Role of the microbiota in immunity and inflammation.

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  1. Commensal microbes and interferon-λ determine persistence of enteric murine norovirus infection
    Megan T. Baldridge, Timothy J. Nice, Broc T. McCune, Christine C. Yokoyama, Amal Kambal, Michael J. Wheadon, Michael Diamond, Yulia Ivanova, Maxim N. Artyomov, Herbert W. Virgin · 2014 · Science
  2. Regulation of short-chain fatty acids in the immune system
    Xiaofeng Liu, Jia-Hao Shao, Yi-Tao Liao, Lining Wang, Jia Yuan, Peng-jun Dong, Zhizhong Liu, Dandan He, Chao Li, Xian Zhang · 2023 · Frontiers in Immunology
  3. The immunology of long COVID
    Daniel Martin Altmann, Emily M. Whettlock, Siyi Liu, Deepa J. Arachchillage, Rosemary Jane Boyton · 2023 · Nature reviews. Immunology
  4. (Dis)Trust your gut: the gut microbiome in age-related inflammation, health, and disease
    Buford, Thomas W. · 2017 · Microbiome
  5. Probiotics and the Gut Immune System: Indirect Regulation
    Giorgio La Fata, Peter Weber, M. Hasan Mohajeri · 2017 · Probiotics and Antimicrobial Proteins
  6. Helminth infection promotes colonization resistance via type 2 immunity
    Deepshika Ramanan, Rowann Bowcutt, Soo Ching Lee, Mei San Tang, Zachary D. Kurtz, Yi Ding, Kenya Honda, William C. Gause, Martin J. Blaser, Richard Bonneau et al. · 2016 · Science
  7. Aged Gut Microbiota Contributes to Systemical Inflammaging after Transfer to Germ-Free Mice
    Fransen, Floris, van Beek, Adriaan A., Borghuis, Theo, Aidy, Sahar El, Hugenholtz, Floor, van der Gaast – de Jongh, Christa, Savelkoul, Huub F. J., De Jonge, Marien I., Boekschoten, Mark V., Smidt, Hauke et al. · 2017 · Frontiers in Immunology
  8. The dichotomous nature of T helper 17 cells
    Brigitta Stockinger, Sara Omenetti · 2017 · Nature reviews. Immunology
  9. Anti-inflammatory properties of edible mushrooms: A review
    Bożena Muszyńska, Agata Grzywacz, Katarzyna Kała, Joanna Gdula‐Argasińska · 2017 · Food Chemistry
  10. Pain regulation by gut microbiota: molecular mechanisms and therapeutic potential
    Ran Guo, Lihua Chen, Chungen Xing, Tong Liu · 2019 · British Journal of Anaesthesia
  11. Probiotics, prebiotics and synbiotics: Safe options for next-generation therapeutics
    Manoj Kumar Yadav, Indu Kumari, Bijender Singh, Krishna Kant Sharma, Santosh Kumar Tiwari · 2022 · Applied Microbiology and Biotechnology
  12. Intracellular Pathogens: Host Immunity and Microbial Persistence Strategies
    Aneesh Thakur, Heidi Mikkelsen, Gregers Jungersen · 2019 · Journal of Immunology Research
  13. Gut microbiome diversity is associated with sleep physiology in humans
    Smith, Robert P., Easson, Cole, Lyle, Sarah M., Kapoor, Ritishka, Donnelly, Chase P., Davidson, Eileen J., Parikh, Esha, Lopez, Jose V., Tartar, Jaime L. · 2019 · PLOS ONE
  14. Interaction of the microbiota with the human body in health and diseases
    Safaa Altveş, Hatice Kübra Yıldız, Hasibe Cıngıllı Vural · 2019 · Bioscience of Microbiota Food and Health
  15. Probiotics, prebiotics and amelioration of diseases
    Tsai, Yu-Ling, Lin, Tzu-Lung, Chang, Chih-Jung, Wu, Tsung-Ru, Lai, Wei-Fan, Lu, Chia-Chen, Lai, Hsin-Chih · 2019 · Journal of Biomedical Science
  16. The Influence of the Gut Microbiome on Host Metabolism Through the Regulation of Gut Hormone Release
    Alyce M. Martin, Emily W. L. Sun, Geraint B. Rogers, Damien J. Keating · 2019 · Frontiers in Physiology
  17. Type 2 immunity in allergic diseases
    İsmail Öğülür, Yasutaka Mitamura, Duygu Yazıcı, Yağız Pat, Sena Ardıçlı, Manru Li, Paolo D’Avino, Carina Beha, Huseyn Babayev, Bingjie Zhao et al. · 2025 · Cellular and Molecular Immunology
  18. RETRACTED ARTICLE: Role of the gut microbiome in chronic diseases: a narrative review
