7090287 · Cited by 199
“Also, short transit times in the small intestine limit bacterial reproduction [13].”
BackgroundAdaptation of Bacteria to the Intestinal Niche: Probiotics and Gut Disorder
Dunne, C. P. (2001) · Inflammatory Bowel Diseases · doi:10.1097/00054725-200105000-00010 · Cited by 183
Intestinal microbiota and type 2 diabetes: From mechanism insights to therapeutic perspective
Han, J.-L., & Lin, H. (2014) · World Journal of Gastroenterology · doi:10.3748/wjg.v20.i47.17737 · Cited by 188
High polyphenol, low probiotic diet for weight loss because of intestinal microbiota interaction
Rastmanesh, R. (2010) · Chemico-Biological Interactions · doi:10.1016/j.cbi.2010.10.002 · Cited by 180
“Indeed, the terminal ileum is said to represent a transition zone between the aerobic microflora found in the proximal gut and the anaerobic organisms found in the colon [67].”
BackgroundBacterial Cell-to-Cell Signaling in the Gastrointestinal Tract
Kaper, J. B., & Sperandio, V. (2005) · Infection and Immunity · doi:10.1128/iai.73.6.3197-3209.2005 · Cited by 177
“The commensal flora has a number of benefits for the host, including nutritional contributions, protection from infection, maturation of the immune system, and maturation of the intestinal mucosa (5).”
BackgroundMolecular biological methods for studying the gut microbiota: the EU human gut flora project
Blaut, M., COLLINS, M. D., Welling, G. W., Dore, J. M., Loo, J. V., & de Vos, W. M. (2002) · British Journal Of Nutrition · doi:10.1079/bjn/2002539 · Cited by 176
“Micro-organisms resident in the human intestinal tract influence host physiology including gut metabolism, regulation of epithelial cell growth and immune function (Rowland, 1988; Cummings & Macfarlane, 1997; Berg, 1996).”
BackgroundInflammatory bowel disease: new insights into pathogenesis and treatment
Ardizzone, S., & Porro, G. B. (2002) · Journal of Internal Medicine · doi:10.1046/j.1365-2796.2002.01067.x · Cited by 175
Intestinal Microbiota During Infancy and Its Implications for Obesity
Reinhardt, C., Reigstad, C. S., & Bäckhed, F. (2009) · Journal of Pediatric Gastroenterology and Nutrition · doi:10.1097/mpg.0b013e318183187c · Cited by 180
“The adult human intestine contains an order of magnitude more bacteria than we have human cells in our bodies (1,2).”
BackgroundSize doesn’t matter: towards a more inclusive philosophy of biology
O’Malley, M. A., & Dupré, J. (2007) · Biology & Philosophy · doi:10.1007/s10539-006-9031-0 · Cited by 176
“12The metabolic activity of just the gastrointestinal bacteria in a human is believed to be equal to that of the liver – the most metabolically active organ in the human body (Berg 1996).”
BackgroundInfluentialChen, L., Li, J., Zhu, W., Kuang, Y., Liu, T., Zhang, W., Chen, X., & Peng, C. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.589726 · Cited by 175
“…microbes Frontiers in Microbiology | www.frontiersin.org 1 December 2020 | Volume 11 | Article 589726 colonize, harboring an estimated 1014 bacterial cells (Savage, 1977), followed by the skin, which harbors approximately two orders of magnitude fewer bacterial cells than the colon (Berg, 1996).”
BackgroundThe evolution of a conjugative plasmid and its ability to increase bacterial fitness
Dionísio, F., Conceição, I. C., Marques, A. C., Fernandes, L., & Gordo, I. (2005) · Biology Letters · doi:10.1098/rsbl.2004.0275 · Cited by 173
“…July 2004 Accepted 18 October 2004 250 different species, genera, or even to different kingdoms (Amabile-Cuevas & Chicurel 1992; Courvalin et al. 1995), which is of major concern since bacteria often share the habitat with hundreds of other bacterial species (e.g. in human gut or skin; Berg 1996).”
BackgroundDefensive microbial symbionts in H ymenoptera
Kaltenpoth, M., & Engl, T. (2013) · Functional Ecology · doi:10.1111/1365-2435.12089 · Cited by 172
“…long been hypothesized that an important function of the native gut microbiota of insects is to competitively inhibit pathogens from colonizing the gut (Berg 1996; Dillon & Dillon 2004), especially as the gut represents one of the most sensitive entry routes for pathogens (Siva-Jothy et al. 2005).”
