Histones and histone modifications

Histone H3.1 and H3.3 Complexes Mediate Nucleosome Assembly Pathways Dependent or Independent of DNA Synthesis

Tagami, H., Ray-Gallet, D., Almouzni, G., & Nakatani, Y. (2004) · Cell · doi:10.1016/s0092-8674(03)01064-x · Cited by 1,297 · see citing works

Histone and chromatin cross-talk

Fischle, W., Wang, Y., & Allis, C. D. (2003) · Current Opinion in Cell Biology · doi:10.1016/s0955-0674(03)00013-9 · Cited by 1,207 · see citing works

Binary switches and modification cassettes in histone biology and beyond

Fischle, W., Wang, Y., & Allis, C. D. (2003) · Nature · doi:10.1038/nature02017 · Cited by 627 · see citing works

Conformational Dynamics of the Chromatin Fiber in Solution: Determinants, Mechanisms, and Functions

Hansen, J. C. (2002) · Annual Review of Biophysics and Biomolecular Structure · doi:10.1146/annurev.biophys.31.101101.140858 · Cited by 556 · see citing works

Heterochromatin: silence is golden

Elgin, S. C. R., & Grewal, S. I. S. (2003) · Current Biology · doi:10.1016/j.cub.2003.11.006 · Cited by 199 · see citing works

SWRred Not Shaken

Korber, P., & Hörz, W. (2004) · Cell · doi:10.1016/s0092-8674(04)00296-x · Cited by 59 · see citing works

Identification of 67 Histone Marks and Histone Lysine Crotonylation as a New Type of Histone Modification

Tan, M., Luo, H., Lee, S., Jin, F., Yang, J. S., Montellier, E., Buchou, T., Cheng, Z., Rousseaux, S., Rajagopal, N., et al. (2011) · Cell · doi:10.1016/j.cell.2011.08.008 · Cited by 1,902 · see citing works

The NAD+-dependent deacetylase SIRT1 modulates CLOCK-mediated chromatin remodeling and circadian control

Nakahata, Y., Kaluzova, M., Grimaldi, B., Sahar, S., Hirayama, J., Chen, D., Guarente, L. P., & Sassone-Corsi, P. (2008) · Cell · doi:10.1016/j.cell.2008.07.002 · Cited by 1,427 · see citing works

Lysine propionylation and butyrylation are novel post-translational modifications in histones

Chen, Y., Sprung, R., Tang, Y., Ball, H., Sangras, B., Kim, S. C., Falck, J. R., Peng, J., Gu, W., & Zhao, Y. (2007) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m700021-mcp200 · Cited by 764 · see citing works

A role for the Tip60 histone acetyltransferase in the acetylation and activation of ATM

Sun, Y., Jiang, X., Chen, S., Fernandes, N., & Price, B. D. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0504211102 · Cited by 738 · see citing works

Histone deacetylase 3 (HDAC3) and other class I HDACs regulate colon cell maturation and p21 expression and are deregulated in human colon cancer

Wilson, A. J., Byun, D.-S., Popova, N., Murray, L. B., L'Italien, K., Sowa, Y., Arango, D., Velcich, A., Augenlicht, L. H., & Mariadason, J. M. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m510023200 · Cited by 575 · see citing works

Chemical mechanisms of histone lysine and arginine modifications

Smith, B. C., & Denu, J. M. (2009) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2008.06.005 · Cited by 390 · see citing works

Epigenetics of endometriosis

Guo, S.-W. (2009) · Molecular Human Reproduction · doi:10.1093/molehr/gap064 · Cited by 328 · see citing works

On the length, weight and GC content of the human genome

Piovesan, A., Pelleri, M. C., Antonaros, F., Strippoli, P., Caracausi, M., & Vitale, L. (2019) · BMC Research Notes · doi:10.1186/s13104-019-4137-z · Cited by 283 · see citing works

Early-life experience, epigenetics, and the developing brain

Kundakovic, M., & Champagne, F. A. (2015) · Neuropsychopharmacology · doi:10.1038/npp.2014.140 · Cited by 304 · see citing works

HDAC inhibitor sodium butyrate-mediated epigenetic regulation enhances neuroprotective function of microglia during ischemic stroke

Patnala, R., Arumugam, T. V., Gupta, N., & Dheen, S. T. (2017) · Molecular Neurobiology · doi:10.1007/s12035-016-0149-z · Cited by 278 · see citing works

Epigenetic influence of social experiences across the lifespan

Champagne, F. A. (2010) · Developmental Psychobiology · doi:10.1002/dev.20436 · Cited by 273 · see citing works

