Transcriptional Architecture of the Primate Neocortex

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

Edgar, R. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.1.207 · Cited by 13,288 · see citing works

Complex brain networks: graph theoretical analysis of structural and functional systems

Bullmore, E., & Sporns, O. (2009) · Nature Reviews Neuroscience · doi:10.1038/nrn2575 · Cited by 11,820 · see citing works

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

Irizarry, R. A. (2003) · Biostatistics · doi:10.1093/biostatistics/4.2.249 · Cited by 10,603 · see citing works

A General Framework for Weighted Gene Co-Expression Network Analysis

Zhang, B., & Horvath, S. (2005) · Statistical Applications in Genetics and Molecular Biology · doi:10.2202/1544-6115.1128 · Cited by 5,684 · see citing works

Genome-wide atlas of gene expression in the adult mouse brain

Lein, E. S., Hawrylycz, M. J., Ao, N., Ayres, M., Bensinger, A., Bernard, A., Boe, A. F., Boguski, M. S., Brockway, K. S., Byrnes, E. J., et al. (2007) · Nature · doi:10.1038/nature05453 · Cited by 5,572 · see citing works

Evolution at Two Levels in Humans and Chimpanzees: Their macromolecules are so alike that regulatory mutations may account for their biological differences

King, M.-C., & Wilson, A. C. (1975) · Science · doi:10.1126/science.1090005 · Cited by 2,815 · see citing works

Small-World Brain Networks

Bassett, D. S., & Bullmore, E. (2006) · The Neuroscientist · doi:10.1177/1073858406293182 · Cited by 2,600 · see citing works

Untitled work

(1909) · Cited by 2,575 · see citing works

Spatio-temporal transcriptome of the human brain

Kang, H. J., Kawasawa, Y. I., Cheng, F., Zhu, Y., Xu, X., Li, M., Sousa, A. M. M., Pletikos, M., Meyer, K. A., Sedmak, G., et al. (2011) · Nature · doi:10.1038/nature10523 · Cited by 2,084 · see citing works

Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R

Langfelder, P., Zhang, B., & Horvath, S. (2008) · Bioinformatics · doi:10.1093/bioinformatics/btm563 · Cited by 1,892 · see citing works

Neuronal subtype specification in the cerebral cortex

Molyneaux, B. J., Arlotta, P., Menezes, J. R. L., & Macklis, J. D. (2007) · Nature reviews. Neuroscience · doi:10.1038/nrn2151 · Cited by 1,632 · see citing works

Evolutionary and biomedical insights from the rhesus macaque genome.

Gibbs, R. A., Rogers, J., Katze, M. G., Bumgarner, R., Weinstock, G. M., Mardis, E. R., Remington, K. A., Strausberg, R. L., Venter, J. C., Wilson, R. K., et al. (2007) · Science · doi:10.1126/science.1139247 · Cited by 1,403 · see citing works

The Small World of the Cerebral Cortex

Sporns, O., & Zwi, J. D. (2004) · Neuroinformatics · doi:10.1385/ni:2:2:145 · Cited by 1,356 · see citing works

Neurons in Rhesus Monkey Visual Cortex: Systematic Relation between Time of Origin and Eventual Disposition

Rakic, P. (1974) · Science · doi:10.1126/science.183.4123.425 · Cited by 1,161 · see citing works

Neuronal Subtype-Specific Genes that Control Corticospinal Motor Neuron Development In Vivo

Arlotta, P., Molyneaux, B. J., Chen, J., Inoue, J., Kominami, R., & Macklis, J. D. (2005) · Neuron · doi:10.1016/j.neuron.2004.12.036 · Cited by 1,157 · see citing works

The Rhesus Monkey Brain in Stereotaxic Coordinates

Paxinos, G., Huang, X., & Toga, A. W. (1999) · Research Online (University of Wollongong) · Cited by 1,070 · see citing works

Development of the human cerebral cortex: Boulder Committee revisited

Bystron, I., Blakemore, C., & Rakic, P. (2008) · Nature Reviews Neuroscience · doi:10.1038/nrn2252 · Cited by 977 · see citing works

Application of a translational profiling approach for the comparative analysis of CNS cell types

Doyle, J. P., Dougherty, J. D., Heiman, M., Schmidt, E. F., Stevens, T. R., Ma, G., Bupp, S., Shrestha, P., Shah, R. D., Doughty, M. L., et al. (2008) · Cell · doi:10.1016/j.cell.2008.10.029 · Cited by 912 · see citing works

Functional organization of the transcriptome in human brain

Oldham, M. C., Konopka, G., Iwamoto, K., Langfelder, P., Kato, T., Horvath, S., & Geschwind, D. H. (2008) · Nature Neuroscience · doi:10.1038/nn.2207 · Cited by 752 · cited 9× · see citing works

Temporal dynamics and genetic control of transcription in the human prefrontal cortex

Colantuoni, C., Lipska, B. K., Ye, T., Hyde, T. M., Tao, R., Leek, J. T., Colantuoni, E. A., Elkahloun, A. G., Herman, M. M., Weinberger, D. R., et al. (2011) · Nature · doi:10.1038/nature10524 · Cited by 685 · see citing works

Functional and Evolutionary Insights into Human Brain Development through Global Transcriptome Analysis

Johnson, M. B., Kawasawa, Y. I., Mason, C. E., Krsnik, Ž., Coppola, G., Bogdanović, D., Geschwind, D. H., Mane, S. M., State, M. W., & Šestan, N. (2009) · Neuron · doi:10.1016/j.neuron.2009.03.027 · Cited by 603 · see citing works

Centenary of Brodmann's map — conception and fate

Zilles, K., & Amunts, K. (2010) · Nature reviews. Neuroscience · doi:10.1038/nrn2776 · Cited by 584 · see citing works

Molecular taxonomy of major neuronal classes in the adult mouse forebrain

Sugino, K., Hempel, C. M., Miller, M. N., Hattox, A. M., Shapiro, P., Wu, C., Huang, Z. J., & Nelson, S. B. (2006) · Nature Neuroscience · doi:10.1038/nn1618 · Cited by 521 · see citing works