BackgroundDuPont, H. L. (2014) · Alimentary Pharmacology & Therapeutics · doi:10.1111/apt.12728 · Cited by 171
Holobionts and the ecology of organisms: Multi-species communities or integrated individuals?
Skillings, D. (2016) · Biology & Philosophy · doi:10.1007/s10539-016-9544-0 · Cited by 184
“Other nearby physiological views rest on the fact that symbionts are either critical for host development, or make something of the host work, that is, realize or help realize an important physiological function (See, for example, Bocci 1992, Berg 1996, Xu and Gordon 2003)3.”
BackgroundProbiotic Effects on Inflammatory Bowel Disease1,
Sheil, B., Shanahan, F., & O’Mahony, L. (2007) · The Journal of Nutrition · doi:10.1093/jn/137.3.819s · Cited by 167
Rajoka, M. S. R., Shi, J., Mehwish, H. M., Zhu, J., Li, Q., Shao, D., Huang, Q., & Yang, H. (2017) · Food Science and Human Wellness · doi:10.1016/j.fshw.2017.07.003 · Cited by 174
“The human gut microbiota s composed of both anaerobic and aerobic microbial comunities [13].”
BackgroundNeeser, J., Granato, D., Rouvet, M., Servin, A. L., Teneberg, S., & Karlsson, K. ‐. (2000) · Glycobiology · doi:10.1093/glycob/10.11.1193 · Cited by 165
“It is more and more recognized that the resident microflora of the gastrointestinal tract plays an important role in inhibiting gut colonization by incoming pathogens (Tancrede, 1992; Berg, 1996 ).”
BackgroundColistin and rifampicin in the treatment of multidrug-resistant Acinetobacter baumannii infections
Bassetti, M., Repetto, E. C., Righi, E., Boni, S., Diverio, M., Molinari, M. P., Mussap, M., Artioli, S., Ansaldi, F., Durando, P., et al. (2007) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dkm509 · Cited by 162
Gut microbiota composition correlates with changes in body fat content due to weight loss
Remely, M., Tesar, I., Hippe, B., Gnauer, S., Rust, P., & Haslberger, A. G. (2015) · Beneficial Microbes · doi:10.3920/bm2014.0104 · Cited by 162
“Studies in germfree mice provide insights to understand the complex system and demonstrate the effects of the gut microbiota on host metabolism (Berg, 1996).”
BackgroundKandpal, M., Indari, O., Baral, B., Jakhmola, S., Tiwari, D., Bhandari, V., Pandey, R. K., Bala, K., Sonawane, A., & Jha, H. C. (2022) · Metabolites · doi:10.3390/metabo12111064 · Cited by 177
Complex links between dietary lipids, endogenous endotoxins and metabolic inflammation
Laugerette, F., Vors, C., Peretti, N., & Michalski, M. (2010) · Biochimie · doi:10.1016/j.biochi.2010.04.016 · Cited by 170
“11 12 However, in non-pathological conditions, the healthy human body also contains numerous 13 endogenous bacteria (~10 14 ) [6].”
BackgroundSaccharomyces boulardiistimulates sIgA production and the phagocytic system of gnotobiotic mice
Rodrigues, A. C. P., Cara, D. C., Fretez, S. H. G. G., Cunha, F. Q., Vieira, E., Nicoli, J. R., & Vieira, L. Q. (2000) · Journal of Applied Microbiology · doi:10.1046/j.1365-2672.2000.01128.x · Cited by 161
“The indigenous microbiota of the digestive tract has an important role in the protection of the host against infections at this site (Berg 1996).”
BackgroundKarve, S. S., Pradhan, S. K., Ward, D. V., & Weiss, A. A. (2017) · PLoS ONE · doi:10.1371/journal.pone.0178966 · Cited by 157
Role of Se-dependent glutathione peroxidases in gastrointestinal inflammation and cancer
Chu, F., Esworthy, R. S., & Doroshow, J. H. (2004) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2004.04.010 · Cited by 160
Reconstructing 16S rRNA genes in metagenomic data
Yuan, C., Lei, J., Cole, J. R., & Sun, Y. (2015) · Bioinformatics · doi:10.1093/bioinformatics/btv231 · Cited by 156
“It is estimated that there are 1014 bacterial cell inhabiting on our body, which is 10 times more than our own cells (Berg, 1996; Savage, 1977).”