The omniscient placenta: Metabolic and epigenetic regulation of fetal programming

Nugent, B. M., & Bale, T. L. (2015) · Frontiers in Neuroendocrinology · doi:10.1016/j.yfrne.2015.09.001 · Cited by 222 · see citing works

Loss of linker histone H1 in cellular senescence

Funayama, R., Saito, M., Tanobe, H., & Ishikawa, F. (2006) · The Journal of Cell Biology · doi:10.1083/jcb.200604005 · Cited by 241 · see citing works

Epigenetic regulation in major depression and other stress-related disorders: molecular mechanisms, clinical relevance and therapeutic potential

Yuan, M., Yang, B., Rothschild, G., Mann, J. J., Sanford, L. D., Tang, X., Huang, C., Wang, C., & Zhang, W. (2023) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-023-01519-z · Cited by 246 · see citing works

The c‐myc Promoter: Still MysterY and Challenge

(2008) · Advances in Cancer Research · doi:10.1016/s0065-230x(07)99004-1 · Cited by 211 · see citing works

Pharmacogenetic analysis of lithium-induced delayed aging in Caenorhabditis elegans

McColl, G., Killilea, D. W., Hubbard, A. E., Vantipalli, M. C., Melov, S., & Lithgow, G. J. (2008) · Journal of Biological Chemistry · doi:10.1074/jbc.m705028200 · Cited by 202 · see citing works

Developmental Downregulation of Histone Posttranslational Modifications Regulates Visual Cortical Plasticity

Putignano, E., Lonetti, G., Cancedda, L., Ratto, G., Costa, M., Maffei, L., & Pizzorusso, T. (2007) · Neuron · doi:10.1016/j.neuron.2007.02.007 · Cited by 196 · see citing works

Metformin regulates mitochondrial biogenesis and senescence through AMPK mediated H3K79 methylation: relevance in age-associated vascular dysfunction

Karnewar, S., Neeli, P. K., Panuganti, D., Kotagiri, S., Mallappa, S., Jain, N., Jerald, M. K., & Kotamraju, S. (2018) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/j.bbadis.2018.01.018 · Cited by 161 · see citing works

Transcriptional Activators Are Dispensable for Transcription in the Absence of Spt6-Mediated Chromatin Reassembly of Promoter Regions

Adkins, M. W., & Tyler, J. K. (2006) · Molecular Cell · doi:10.1016/j.molcel.2005.12.010 · Cited by 162 · see citing works

PU.1 inhibits the erythroid program by binding to GATA‐1 on DNA and creating a repressive chromatin structure

Stopka, T., Amanatullah, D. F., Papetti, M., & Skoultchi, A. I. (2005) · The EMBO Journal · doi:10.1038/sj.emboj.7600834 · Cited by 154 · see citing works

DNA methylation impacts on learning and memory in aging

Liu, L., van Groen, T., Kadish, I., & Tollefsbol, T. O. (2009) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2007.07.020 · Cited by 152 · see citing works

Hypoxia induces trimethylated H3 lysine 4 by inhibition of JARID1A demethylase

Zhou, X., Sun, H., Chen, H., Zavadil, J., Kluz, T., Arita, A., & Costa, M. (2010) · Cancer Research · doi:10.1158/0008-5472.can-09-2942 · Cited by 134 · see citing works

Regulation of the androgen receptor by SET9-mediated methylation.

Gaughan, L., Stockley, J., Wang, N., McCracken, S. R. C., Treumann, A., Armstrong, K., Shaheen, F., Watt, K., McEwan, I. J., Wang, C., et al. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkq861 · Cited by 127 · see citing works

Histone modifications, DNA methylation, and Schizophrenia

Gavin, D. P., & Sharma, R. P. (2010) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2009.10.010 · Cited by 121 · see citing works

Histone dynamics in living cells revealed by photobleaching

Kimura, H. (2005) · DNA Repair · doi:10.1016/j.dnarep.2005.04.012 · Cited by 109 · see citing works

Beneficial effects of butyrate on brain functions: A view of epigenetic

Alpino, G. D. C. Á., Pereira-Sol, G. A., Dias, M. D. M. E., Aguiar, A. S. D., & Peluzio, M. D. C. G. (2024) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2022.2137776 · Cited by 110 · see citing works

Adrenocorticotropic Hormone-Mediated Signaling Cascades Coordinate a Cyclic Pattern of Steroidogenic Factor 1-Dependent Transcriptional Activation

Winnay, J. N., & Hammer, G. D. (2006) · Molecular Endocrinology · doi:10.1210/me.2005-0215 · Cited by 74 · see citing works