A genetic variant that disrupts <i>MET</i> transcription is associated with autism

Campbell, D. B., Sutcliffe, J. S., Ebert, P. J., Militerni, R., Bravaccio, C., Trillo, S., Elia, M., Schneider, C., Melmed, R., Sacco, R., et al. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0605296103 · Cited by 401 · see citing works

Regional Patterns of Gene Expression in Human and Chimpanzee BrainsPreprint

Khaitovich, P., Muetzel, B., She, X., Lachmann, M., Hellmann, I., Dietzsch, J., Steigele, S., Do, H.-H., Weiß, G., Enard, W., et al. (2004) · Genome Research · doi:10.1101/gr.2538704 · Cited by 311 · see citing works

A Transcriptomic Atlas of Mouse Neocortical Layers

Belgard, T. G., Marques, A. C., Oliver, P. L., Abaan, H. Ö., Sirey, T., Hoerder‐Suabedissen, A., García‐Moreno, F., Molnár, Z., Margulies, E. H., & Ponting, C. P. (2011) · Neuron · doi:10.1016/j.neuron.2011.06.039 · Cited by 273 · see citing works

Defining a Molecular Atlas of the Hippocampus Using DNA Microarrays and High-Throughput In Situ Hybridization

Lein, E. S., Zhao, X., & Gage, F. H. (2004) · Journal of Neuroscience · doi:10.1523/jneurosci.4710-03.2004 · Cited by 270 · see citing works

Distinct Actions ofEmx1,Emx2, andPax6in Regulating the Specification of Areas in the Developing Neocortex

Bishop, K. M., Rubenstein, J. L. R., & O’Leary, D. D. M. (2002) · Journal of Neuroscience · doi:10.1523/jneurosci.22-17-07627.2002 · Cited by 260 · see citing works

Genetic regulation of arealization of the neocortex

O’Leary, D. D. M., & Sahara, S. (2008) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2008.05.011 · Cited by 219 · see citing works

Genome-wide analyses of human perisylvian cerebral cortical patterning

Abrahams, B. S., Tentler, D., Perederiy, J. V., Oldham, M. C., Coppola, G., & Geschwind, D. H. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0706128104 · Cited by 198 · see citing works

Ancient and Recent Positive Selection Transformed Opioid cis-Regulation in Humans

Rockman, M. V., Hahn, M. W., Soranzo, N., Zimprich, F., Goldstein, D. B., & Wray, G. A. (2005) · PLoS Biology · doi:10.1371/journal.pbio.0030387 · Cited by 197 · see citing works

Adult mouse brain gene expression patterns bear an embryologic imprint

Zapala, M. A., Hovatta, I., Ellison, J. A., Wodicka, L. M., Rio, J. A. D., Tennant, R. S., Tynan, W., Broide, R. S., Helton, R., Stoveken, B. S., et al. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0503357102 · Cited by 177 · see citing works

Transmitter receptors and functional anatomy of the cerebral cortex

Zilles, K., Palomero‐Gallagher, N., & Schleicher, A. (2004) · Journal of Anatomy · doi:10.1111/j.0021-8782.2004.00357.x · Cited by 159 · see citing works

Requirement of Heavy Neurofilament Subunit in the Development of Axons with Large Calibers

Elder, G. A., Friedrich, V. L., Kang, C., Bosco, P., Gourov, A., Tu, P., Zhang, B., Lee, V. M. ‐., & Lazzarini, R. A. (1998) · The Journal of Cell Biology · doi:10.1083/jcb.143.1.195 · Cited by 146 · see citing works

Novel Markers Reveal Subpopulations of Subplate Neurons in the Murine Cerebral Cortex

Hoerder‐Suabedissen, A., Wang, W., Lee, S., Davies, K. E., Goffinet, A. M., Rakić, S., Parnavelas, J. G., Reim, K., Nicolić, M., Paulsen, O., et al. (2008) · Cerebral Cortex · doi:10.1093/cercor/bhn195 · Cited by 143 · see citing works

In Search of a Unifying Theory of Complex Brain Evolution

Krubitzer, L. A. (2009) · Annals of the New York Academy of Sciences · doi:10.1111/j.1749-6632.2009.04421.x · Cited by 140 · see citing works

CLMP, a Novel Member of the CTX Family and a New Component of Epithelial Tight Junctions

Raschperger, E., Engström, U., Pettersson, R. F., & Fuxe, J. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m308249200 · Cited by 135 · see citing works

Regulation of MET by FOXP2, Genes Implicated in Higher Cognitive Dysfunction and Autism Risk

Mukamel, Z., Konopka, G., Wexler, E., Osborn, G. E., Dong, H., Bergman, M. Y., Levitt, P. R., & Geschwind, D. H. (2011) · Journal of Neuroscience · doi:10.1523/jneurosci.0181-11.2011 · Cited by 116 · see citing works

The organization of the transcriptional network in specific neuronal classes

Winden, K. D., Oldham, M. C., Mirnics, K., Ebert, P. J., Swan, C. H., Levitt, P., Rubenstein, J. L., Horvath, S., & Geschwind, D. H. (2009) · Molecular Systems Biology · doi:10.1038/msb.2009.46 · Cited by 112 · see citing works

Human-specific Organization of Primary Visual Cortex: Alternating Compartments of Dense Cat-301 and Calbindin Immunoreactivity in Layer 4A

Preuss, T. M. (2002) · Cerebral Cortex · doi:10.1093/cercor/12.7.671 · Cited by 108 · see citing works

Enriched Expression of Serotonin 1B and 2A Receptor Genes in Macaque Visual Cortex and their Bidirectional Modulatory Effects on Neuronal Responses