    Vijay, Amrita, Valdes, Ana M. · 2022 · European Journal of Clinical Nutrition · Retracted
  19. Cancer and the Microbiome—Influence of the Commensal Microbiota on Cancer, Immune Responses, and Immunotherapy
    Matson, Vyara, Chervin, Carolina Soto, Gajewski, Thomas F. · 2021 · Gastroenterology
  20. Microbial imbalance in inflammatory bowel disease patients at different taxonomic levels
    Alam, Mohammad Tauqeer, Amos, Gregory C. A., Murphy, Andrew R. J., Murch, Simon, Wellington, Elizabeth M. H., Arasaradnam, Ramesh P. · 2020 · Gut Pathogens
  21. Breast cancer in postmenopausal women is associated with an altered gut metagenome
    Zhu, Jia, Liao, Ming, Yao, Ziting, Liang, Wenying, Li, Qibin, Liu, Jianlun, Yang, Huawei, Ji, Yinan, Wei, Wei, Tan, Aihua et al. · 2018 · Microbiome
  22. Hallmarks of environmental insults
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  23. Functional characterization of IgA-targeted bacterial taxa from undernourished Malawian children that produce diet-dependent enteropathy
    Andrew L. Kau, Joseph D. Planer, Jie Liu, Sindhuja M. Rao, Tanya Yatsunenko, Indi Trehan, MARK J. MANARY, Ta‐Chiang Liu, Thaddeus S. Stappenbeck, Kenneth Mphatso Maleta et al. · 2015 · Science Translational Medicine
  24. Next generation probiotics in disease amelioration
    Chih‐Jung Chang, Tzu‐Lung Lin, Yu‐Ling Tsai, Tsung-Ru Wu, Wei-Fan Lai, Chia‐Chen Lu, Hsin‐Chih Lai · 2019 · Journal of Food and Drug Analysis
  25. Lung Microbiota Contribute to Pulmonary Inflammation and Disease Progression in Pulmonary Fibrosis
    David N. O’Dwyer, Shanna L. Ashley, Stephen J. Gurczynski, Meng Xia, Carol A. Wilke, Nicole R. Falkowski, Katy C. Norman, Kelly B. Arnold, Gary B. Huffnagle, Margaret L. Salisbury et al. · 2019 · American Journal of Respiratory and Critical Care Medicine
  26. Ontogeny of early life immunity
    David J. Dowling, Ofer Levy · 2014 · Trends in Immunology
  27. Bioengineered and biohybrid bacteria-based systems for drug delivery
    Zeinab Hosseinidoust, Babak Mostaghaci, Öncay Yaşa, Byung-Wook Park, Ajay Vikram Singh, Metin Sitti · 2016 · Advanced Drug Delivery Reviews
  28. Endurance exercise and gut microbiota: A review
    Mach, Núria, Fuster-Botella, Dolors · 2017 · Journal of Sport and Health Science
  29. Plant-Microbe Interactions Facing Environmental Challenge
    Yu Cheng, Li Zhang, Sheng Yang He · 2019 · Cell Host & Microbe
  30. Microbiota controls the homeostasis of glial cells in the gut lamina propria
    Kabouridis, Panagiotis S., Lasrado, Reena, McCallum, Sarah, Chng, Song Hui, Snippert, Hugo J., Clevers, Hans, Pettersson, Sven, Pachnis, Vassilis · 2015 · Neuron
  31. Gut Microbiota Elicits a Protective Immune Response against Malaria Transmission
    Bahtiyar Yılmaz, Sílvia Portugal, Tuan M. Tran, Raffaella Gozzelino, Susana Ramos, Joana Gomes, Ana Paula Regalado, Peter J. Cowan, Anthony J.F. d’Apice, Anita S. Chong et al. · 2014 · Cell
  32. Innate and adaptive lymphocytes sequentially shape the gut microbiota and lipid metabolism
    Kairui Mao, António P. Baptista, Samira Tamoutounour, Lenan Zhuang, Nicolas Jean Bouladoux, Andrew J. Martins, Yuefeng Huang, Michael Y. Gerner, Yasmine Belkaid, Ronald N. Germain · 2018 · Nature
  33. Neuronal programming by microbiota regulates intestinal physiology
    Yuuki Obata, Álvaro Castaño, Stefan Boeing, Ana Carina Bon‐Frauches, Candice Fung, Todd L. Fallesen, Mercedes Gomez de Agüero, Bahtiyar Yılmaz, Rita Lopes, Almaz Huseynova et al. · 2020 · Nature
  34. Moving towards personalized treatments of immune-related adverse events
    Esfahani, Khashayar, Elkrief, Arielle, Calabrese, Cassandra, Lapointe, Réjean, Hudson, Marie, Routy, Bertrand, Miller, Wilson H., Calabrese, Leonard · 2020 · Nature Reviews Clinical Oncology