BackgroundMolecular and Cellular Basis of Microflora-Host Interactions1,
Winkler, P., Ghadimi, D., Schrezenmeir, J., & Kraehenbühl, J.-P. (2007) · Journal of Nutrition · doi:10.1093/jn/137.3.756s · Cited by 158
Insight into the microbial multicellular lifestyle via flow‐cell technology and confocal microscopy
Pamp, S. J., Sternberg, C., & Tolker‐Nielsen, T. (2008) · Cytometry Part A · doi:10.1002/cyto.a.20685 · Cited by 164
“Appl Environ Microbiol 2007;73(15):4922–4930.”
BackgroundToward a general theory of evolution: Extending Darwinian theory to inanimate matter
Pross, A. (2011) · Journal of Systems Chemistry · doi:10.1186/1759-2208-2-1 · Cited by 164
“The revelation that the cellular mass that we characterize as an individual human being (you, me, or the girl next door) actually consists of significantly more bacterial cells than human cells (~10(14) compared to ~10(13)) [66], all working together in a symbiotic relationship to establish a dynamic kinetically stabl…”
BackgroundBenefits of bacteria-derived exopolysaccharides on gastrointestinal microbiota, immunity and health
Oerlemans, M. M. P., Akkerman, R., Ferrari, M. D. L., Walvoort, M. T. C., & de Vos, P. (2020) · Journal of Functional Foods · doi:10.1016/j.jff.2020.104289 · Cited by 159
Moal, V. L.-L., Amsellem, R., Servin, A. L., & Coconnier, M.-H. (2002) · Gut · doi:10.1136/gut.50.6.803 · Cited by 152
Host contributes to longitudinal diversity of fecal microbiota in swine selected for lean growth
Lu, D., Tiezzi, F., Schillebeeckx, C., McNulty, N. P., Schwab, C. R., Shull, C. M., & Maltecca, C. (2018) · Microbiome · doi:10.1186/s40168-017-0384-1 · Cited by 163
Mazuski, J. E., & Solomkin, J. S. (2009) · Surgical Clinics of North America · doi:10.1016/j.suc.2008.12.001 · Cited by 150
Biofilm-growing intestinal anaerobic bacteria
Donelli, G., Vuotto, C., Cardines, R., & Mastrantonio, P. (2012) · FEMS Immunology & Medical Microbiology · doi:10.1111/j.1574-695x.2012.00962.x · Cited by 148
“As the small intestine is concerned, bacterial concentration ranges from 10 to 10 bacteria per gram of intestinal content and anaerobes are mainly represented by Bacteroides, Bifidobacterium, Clostridium, Finegoldia (formerly Peptostreptococcus), Fusobacterium, Prevotella, and Veillonella species (Berg, 1996).”
Background
Metadata
- Authors
- Berg, R.
- Affiliations
- Louisiana State University (US)
- Corresponding author
- Berg, R
- Venue
- Trends in Microbiology
- Publisher
- Elsevier BV
- Published
- 1996-11
- Volume
- 4
- Issue
- 11
- Pages
- 430-435
- ISSN
- 0966-842X (ISSN-L)
- OpenAlex
- W2087484128
- Cited by
- 1,153
- References
- 17
- Citations by year
- 2026: 12 · 2025: 24 · 2024: 24 · 2023: 27 · 2022: 34 · 2021: 45 · 2020: 50 · 2019: 56 · 2018: 41 · 2017: 59 · 2016: 54 · 2015: 42 · 2014: 59 · 2013: 39 · 2012: 54
- FWCI
- 3.03
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Trends in Microbiology (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Life Sciences › Agricultural and Biological Sciences › Food Science › Probiotics and Fermented Foods
- Health Sciences › Nursing › Nutrition and Dietetics › Infant Nutrition and Health
- Keywords
- gastrointestinal tract, host-pathogen interaction, bacterial antagonism, colonization resistance, opportunistic pathogens, mucosal barrier, systemic infection, host-microbe interactions
- MeSH terms
- Animals, Digestive System, Ecology, Humans, Mouth, Bacterial Physiological Phenomena
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