Watakabe, A., Komatsu, Y., Sadakane, O., Shimegi, S., Takahata, T., Higo, N., Tochitani, S., Hashikawa, T., Naito, T., Osaki, H., et al. (2009) · Cerebral Cortex · doi:10.1093/cercor/bhn219 · Cited by 93 · see citing works

Identification of brain transcriptional variation reproduced in peripheral blood: an approach for mapping brain expression traits

Jasinska, A. J., Service, S. K., Choi, O., DeYoung, J. A., Grujic, O., Kong, S.-Y., Jorgensen, M. J., Bailey, J. N., Breidenthal, S. E., Fairbanks, L. A., et al. (2009) · Human Molecular Genetics · doi:10.1093/hmg/ddp397 · Cited by 87 · see citing works

The Wiring Economy Principle: Connectivity Determines Anatomy in the Human Brain

Raj, A., & Chen, Y.-H. (2011) · PLoS ONE · doi:10.1371/journal.pone.0014832 · Cited by 74 · see citing works

Serotonin receptor 2C and mental disorders: Genetic, expression, and RNA editing studies

Iwamoto, K., Bundo, M., & Kato, T. (2009) · RNA Biology · doi:10.4161/rna.6.3.8370 · Cited by 67 · see citing works

High quality RNA from multiple brain regions simultaneously acquired by laser capture microdissection

Wang, W.-Z., Oeschger, F. M., Lee, S., & Molnár, Z. (2009) · BMC Molecular Biology · doi:10.1186/1471-2199-10-69 · Cited by 56 · see citing works

Neocortical areas, layers, connections, and gene expression

Yamamori, T., & Rockland, K. S. (2006) · Neuroscience Research · doi:10.1016/j.neures.2006.02.006 · Cited by 47 · see citing works

Hybridization histochemical and immunohistochemical localization of inhibin/activin subunits and messenger ribonucleic acids in the rat brain

Roberts, V. J., Barth, S., Meunier, H., & Vale, W. (1996) · The Journal of Comparative Neurology · doi:10.1002/(sici)1096-9861(19960115)364:3 · Cited by 45 · see citing works

Vav3-deficient Mice Exhibit a Transient Delay in Cerebellar Development

Quevedo, C., Sauzeau, V., Menacho-Márquez, M., Castro-Castro, A., & Bustelo, X. R. (2010) · Molecular Biology of the Cell · doi:10.1091/mbc.e09-04-0292 · Cited by 44 · see citing works

Differential Expression Patterns of occ1-Related Genes in Adult Monkey Visual Cortex

Takahata, T., Komatsu, Y., Watakabe, A., Hashikawa, T., Tochitani, S., & Yamamori, T. (2008) · Cerebral Cortex · doi:10.1093/cercor/bhn220 · Cited by 21 · see citing works

Refined anatomical isolation of functional sleep circuits exhibits distinctive regional and circadian gene transcriptional profiles

Winrow, C. J., Tanis, K. Q., Rigby, A. M., Taylor, R. R., Serikawa, K. A., McWhorter, M., Tokiwa, G. Y., Marton, M. J., Stone, D. J., Koblan, K. S., et al. (2009) · Brain Research · doi:10.1016/j.brainres.2009.02.083 · Cited by 18 · see citing works

An anatomically comprehensive atlas of the adult human brain transcriptome

Hawrylycz, M. J., Lein, E. S., Guillozet-Bongaarts, A. L., Shen, E. H., Ng, L., Miller, J. A., van de Lagemaat, L. N., Smith, K. A., Ebbert, A., Riley, Z. L., et al. (2012) · Nature · doi:10.1038/nature11405 · Cited by 3,083 · see citing works

Transcriptional landscape of the prenatal human brain

Miller, J. A., Ding, S.-L., Sunkin, S. M., Smith, K. A., Ng, L., Szafer, A., Ebbert, A., Riley, Z. L., Royall, J. J., Aiona, K., et al. (2014) · Nature · doi:10.1038/nature13185 · Cited by 1,325 · see citing works

Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism

Parikshak, N. N., Luo, R., Zhang, A., Won, H., Lowe, J. K., Chandran, V., Horvath, S., & Geschwind, D. H. (2013) · Cell · doi:10.1016/j.cell.2013.10.031 · Cited by 1,039 · see citing works

Comparative cellular analysis of motor cortex in human, marmoset and mouse

Bakken, T. E., Jorstad, N. L., Hu, Q., Lake, B. B., Tian, W., Kalmbach, B. E., Crow, M., Hodge, R. D., Krienen, F. M., Sorensen, S. A., et al. (2021) · Nature · doi:10.1038/s41586-021-03465-8 · Cited by 812 · see citing works

Anatomy of hierarchy: Feedforward and feedback pathways in macaque visual cortex

Markov, N. T., Vezoli, J., Chameau, P., Falchier, A., Quilodran, R., Huissoud, C., Lamy, C., Misery, P., Giroud, P., Ullman, S., et al. (2014) · Journal of Comparative Neurology · doi:10.1002/cne.23458 · Cited by 759 · see citing works

Canonical genetic signatures of the adult human brain

Hawrylycz, M., Miller, J. A., Menon, V., Feng, D., Dolbeare, T., Guillozet-Bongaarts, A. L., Jegga, A. G., Aronow, B. J., Lee, C.-K., Bernard, A., et al. (2015) · Nature Neuroscience · doi:10.1038/nn.4171 · Cited by 663 · see citing works

Cortical high-density counterstream architectures

Markov, N. T., Ercsey-Ravasz, M., Van Essen, D. C., Knoblauch, K., Toroczkai, Z., & Kennedy, H. (2013) · Science · doi:10.1126/science.1238406 · Cited by 616 · see citing works

Morphometric Similarity Networks Detect Microscale Cortical Organization and Predict Inter-Individual Cognitive Variation

Seidlitz, J., Váša, F., Shinn, M., Romero-García, R., Whitaker, K. J., Vértes, P. E., Wagstyl, K., Reardon, P. K., CLASEN, L. S., Liu, S., et al. (2017) · Neuron · doi:10.1016/j.neuron.2017.11.039 · Cited by 488 · see citing works