  35. The gut microbiome’s role in the development, maintenance, and outcomes of sepsis
    Adelman, Max W., Woodworth, Michael H., Langelier, Charles, Busch, Lindsay M., Kempker, Jordan A., Kraft, Colleen S., Martin, Greg S. · 2020 · Critical Care
  36. Gut Microbiota-Dependent Marker TMAO in Promoting Cardiovascular Disease: Inflammation Mechanism, Clinical Prognostic, and Potential as a Therapeutic Target
    Shengjie Yang, Xinye Li, Fan Yang, Ran Zhao, Xiandu Pan, Jiaqi Liang, Li Tian, Xiaoya Li, Longtao Liu, Yanwei Xing et al. · 2019 · Frontiers in Pharmacology
  37. Bacteria in cancer initiation, promotion and progression
    Geniver El Tekle, Wendy S. Garrett · 2023 · Nature reviews. Cancer
  38. The Association between Early-Life Gut Microbiota and Long-Term Health and Diseases
    Anujit Sarkar, Ji Youn Yoo, Samia Valéria Ozorio Dutra, Katherine Hope Morgan, Maureen E. Groer · 2021 · Journal of Clinical Medicine
  39. Antibiotics impair murine hematopoiesis by depleting the intestinal microbiota
    Josefsdottir, Kamilla S., Baldridge, Megan T., Kadmon, Claudine S., King, Katherine Y. · 2017 · Blood
  40. MyD88 Signaling in T Cells Directs IgA-Mediated Control of the Microbiota to Promote Health
    Kubinak, Jason L., Petersen, Charisse, Stephens, W. Zac, Soto, Ray, Bake, Erin, O’Connell, Ryan M., Round, June L. · 2015 · Cell Host & Microbe
  41. IgA regulates the composition and metabolic function of gut microbiota by promoting symbiosis between bacteria
    Akira Nakajima, Alexis Vogelzang, Mikako Maruya, Michio Miyajima, Megumi Murata, Aoi Son, Tomomi Kuwahara, Tatsuaki Tsuruyama, Satoshi Yamada, Minoru Matsuura et al. · 2018 · The Journal of Experimental Medicine
  42. The influence of skin microorganisms on cutaneous immunity
    Yasmine Belkaid, Samira Tamoutounour · 2016 · Nature reviews. Immunology
  43. Intestinal Microbiota and Relapse After Hematopoietic-Cell Transplantation
    Peled, Jonathan U., Devlin, Sean M., Staffas, Anna, Lumish, Melissa, Khanin, Raya, Littmann, Eric R., Ling, Lilan, Kosuri, Satyajit, Maloy, Molly, Slingerland, John B. et al. · 2017 · Journal of Clinical Oncology
  44. Bioactive Molecules Released in Food by Lactic Acid Bacteria: Encrypted Peptides and Biogenic Amines
    Pessione, Enrica, Cirrincione, Simona · 2016 · Frontiers in Microbiology
  45. Interaction of dietary polyphenols and gut microbiota: Microbial metabolism of polyphenols, influence on the gut microbiota, and implications on host health
    Gizem Çatalkaya, Koen Venema, Luigi Lucini, Gabriele Rocchetti, Dominique Delmas, Maria Daglia, Anna De Filippis, Hang Xiao, José Luis Quiles, Jianbo Xiao et al. · 2020 · Food Frontiers
  46. Compartmentalized gut lymph node drainage dictates adaptive immune responses
    Daria Esterházy, Maria Cecília Campos Canesso, Luka Mesin, Paul A. Muller, Tiago B. R. Castro, Ainsley A. K. Lockhart, Mahmoud Eljalby, Ana Maria Caetano Faria, Daniel Mucida · 2019 · Nature
  47. Blood metabolome predicts gut microbiome α-diversity in humans
    Tomasz Maciej Wilmanski, Noa Rappaport, John C. Earls, Andrew T. Magis, Ohad Manor, Jennifer C. Lovejoy, Gilbert S. Omenn, Leroy Hood, Sean M. Gibbons, Nathan D. Price · 2019 · Nature Biotechnology
  48. Effect of gut microbiota on depressive-like behaviors in mice is mediated by the endocannabinoid system
    Grégoire Chevalier, Eleni Siopi, Laure Guenin‐Macé, Maud Pascal, Thomas Laval, Aline Rifflet, Ivo Gomperts Boneca, Caroline Demangel, Benoît Colsch, Alain Pruvost et al. · 2020 · Nature Communications
  49. Gut microbiome, big data and machine learning to promote precision medicine for cancer
    Cammarota, Giovanni, Ianiro, Gianluca, Ahern, Anna, Carbone, Carmine, Temko, Andriy, Claesson, Marcus J., Gasbarrini, Antonio, Tortora, Giampaolo · 2020 · Nature Reviews Gastroenterology & Hepatology
