The parcellation-based connectome: limitations and extensions
Abstract
The human connectome is an intricate system of interconnected elements, providing the basis for integrative brain function. An essential step in the macroscopic mapping and examination of this network of structural and functional interactions is the subdivision of the brain into large-scale regions. Parcellation approaches used for the formation of macroscopic brain networks include application of predefined anatomical templates, randomly generated templates and voxel-based divisions. In this review, we discuss the use of such parcellation approaches for the examination of connectome characteristics. We specifically address the impact of the choice of parcellation scheme and resolution on the estimation of the brain's topological and spatial network features. Although organizational principles of functional and structural brain networks appear to be largely independent of the adopted parcellation approach, quantitative measures of these principles may be significantly modulated. Future parcellation-based connectome studies might benefit from the adoption of novel network tools and promising advances in connectivity-based parcellation approaches.
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Currently, there is no consensus about which brain parcellation technique could be most useful.
“Currently, there is no consensus about which brain parcellation technique could be most useful (de Reus and Van den Heuvel, 2013; Yeh et al., 2020; Zalesky et al., 2012).”
From Quantitative mapping of the brain’s structural connectivity using diffusion MRI tractography: A review (2022) · cites this paper as de Reus and Van den Heuvel, 2013
Selection of a gray matter parcellation scheme is the first essential consideration when constructing a structural connectivity matrix and has been shown to be highly consequential in connectome analysis.
“Selection of a gray matter parcellation scheme (as described in Section 4.2) is the first essential consideration when constructing a structural connectivity matrix, and it has been shown to be highly consequential in connectome analysis (de Reus and Van den Heuvel, 2013; Yeh et al., 2020; Zalesky et al., 2012).”
From Quantitative mapping of the brain’s structural connectivity using diffusion MRI tractography: A review (2022) · cites this paper as de Reus and Van den Heuvel, 2013
Global topological metrics for structural and functional networks show stability across different parcellation schema of similar density, but vary considerably as a function of network size.
“Global topological metrics for structural and functional networks show stability across different parcellation schema of similar density, but vary considerably as a function of network size (de Reus and van den Heuvel, 2013; Fornito et al., 2010; Zalesky et al., 2010).”
From Development of large-scale functional networks from birth to adulthood: A guide to the neuroimaging literature (2017) · cites this paper as de Reus and van den Heuvel, 2013
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Graph Theoretical Model of a Sensorimotor Connectome in Zebrafish
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Flagged first, then by citations
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Sorted by citations
Network hubs in the human brain
van den Heuvel, M. P., & Sporns, O. (2013) · Trends in Cognitive Sciences · doi:10.1016/j.tics.2013.09.012 · Cited by 2,123 · see citing works
Resting-state fMRI in the human connectome project
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Functional connectomics from resting-state fMRI
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Topological organization of the human brain functional connectome across the lifespan
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Cognitive Network Neuroscience
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The Neonatal Connectome During Preterm Brain Development
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“2) is the first essential consideration when constructing a structural connectivity matrix, and it has been shown to be highly consequential in connectome analysis [355, 513, 527].”
BackgroundArdesch, D. J., Scholtens, L. H., Li, L., Preuss, T. M., Rilling, J. K., & van den Heuvel, M. P. (2019) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1818512116 · Cited by 152 · see citing works
Self-citationDisrupted brain connectome in semantic variant of primary progressive aphasia
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Rich-club in the brain’s macrostructure: Insights from graph theoretical analysis
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Liu, X., Lauer, K. K., Ward, B. D., Roberts, C. J., Liu, S., Gollapudy, S., Rohloff, R., Gross, W., Xu, Z., Chen, G., et al. (2017) · Brain Connectivity · doi:10.1089/brain.2016.0477 · Cited by 23 · see citing works
- Authors
- de Reus, M. A., & van den Heuvel, M. P.
- Venue
- NeuroImage
- Publisher
- Elsevier BV
- Published
- 2013-10
- Volume
- 80
- Pages
- 397-404
- ISSN
- 1053-8119 (ISSN-L)
- OpenAlex
- W1998095942
- Cited by
- 282
- References
- 113
- Citations by year
- 2026: 7 · 2025: 12 · 2024: 5 · 2023: 20 · 2022: 26 · 2021: 25 · 2020: 17 · 2019: 23 · 2018: 22 · 2017: 33 · 2016: 32 · 2015: 29 · 2014: 23 · 2013: 8
- FWCI
- 16.75
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- NeuroImage (publishedVersion)
- PubMed (publishedVersion)
- Amsterdam UMC (VU Amsterdam) - Institutional Repository (publishedVersion)
- Pure Amsterdam UMC (submittedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion)
- Topics
- Life Sciences › Neuroscience › Cognitive Neuroscience › Functional Brain Connectivity Studies
- Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Advanced Neuroimaging Techniques and Applications
- Physical Sciences › Physics and Astronomy › Statistical and Nonlinear Physics › Complex Network Analysis Techniques
- Keywords
- human connectome, brain parcellation, structural connectivity, functional connectivity, anatomical template, network topology, connectivity-based parcellation
- MeSH terms
- Animals, Brain, Humans, Magnetic Resonance Imaging, Models, Anatomic, Models, Neurological, Nerve Net, Connectome
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
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