Convergent transcriptional specializations in the brains of humans and song-learning birds

Pfenning, A. R., Hara, E., Whitney, O., Rivas, M. V., Wang, R., Roulhac, P. L., Howard, J. T., Wirthlin, M., Lovell, P. V., Ganapathy, G., et al. (2014) · Science · doi:10.1126/science.1256846 · Cited by 463 · see citing works

Bridging the Gap between Connectome and Transcriptome

Fornito, A., Arnatkevičiūtė, A., & Fulcher, B. (2018) · Trends in Cognitive Sciences · doi:10.1016/j.tics.2018.10.005 · Cited by 380 · see citing works

A comprehensive transcriptional map of primate brain development

Bakken, T. E., Miller, J. A., Ding, S., Sunkin, S. M., Smith, K. A., Ng, L., Szafer, A., Dalley, R. A., Royall, J. J., Lemon, T. A., et al. (2016) · Nature · doi:10.1038/nature18637 · Cited by 376 · see citing works

Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons

Cembrowski, M. S., Bachman, J. L., Wang, L., Sugino, K., Shields, B. C., & Spruston, N. (2016) · Neuron · doi:10.1016/j.neuron.2015.12.013 · Cited by 328 · see citing works

Broad transcriptomic dysregulation occurs across the cerebral cortex in ASD

Gandal, M. J., Haney, J. R., Wamsley, B., Yap, C. X., Parhami, S., Emani, P. S., Chang, N., Chen, G. T., Hoftman, G. D., de Alba, D., et al. (2022) · Nature · doi:10.1038/s41586-022-05377-7 · Cited by 281 · see citing works

Development, evolution and pathology of neocortical subplate neurons

Hoerder‐Suabedissen, A., & Molnár, Z. (2015) · Nature reviews. Neuroscience · doi:10.1038/nrn3915 · Cited by 269 · see citing works

Human-Specific Transcriptional Networks in the Brain

Konopka, G., Friedrich, T., Davis‐Turak, J., Winden, K. D., Oldham, M. C., Gao, F., Chen, L., Wang, G.-Z., Luo, R., Preuss, T. M., et al. (2012) · Neuron · doi:10.1016/j.neuron.2012.05.034 · Cited by 264 · see citing works

The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas

Ecker, J. R., Geschwind, D. H., Kriegstein, A. R., Ngai, J., Osten, P., Polioudakis, D., Regev, A., Šestan, N., Wickersham, I. R., & Zeng, H. (2017) · Neuron · doi:10.1016/j.neuron.2017.10.007 · Cited by 254 · see citing works

Human brain evolution: transcripts, metabolites and their regulators

Somel, M., Liu, X., & Khaitovich, P. (2013) · Nature reviews. Neuroscience · doi:10.1038/nrn3372 · Cited by 243 · see citing works

Genomics, convergent neuroscience and progress in understanding autism spectrum disorder

Willsey, H. R., Willsey, A. J., Wang, B., & State, M. W. (2022) · Nature reviews. Neuroscience · doi:10.1038/s41583-022-00576-7 · Cited by 229 · see citing works

Single-cell spatial transcriptome reveals cell-type organization in the macaque cortex

Chen, A., Sun, Y., Lei, Y., Li, C., Liao, S., Meng, J., Bai, Y., Liu, Z., Liang, Z., Zhu, Z., et al. (2023) · Cell · doi:10.1016/j.cell.2023.06.009 · Cited by 232 · see citing works

Loss of Nuclear TDP-43 Is Associated with Decondensation of LINE Retrotransposons

Liu, E. Y., Russ, J., Cali, C. P., Phan, J. M., Amlie-Wolf, A., & Lee, E. B. (2019) · Cell Reports · doi:10.1016/j.celrep.2019.04.003 · Cited by 231 · see citing works

The road to precision psychiatry: translating genetics into disease mechanisms

Gandal, M. J., Leppa, V., Won, H., Parikshak, N. N., & Geschwind, D. H. (2016) · Nature Neuroscience · doi:10.1038/nn.4409 · Cited by 223 · see citing works

The role of long-range connections on the specificity of the macaque interareal cortical network

Markov, N. T., Ercsey-Ravasz, M., Lamy, C., Gomes, A. R. R., Magrou, L., Misery, P., Giroud, P., Barone, P., Dehay, C., Toroczkai, Z., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1218972110 · Cited by 217 · see citing works

Role of radial glial cells in cerebral cortex folding

Borrell, V., & Götz, M. (2014) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2014.02.007 · Cited by 221 · see citing works

Shaping Our Minds: Stem and Progenitor Cell Diversity in the Mammalian Neocortex

Franco, S. J., & Müller, U. (2013) · Neuron · doi:10.1016/j.neuron.2012.12.022 · Cited by 219 · see citing works

Transcriptome-wide Discovery of microRNA Binding Sites in Human Brain

Boudreau, R. L., Jiang, P., Gilmore, B. L., Spengler, R. M., Tirabassi, R., Nelson, J. A., Ross, C. A., Xing, Y., & Davidson, B. L. (2014) · Neuron · doi:10.1016/j.neuron.2013.10.062 · Cited by 217 · see citing works

Transcriptomic cytoarchitecture reveals principles of human neocortex organization

Jorstad, N. L., Close, J., Johansen, N., Yanny, A. M., Barkan, E. R., Travaglini, K. J., Bertagnolli, D., Campos, J., Casper, T., Crichton, K., et al. (2023) · Science · doi:10.1126/science.adf6812 · Cited by 209 · see citing works

Mechanisms of Neuronal Computation in Mammalian Visual Cortex

Priebe, N. J., & Ferster, D. (2012) · Neuron · doi:10.1016/j.neuron.2012.06.011 · Cited by 209 · see citing works

Structural covariance networks are coupled to expression of genes enriched in supragranular layers of the human cortex