  50. The Microbiota–Gut–Brain Axis and Alzheimer’s Disease: Neuroinflammation Is to Blame?
    Megur, Ashwinipriyadarshini, Baltriukienė, Daiva, Bukelskienė, Virginija, Burokas, Aurelijus · 2020 · Nutrients
  51. Depression's Unholy Trinity: Dysregulated Stress, Immunity, and the Microbiome
    Cruz-Pereira, Joana S., Rea, Kieran, Nolan, Yvonne M., O'Leary, Olivia F., Dinan, Timothy G., Cryan, John F. · 2020 · Annual Review of Psychology
  52. Tryptophan Metabolism by Gut Microbiome and Gut-Brain-Axis: An in silico Analysis
    Harrisham Kaur, Chandrani Bose, Sharmila S. Mande · 2019 · Frontiers in Neuroscience
  53. Fasting-Mimicking Diet Modulates Microbiota and Promotes Intestinal Regeneration to Reduce Inflammatory Bowel Disease Pathology
    Rangan, Priya, Choi, Inyoung, Wei, Min, Navarrete, Gerardo, Guen, Esra, Brandhorst, Sebastian, Enyati, Nobel, Pasia, Gab, Maesincee, Daral, Ocon, Vanessa et al. · 2019 · Cell Reports
  54. Microbiome therapeutics — Advances and challenges
    Mark Mimee, Robert J. Citorik, Timothy K. Lu · 2016 · Advanced Drug Delivery Reviews
  55. Gut microbiota in neurodegenerative disorders
    Suparna Roy Sarkar, Sugato Banerjee · 2019 · Journal of Neuroimmunology
  56. Gut microbiota modulate dendritic cell antigen presentation and radiotherapy-induced antitumor immune response
    Uribe-Herranz, Mireia, Rafail, Stavros, Beghi, Silvia, Gil-de-Gómez, Luis, Verginadis, Ioannis, Bittinger, Kyle, Pustylnikov, Sergey, Pierini, Stefano, Perales-Linares, Renzo, Blair, Ian A. et al. · 2019 · Journal of Clinical Investigation
  57. Gut Microbiota, Immune System, and Bone
    D’Amelio, P., Sassi, F. · 2018 · Calcified Tissue International
  58. Maternal IgG and IgA Antibodies Dampen Mucosal T Helper Cell Responses in Early Life
    Koch, Meghan A., Reiner, Gabrielle L., Lugo, Kyler A., Kreuk, Lieselotte S.M., Stanbery, Alison G., Ansaldo, Eduard, Seher, Thaddeus D., Ludington, William B., Barton, Gregory M. · 2016 · Cell
  59. An in vitro batch fermentation protocol for studying the contribution of food to gut microbiota composition and functionality
    Sergio Pérez-Burillo, Silvia Molino, Beatriz Navajas-Porras, Álvaro Jesús Valverde-Moya, Daniel Hinojosa-Nogueira, Alicia López-Maldonado, Silvia Pastoriza, José Ángel Rufián‐Henares · 2021 · Nature Protocols
  60. Unexpected guests in the tumor microenvironment: microbiome in cancer
    Abigail Wong-Rolle, Haohan Karen Wei, Chen Ning Zhao, Chengcheng Jin · 2020 · Protein & Cell
  61. The microbiome in threatened species conservation
    Annie G. West, David W. Waite, Peter Deines, David G. Bourne, Andrew Digby, Valerie J. McKenzie, Michael W. Taylor · 2018 · Biological Conservation
  62. Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential
    Wampach, Linda, Heintz-Buschart, Anna, Fritz, Joëlle V., Ramiro-Garcia, Javier, Habier, Janine, Herold, Malte, Narayanasamy, Shaman, Kaysen, Anne, Hogan, Angela H., Bindl, Lutz et al. · 2018 · Nature Communications
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