Maternal imprints and the origins of variation

Champagne, F. A. (2011) · Hormones and Behavior · doi:10.1016/j.yhbeh.2011.02.016 · Cited by 74 · see citing works

Coordinate changes in histone modifications, mRNA levels, and metabolite profiles in clonal INS-1 832/13 β-cells accompany functional adaptations to lipotoxicity

Malmgren, S., Spégel, P., Danielsson, A. P. H., Nagorny, C. L., Andersson, L. E., Nitert, M. D., Ridderstråle, M., Mulder, H., & Ling, C. (2013) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.422527 · Cited by 71 · see citing works

Sex differences in brain expression of X- and Y-linked genes

Xu, J., & Disteche, C. M. (2006) · Brain Research · doi:10.1016/j.brainres.2006.08.049 · Cited by 63 · see citing works

Histone acetylation and expression of mono-aminergic transmitters synthetases involved in CUS-induced depressive rats

Liu, D., Qiu, H.-M., Fei, H.-Z., Hu, X.-Y., Xia, H.-J., Wang, L.-J., Qin, L.-J., Jiang, X.-H., & Zhou, Q.-X. (2014) · Experimental Biology and Medicine · doi:10.1177/1535370213513987 · Cited by 49 · see citing works

Telomeres and epigenetics: potential relevance to chronic pain

Sibille, K. T., Witek-Janusek, L., Mathews, H. L., & Fillingim, R. B. (2012) · Pain · doi:10.1016/j.pain.2012.06.003 · Cited by 45 · see citing works

Oncogene‐induced cellular senescence elicits an anti‐ <scp>W</scp> arburg effect

Li, M., Durbin, K. R., Sweet, S. M. M., Tipton, J. D., Zheng, Y., & Kelleher, N. L. (2013) · PROTEOMICS · doi:10.1002/pmic.201200298 · Cited by 43 · see citing works

<i>Candida albicans SET1</i> encodes a histone 3 lysine 4 methyltransferase that contributes to the pathogenesis of invasive candidiasis

Raman, S. B., Nguyen, M. H., Zhang, Z., Cheng, S., Jia, H. Y., Weisner, N., Iczkowski, K., & Clancy, C. J. (2006) · Molecular Microbiology · doi:10.1111/j.1365-2958.2006.05121.x · Cited by 43 · see citing works

H3K9 acetylation of Tph2 involved in depression-like behavior in Male, but not female, juvenile offspring rat induced by prenatal stress

Dang, S., Lu, Y., Su, Q., Lin, T., Zhang, X., Zhang, H., Zhang, J., Zhang, L., Zhu, Z., & Li, H. (2018) · Neuroscience · doi:10.1016/j.neuroscience.2018.03.043 · Cited by 30 · see citing works

The multifunctional protein PACS-1 is required for HDAC2- and HDAC3-dependent chromatin maturation and genomic stability

Mani, C., Tripathi, K., Luan, S., Clark, D. W., Andrews, J. F., Vindigni, A., Thomas, G., & Palle, K. (2020) · Oncogene · doi:10.1038/s41388-020-1167-x · Cited by 27 · see citing works

Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA

Brower‐Toland, B. D., Smith, C. L., Yeh, R. C.-I., Lis, J. T., Peterson, C. L., & Wang, M. D. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.022638399 · Cited by 484 · see citing works

Mapping Nucleosome Locations on the 208-12 by AFM Provides Clear Evidence for Cooperativity in Array Occupation

Yodh, J. G., Woodbury, N. W., Shlyakhtenko, L. S., Lyubchenko, Y. L., & Lohr, D. (2002) · Biochemistry · doi:10.1021/bi011612e · Cited by 50 · see citing works

A correlation between nucleosome spacer region susceptibility to DNase 1 and histone acetylation

Nelson, D., Perry, M. E., & Chalkley, R. G. (1979) · Nucleic Acids Research · doi:10.1093/nar/6.2.561 · Cited by 28 · see citing works

A Statistical Thermodynamic Model Applied to Experimental AFM Population and Location Data Is Able to Quantify DNA-Histone Binding Strength and Internucleosomal Interaction Differences between Acetylated and Unacetylated Nucleosomal Arrays

Solis, F. J., Bash, R. C., Yodh, J. G., et al. (2004) · Biophysical Journal · doi:10.1529/biophysj.103.034744 · Cited by 30 · see citing works

Versatile roles for histones in early development

Shindo, Y., Brown, M. G., & Amodeo, A. A. (2022) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2022.02.003 · Cited by 11 · see citing works