Romero-García, R., Whitaker, K. J., Váša, F., Seidlitz, J., Shinn, M., Fonagy, P., Dolan, R. J., Jones, P. B., Goodyer, I. M., Bullmore, E. T., et al. (2017) · NeuroImage · doi:10.1016/j.neuroimage.2017.12.060 · Cited by 188 · see citing works

Variation among intact tissue samples reveals the core transcriptional features of human CNS cell classes

Kelley, K. W., Nakao-Inoue, H., Molofsky, A. V., & Oldham, M. C. (2018) · Nature Neuroscience · doi:10.1038/s41593-018-0216-z · Cited by 198 · see citing works

Transcriptional profiles of supragranular-enriched genes associate with corticocortical network architecture in the human brain

Krienen, F. M., Yeo, B. T. T., Ge, T., Buckner, R. L., & Sherwood, C. C. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1510903113 · Cited by 190 · see citing works

Layer- and Cell Type-Specific Modulation of Excitatory Neuronal Activity in the Neocortex

Radnikow, G., & Feldmeyer, D. (2018) · Frontiers in Neuroanatomy · doi:10.3389/fnana.2018.00001 · Cited by 180 · see citing works

Cerebral cortex : principles of operation

Rolls, E. T. (2016) · doi:10.82444/warw.33712699 · Cited by 187 · see citing works

Organization and Evolution of Brain Lipidome Revealed by Large-Scale Analysis of Human, Chimpanzee, Macaque, and Mouse Tissues

Bożek, K., Wei, Y., Zheng, Y., Liu, X., Xiong, J., Sugimoto, M., Tomita, M., Pääbo, S., Sherwood, C. C., Hof, P. R., et al. (2015) · Neuron · doi:10.1016/j.neuron.2015.01.003 · Cited by 175 · see citing works

LRP8-Reelin-regulated neuronal enhancer signature underlying learning and memory formation

Telese, F., Ma, Q., Perez, P. M., Notani, D., Oh, S., Li, W., Comoletti, D., Ohgi, K. A., Taylor, H., & Rosenfeld, M. G. (2015) · Neuron · doi:10.1016/j.neuron.2015.03.033 · Cited by 166 · see citing works

Opportunities and challenges in modeling human brain disorders in transgenic primates

Jennings, C. G. B., Landman, R., Zhou, Y., Sharma, J., Hyman, J. B., Movshon, J. A., Qiu, Z., Roberts, A., Roe, A. W., Wang, X., et al. (2016) · Nature Neuroscience · doi:10.1038/nn.4362 · Cited by 140 · see citing works

Comprehensive transcriptome analysis of neocortical layers in humans, chimpanzees and macaques

He, Z., Han, D., Efimova, O., Guijarro, P., Yu, Q., Oleksiak, A., Jiang, S., Anokhin, K. V., Velichkovsky, B. M., Grünewald, S., et al. (2017) · Nature Neuroscience · doi:10.1038/nn.4548 · Cited by 136 · see citing works

A genuine layer 4 in motor cortex with prototypical synaptic circuit connectivity

Yamawaki, N., Borges, K., Suter, B. A., Harris, K. D., & Shepherd, G. M. G. (2014) · eLife · doi:10.7554/elife.05422 · Cited by 141 · see citing works

Gene expression links functional networks across cortex and striatum

Anderson, K. M., Krienen, F. M., Choi, E. Y., Reinen, J. M., Yeo, B. T. T., & Holmes, A. J. (2018) · Nature Communications · doi:10.1038/s41467-018-03811-x · Cited by 138 · see citing works

A Laminar Organization for Selective Cortico-Cortical Communication

D’Souza, R. D., & Burkhalter, A. (2017) · Frontiers in Neuroanatomy · doi:10.3389/fnana.2017.00071 · Cited by 138 · see citing works

Genetic Changes Shaping the Human Brain

Bae, B.-I., Jayaraman, D., & Walsh, C. A. (2015) · Developmental Cell · doi:10.1016/j.devcel.2015.01.035 · Cited by 135 · see citing works

Correlated gene expression and target specificity demonstrate excitatory projection neuron diversity

Sorensen, S. A., Bernard, A., Menon, V., Royall, J. J., Glattfelder, K. J., Desta, T., Hirokawa, K., Mortrud, M., Miller, J. A., Zeng, H., et al. (2015) · Cerebral Cortex · doi:10.1093/cercor/bht243 · Cited by 131 · see citing works

The Diameter of Cortical Axons Depends Both on the Area of Origin and Target

Innocenti, G. M., Vercelli, A., & Caminiti, R. (2013) · Cerebral Cortex · doi:10.1093/cercor/bht070 · Cited by 130 · see citing works

Canonical computations of cerebral cortex

Miller, K. D. (2016) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2016.01.008 · Cited by 130 · see citing works

Human-Specific Histone Methylation Signatures at Transcription Start Sites in Prefrontal Neurons

Shulha, H. P., Crisci, J. L., Reshetov, D. A., Tushir, J. S., Cheung, I. K., Bharadwaj, R. A., Chou, H.-J., Houston, I. B., Peter, C. J., Mitchell, A., et al. (2012) · PLoS Biology · doi:10.1371/journal.pbio.1001427 · Cited by 123 · see citing works

Selective vulnerability of layer 5a corticostriatal neurons in Huntington’s disease

Pressl, C., Mätlik, K., Kus, L., Darnell, P., Luo, J., Paul, M. R., Weiss, A. R., Liguore, W. A., Carroll, T. S., Davis, D. A., et al. (2024) · Neuron · doi:10.1016/j.neuron.2023.12.009 · Cited by 101 · see citing works

Rapid and efficient genetic manipulation of gyrencephalic carnivores using in utero electroporation

Kawasaki, H., Iwai, L., & Tanno, K. (2012) · Molecular Brain · doi:10.1186/1756-6606-5-24 · Cited by 88 · see citing works

Evolution and development of the mammalian cerebral cortex

Molnár, Z., Kaas, J. H., de Carlos, J. A., Hevner, R. F., Lein, E., & Němec, P. (2014) · Brain Behavior and Evolution · doi:10.1159/000357753 · Cited by 93 · see citing works

Transcriptomic Perspectives on Neocortical Structure, Development, Evolution, and Disease

Lein, E. S., Belgard, T. G., Hawrylycz, M., & Molnár, Z. (2017) · Annual Review of Neuroscience · doi:10.1146/annurev-neuro-070815-013858 · Cited by 92 · see citing works

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

Bakken, T. E., Jorstad, N. L., Hu, Q., Lake, B. B., Tian, W., Kalmbach, B. E., Crow, M., Hodge, R. D., Krienen, F. M., Sorensen, S. A., et al. (2020) · doi:10.1101/2020.03.31.016972 · Cited by 809 · see citing works

Big Science, Team Science, and Open Science for Neuroscience

Koch, C., & Jones, A. R. (2016) · Neuron · doi:10.1016/j.neuron.2016.10.019 · Cited by 88 · see citing works

The human cerebral cortex is neither one nor many: neuronal distribution reveals two quantitatively different zones in the gray matter, three in the white matter, and explains local variations in cortical folding

Ribeiro, P. F. M., Ventura-Antunes, L., Gabi, M., Mota, B., Grinberg, L. T., Farfel, J. M., Ferretti-Rebustini, R. E. L., Leite, R. E. P., Filho, W. J., & Herculano-Houzel, S. (2013) · Frontiers in Neuroanatomy · doi:10.3389/fnana.2013.00028 · Cited by 89 · see citing works

Cerebral cortex assembly: generating and reprogramming projection neuron diversity

Lodato, S., Shetty, A. S., & Arlotta, P. (2014) · Trends in Neurosciences · doi:10.1016/j.tins.2014.11.003 · Cited by 86 · see citing works

Conserved molecular signatures of neurogenesis in the hippocampal subgranular zone of rodents and primates

Miller, J. A., Nathanson, J. L., Franjic, D., Shim, S., Dalley, R. A., Shapouri, S., Smith, K. A., Sunkin, S. M., Bernard, A., Bennett, J. L., et al. (2013) · Development · doi:10.1242/dev.097212 · Cited by 86 · see citing works

Continuous Variation within Cell Types of the Nervous System

Cembrowski, M. S., & Menon, V. (2018) · Trends in Neurosciences · doi:10.1016/j.tins.2018.02.010 · Cited by 80 · see citing works

First glimpses of the neurobiology of autism spectrum disorder

Sanders, S. J. (2015) · Current Opinion in Genetics &amp; Development · doi:10.1016/j.gde.2015.10.002 · Cited by 84 · see citing works

Adult pallium transcriptomes surprise in not reflecting predicted homologies across diverse chicken and mouse pallial sectors

Belgard, T. G., Montiel, J. F., Wang, W. Z., García‐Moreno, F., Margulies, E. H., Ponting, C. P., & Molnár, Z. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1307444110 · Cited by 82 · see citing works

Organisational and neuromodulatory underpinnings of structural-functional connectivity decoupling in patients with Parkinson’s disease

Zarkali, A., McColgan, P., Leyland, L., Lees, A. J., Rees, G. E., & Weil, R. S. (2021) · Communications Biology · doi:10.1038/s42003-020-01622-9 · Cited by 82 · see citing works

Towards a unified scheme of cortical lamination for primary visual cortex across primates: insights from NeuN and VGLUT2 immunoreactivity

Balaram, P., & Kaas, J. H. (2014) · Frontiers in Neuroanatomy · doi:10.3389/fnana.2014.00081 · Cited by 82 · see citing works

Progenitor cell diversity in the developing mouse neocortex

Ruan, X., Kang, B., Qi, C., Lin, W., Wang, J., & Zhang, X. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2018866118 · Cited by 71 · see citing works

Brain Transcriptome Databases: A User's Guide

Keil, J. M., Qalieh, A., & Kwan, K. Y. (2018) · Journal of Neuroscience · doi:10.1523/jneurosci.1930-17.2018 · Cited by 74 · see citing works

New pathogenic insights from large animal models of neurodegenerative diseases

Yin, P., Li, S., Li, X., & Yang, W. (2022) · Protein & Cell · doi:10.1007/s13238-022-00912-8 · Cited by 79 · see citing works

Do domain-general executive resources play a role in linguistic prediction? Re-evaluation of the evidence and a path forward

Ryskin, R. A., Lévy, R., & Fedorenko, E. G. (2019) · Neuropsychologia · doi:10.1016/j.neuropsychologia.2019.107258 · Cited by 74 · see citing works

hPSC Modeling Reveals that Fate Selection of Cortical Deep Projection Neurons Occurs in the Subplate

Ozair, M. Z., Kirst, C., van den Berg, B. L., Ruzo, A., Rito, T., & Brivanlou, A. H. (2018) · Cell stem cell · doi:10.1016/j.stem.2018.05.024 · Cited by 72 · see citing works

Manipulating Gene Expression in Projection‐Specific Neuronal Populations Using Combinatorial Viral Approaches

Gore, B. B., Soden, M. E., & Zweifel, L. S. (2013) · Current Protocols in Neuroscience · doi:10.1002/0471142301.ns0435s65 · Cited by 74 · see citing works

High-resolution gene expression atlases for adult and developing mouse brain and spinal cord

Henry, A. M., & Hohmann, J. G. (2012) · Mammalian Genome · doi:10.1007/s00335-012-9406-2 · Cited by 70 · see citing works

Evolution of Gene Regulation in Humans

Reilly, S. K., & Noonan, J. P. (2016) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev-genom-090314-045935 · Cited by 67 · see citing works

Neurodevelopmental disorders—high-resolution rethinking of disease modeling

Khodosevich, K., & Sellgren, C. M. (2022) · Molecular Psychiatry · doi:10.1038/s41380-022-01876-1 · Cited by 64 · see citing works

A Distinct Class of Bursting Neurons with Strong Gamma Synchronization and Stimulus Selectivity in Monkey V1

Onorato, I., Neuenschwander, S., Hoy, J. L., Lima, B., Rocha, K.-S., Broggini, A. C., Uran, C., Spyropoulos, G., Klon-Lipok, J., Womelsdorf, T., et al. (2019) · Neuron · doi:10.1016/j.neuron.2019.09.039 · Cited by 63 · see citing works

Molecular anatomy of the thalamic complex and the underlying transcription factors

Nagalski, A., Puelles, L., Dąbrowski, M., Węgierski, T., Kuźnicki, J., & Wisniewska, M. B. (2015) · Brain Structure and Function · doi:10.1007/s00429-015-1052-5 · Cited by 64 · see citing works

In vivo genetic manipulation of cortical progenitors in gyrencephalic carnivores using in utero electroporation

Kawasaki, H., Toda, T., & Tanno, K. (2012) · Biology Open · doi:10.1242/bio.20123160 · Cited by 65 · see citing works

A comprehensive study of a 29-capsid AAV library in a non-human primate central nervous system

Kondratov, O., Kondratova, L., Mandel, R. J., Coleman, K. E., Savage, M. A., Gray‐Edwards, H. L., Ness, T. J., Rodríguez-Lebrón, E., Bell, R. D., Rabinowitz, J. E., et al. (2021) · Molecular Therapy · doi:10.1016/j.ymthe.2021.07.010 · Cited by 65 · see citing works

Distinct Properties of Layer 3 Pyramidal Neurons from Prefrontal and Parietal Areas of the Monkey Neocortex

González‐Burgos, G., Miyamae, T., Krimer, Y., Gulchina, Y., Pafundo, D. E., Krimer, O. L., Bazmi, H. H., Arion, D., Enwright, J. F., Fish, K. N., et al. (2019) · Journal of Neuroscience · doi:10.1523/jneurosci.1210-19.2019 · Cited by 60 · see citing works

Toward understanding thalamocortical dysfunction in schizophrenia through computational models of neural circuit dynamics

Murray, J. D., & Anticevic, A. (2016) · Schizophrenia Research · doi:10.1016/j.schres.2016.10.021 · Cited by 62 · see citing works

Differential expression of vesicular glutamate transporters 1 and 2 may identify distinct modes of glutamatergic transmission in the macaque visual system

Balaram, P., Hackett, T. A., & Kaas, J. H. (2013) · Journal of Chemical Neuroanatomy · doi:10.1016/j.jchemneu.2013.02.007 · Cited by 60 · see citing works

DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements

Wilken, M. S., Brzezinski, J. A., Torre, A. L., Siebenthall, K. T., Thurman, R. E., Sabo, P. J., Sandstrom, R. S., Vierstra, J. D., Canfield, T. K., Hansen, R. S., et al. (2015) · Epigenetics & Chromatin · doi:10.1186/1756-8935-8-8 · Cited by 57 · see citing works

Altered Gradients of Glutamate and Gamma-Aminobutyric Acid Transcripts in the Cortical Visuospatial Working Memory Network in Schizophrenia

Hoftman, G. D., Dienel, S. J., Bazmi, H. H., Zhang, Y., Chen, K., & Lewis, D. A. (2017) · Biological Psychiatry · doi:10.1016/j.biopsych.2017.11.029 · Cited by 60 · see citing works

Levels of Homology and the Problem of Neocortex

Dugas‐Ford, J., & Ragsdale, C. W. (2015) · Annual Review of Neuroscience · doi:10.1146/annurev-neuro-071714-033911 · Cited by 58 · see citing works

Predicting visual acuity from the structure of visual cortex

Srinivasan, S., Carlo, C. N., & Stevens, C. F. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1509282112 · Cited by 55 · see citing works

The architecture of mammalian cortical connectomes in light of the theory of the dual origin of the cerebral cortex

Goulas, A., Margulies, D. S., Bezgin, G., & Hilgetag, C. C. (2019) · Cortex · doi:10.1016/j.cortex.2019.03.002 · Cited by 54 · see citing works

Identification of visual cortex cell types and species differences using single-cell RNA sequencing

Wei, J.-R., Hao, Z.-Z., Xu, C., Huang, M., Tang, L., Xu, N., Liu, R., Shen, Y., Teichmann, S. A., Miao, Z., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-34590-1 · Cited by 55 · see citing works

Cortical microstructural gradients capture memory network reorganization in temporal lobe epilepsy

Royer, J., Larivière, S., Rodríguez‐Cruces, R., Cabalo, D. G., Tavakol, S., Auer, H., Ngo, A., Park, B., Paquola, C., Smallwood, J., et al. (2023) · Brain · doi:10.1093/brain/awad125 · Cited by 53 · see citing works

Spatial patterns of genome‐wide expression profiles reflect anatomic and fiber connectivity architecture of healthy human brain

Goel, P., Kuceyeski, A. F., LoCastro, E., & Raj, A. (2014) · Human Brain Mapping · doi:10.1002/hbm.22471 · Cited by 49 · see citing works

The future of human cerebral cartography: a novel approach

Frackowiak, R. S. J., & Markram, H. (2015) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2014.0171 · Cited by 45 · see citing works

Human visual cortex is organized along two genetically opposed hierarchical gradients with unique developmental and evolutionary origins

Gomez, J., Zhen, Z., & Weiner, K. S. (2019) · PLoS Biology · doi:10.1371/journal.pbio.3000362 · Cited by 49 · see citing works

Post-transcriptional regulatory elements and spatiotemporal specification of neocortical stem cells and projection neurons

DeBoer, E., Kraushar, M. L., Hart, R. P., & Rašin, M. (2013) · Neuroscience · doi:10.1016/j.neuroscience.2013.05.042 · Cited by 45 · see citing works

Evolutionary Divergence of Gene and Protein Expression in the Brains of Humans and Chimpanzees

Bauernfeind, A. L., Soderblom, E. J., Turner, M. E., Moseley, M. A., Ely, J. J., Hof, P. R., Sherwood, C. C., Wray, G. A., & Babbitt, C. C. (2015) · Genome Biology and Evolution · doi:10.1093/gbe/evv132 · Cited by 43 · see citing works

Strategies for targeting primate neural circuits with viral vectors

El-Shamayleh, Y., Ni, A. M., & Horwitz, G. D. (2016) · Journal of Neurophysiology · doi:10.1152/jn.00087.2016 · Cited by 45 · see citing works

Virus stamping for targeted single-cell infection in vitro and in vivo

Schubert, R., Trenholm, S., Bálint, K., Kosche, G., Cowan, C. S., Mohr, M. A., Munz, M., Martínez-Martín, D., Fläschner, G., Newton, R., et al. (2017) · Nature Biotechnology · doi:10.1038/nbt.4034 · Cited by 45 · see citing works

Spatially resolved gene regulatory and disease-related vulnerability map of the adult Macaque cortex

Lei, Y., Cheng, M., Li, Z., Zhuang, Z., Wu, L. L., Sun, Y., Han, L., Huang, Z., Wang, Y., Wang, Z., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-34413-3 · Cited by 47 · see citing works

Generating new neurons to circumvent your fears: the role of IGF signaling

Agís‐Balboa, R. C., & Fischer, A. (2013) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-013-1316-2 · Cited by 41 · see citing works

Investigating mechanisms underlying neurodevelopmental phenotypes of autistic and intellectual disability disorders: a perspective

Kroon, T., Sierksma, M. C., & Meredith, R. (2013) · Frontiers in Systems Neuroscience · doi:10.3389/fnsys.2013.00075 · Cited by 56 · see citing works

Why data coherence and quality is critical for understanding interareal cortical networks

Kennedy, H., Kenneth Knoblauch, B., & Toroczkai, Z. (2013) · NeuroImage · doi:10.1016/j.neuroimage.2013.04.031 · Cited by 43 · see citing works

Primate Neuronal Connections are Sparse as Compared to Mouse

Wildenberg, G. A., Rosen, M. C., Lundell, J., Paukner, D., Freedman, D. J., & Kasthuri, N. (2020) · Cell Reports · doi:10.1016/j.celrep.2021.109709 · Cited by 46 · see citing works

Genomic divergence and brain evolution: How regulatory DNA influences development of the cerebral cortex

Silver, D. L. (2015) · BioEssays · doi:10.1002/bies.201500108 · Cited by 41 · see citing works

Spatiotemporal dynamics of the postnatal developing primate brain transcriptome

Bakken, T. E., Miller, J. A., Luo, R., Bernard, A., Bennett, J. L., Lee, C., Bertagnolli, D., Parikshak, N., Smith, K. A., Sunkin, S. M., et al. (2015) · Human Molecular Genetics · doi:10.1093/hmg/ddv166 · Cited by 40 · see citing works

MECP2 Duplication Causes Aberrant GABA Pathways, Circuits and Behaviors in Transgenic Monkeys: Neural Mappings to Patients with Autism

Cai, D.-C., Wang, Z., Bo, T., Yan, S., Liu, Z., Liu, Z., Zeljic, K., Chen, X., Zhan, Y., Du, Y., et al. (2020) · Journal of Neuroscience · doi:10.1523/jneurosci.2727-19.2020 · Cited by 38 · see citing works

How unique is the human neocortex?

Molnár, Z., & Pollen, A. A. (2013) · Development · doi:10.1242/dev.101279 · Cited by 38 · see citing works

Transcriptional regulation of the MET receptor tyrosine kinase gene by MeCP2 and sex-specific expression in autism and Rett syndrome

Plummer, J., Evgrafov, O., Bergman, M., Friez, M., Haiman, C., Levitt, P., & Aldinger, K. (2013) · Translational Psychiatry · doi:10.1038/tp.2013.91 · Cited by 37 · see citing works

BrainScope: interactive visual exploration of the spatial and temporal human brain transcriptome

Huisman, S. M. H., van Lew, B., Mahfouz, A. E., Pezzotti, N., Höllt, T., Michielsen, L., Vilanova, A., Reinders, M. J. T., & Lelieveldt, B. P. F. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkx046 · Cited by 33 · see citing works

The impact of (ab)normal maternal environment on cortical development

Vasistha, N. A., & Khodosevich, K. (2021) · Progress in Neurobiology · doi:10.1016/j.pneurobio.2021.102054 · Cited by 36 · see citing works

Transcriptional Profiling of Layers of the Primate Cerebral Cortex

Molnár, Z., & Belgard, T. G. (2012) · Neuron · doi:10.1016/j.neuron.2012.03.007 · Cited by 8 · see citing works

Selective gene expression in regions of primate neocortex: Implications for cortical specialization

Yamamori, T. (2011) · Progress in Neurobiology · doi:10.1016/j.pneurobio.2011.04.008 · Cited by 36 · see citing works

Brain-wide and cell-specific transcriptomic insights into MRI-derived cortical morphology in macaque monkeys

Bo, T., Li, J., Hu, G., Zhang, G., Wang, W., Lv, Q., Zhao, S., Ma, J., Qin, M., Yao, X., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-37246-w · Cited by 25 · see citing works

Single-cell spatial transcriptome reveals cell-type organization in the macaque cortex

Chen, A., Sun, Y., Lei, Y., Li, C., Liao, S., Meng, J., Bai, Y., Liu, Z., Liang, Z., Zhu, Z., et al. (2023) · Cell · doi:10.1016/j.cell.2023.06.009 · Cited by 232 · see citing works

Differentially expressed genes among motor and prefrontal areas of macaque neocortex

Sato, A., Nishimura, Y., Oishi, T., Higo, N., Murata, Y., Onoe, H., Saito, K., Tsuboi, F., Takahashi, M., Isa, T., et al. (2007) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2007.08.039 · Cited by 11 · see citing works