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Astrocytic ApoE reprograms neuronal cholesterol metabolism and histone-acetylation-mediated memory
Open accessAbstract
Astrocytes metabolically interact with neighboring neurons by providing multiple substances to neurons. How astrocytes regulate neural functions via altering the neuronal metabolic state remains elusive. Here, we demonstrate that astrocytic ApoE vectors a variety of microRNAs (miRNAs), and these miRNAs specifically silence genes involved in neuronal cholesterol biosynthesis, ultimately accounting for accumulation of the pathway-initiating substrate acetyl-CoA. Consequently, histone acetylation is promoted, and transcription is activated in neurons. Functionally, we demonstrate that ApoE-mediated neuronal histone acetylation leads to increased H3K27ac enrichment in the promoters of multiple neuronal immediate early genes and subsequently to enhanced memory consolidation in mice. Importantly, human ApoE4 vectors lower levels of miRNAs than ApoE3 and therefore is less capable of metabolic and epigenetic regulation in neurons. Collectively, our findings define an astrocytic ApoE-mediated neuronal epigenetic mechanism as a novel means through which astrocytes modulate brain connectivity and function.
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“Of note, sApoE has been found to influence the transcriptome by modulating histone acetylation (68, 69).”
From Secreted Apoe rewires melanoma cell state vulnerability to ferroptosis (2024) · cites this paper as [68]
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“These miRNAs inhibit cholesterol synthesis de novo at the epigenetic level and enhance memory consolidation [66].”
Nuclear dynamics and stress responses in Alzheimer’s disease
Iatrou, A., Clark, E. M., & Wang, Y. (2021) · Molecular Neurodegeneration · doi:10.1186/s13024-021-00489-6 · Cited by 31
“cultured neurons, which subsequently enhanced transcription of neuronal immediate early genes (IEGs) that favor memory consolidation [42].”
BackgroundPerioperative neurocognitive disorders: Advances in molecular mechanisms and bioactive molecules
Mao, L., Wang, L., Huang, Z., Switzer, J. A., Hess, D. C., & Zhang, Q. (2025) · Ageing Research Reviews · doi:10.1016/j.arr.2025.102885 · Cited by 24
“During neurodevelopment, histone acetyltransferases enhance the transcriptional responsiveness of neuronal gene networks, such as immediate early genes, thereby facilitating memory consolidation in mice (Mews et al., 2017; Li et al., 2021b).”
Autophagy in alzheimer disease pathogenesis and its therapeutic values
Angst, G., Jia, N., Esqueda, L. T., Fan, Y., Cai, Q., & Wang, C. (2025) · Autophagy Reports · doi:10.1080/27694127.2025.2471677 · Cited by 22
Yu, W., Li, Y., Zhong, F., Deng, Z., Wu, J., Yu, W., & Lü, Y. (2024) · Cellular and Molecular Neurobiology · doi:10.1007/s10571-024-01453-w · Cited by 25
“The primary antibodies used in this study were validated and widely used in previous publications, including WWTR1 (Hu et al. 2021), GFAP (Boivin et al. 2021), IBA1(Xu et al. 2021a), NEUN(Li et al. 2021), HRP-conjugated β-actin (Shiraishi et al. 2023).”
Dai, X., Lin, A., Zhuang, L.-P., Zeng, Q., Cai, L., Wei, Y., Liang, H., Gao, W., Zhang, J., & Chen, X. (2023) · Neuropsychopharmacology · doi:10.1038/s41386-023-01775-1 · Cited by 24
“These modi fi cations include the acetylation of lysine residues that leads to active gene transcription related to long-term synaptic plasticity and memory [12 – 15].”
Self-citationHe, Z., Liu, Y., Li, Z., Sun, T., Li, Z., Manyande, A., Xiang, H., & Xiong, J. (2023) · Hepatology International · doi:10.1007/s12072-023-10509-w · Cited by 18
“Data from Li et al. also indicated that neuronal cholesterol metabolism in the hippocampus is closely related to memory histone acetylation-mediated memory [27].”
BackgroundMicroglial apolipoprotein E particles contribute to neuronal senescence and synaptotoxicity
Wang, N., Cai, L., Pei, X., Lin, Z., Huang, L., Liang, C., Wei, M., Shao, L., Guo, T., Huang, F., et al. (2024) · iScience · doi:10.1016/j.isci.2024.110006 · Cited by 18
“42 However, the impact of different APOE isoforms expressed by microglia on neurite outgrowth remains unclear.”
Self-citationЛю, Ч., Liu, J., Wang, Y., Xu, S.-F., & Yu, L.-M. (2025) · Molecular Neurobiology · doi:10.1007/s12035-025-05629-3 · Cited by 22
“Recent reports have revealed that these cargoes are the basis for mediating cell-to-cell communication using APOE particles [13, 14].”
InfluentialZhang, W.-X., Yang, Y.-L., Yu, J., Jia, L., & Huang, H. (2025) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2025.152335 · Cited by 19
Potential role of Bcl2 in lipid metabolism and synaptic dysfunction of age-related hearing loss
Liu, Y., Zhang, H., Fan, C., Liu, F., Li, S., Li, J., Zhao, H., & Zeng, X. (2023) · Neurobiology of Disease · doi:10.1016/j.nbd.2023.106320 · Cited by 19
“…in the central nervous system for synaptic and dendrite formation, as well as its involvement in axon guidance and participation as a precursor in various biosynthetic pathways (Barres and Smith, 2001; Ferris et al., 2017; Fünfschilling et al., 2012; Korade and Kenworthy, 2008; X. Li et al., 2021).”
BackgroundPiccarducci, R., Giacomelli, C., Bertilacchi, M. S., Benito-Martínez, A., Giorgi, N. D., Daniele, S., Signore, G., Rocchiccioli, S., Vilar, M., Marchetti, L., et al. (2023) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/j.bbadis.2023.166793 · Cited by 19
Zhang, Q., Fang, Y., Lv, C., Zhu, Y., Xia, Y., Wei, Z., & Dai, Y. (2022) · The FASEB Journal · doi:10.1096/fj.202101643r · Cited by 21
He, K., Zhang, J., Zhang, W., Wang, S., Li, D., Ma, X., Wu, X., Chai, X., & Liu, Q. (2022) · Frontiers in Aging Neuroscience · doi:10.3389/fnagi.2022.772066 · Cited by 20
“Immunofluorescence Staining Immunofluorescence staining was performed as described previously (Li et al., 2021).”
MethodSelf-citationAstrocyte Lipid Droplet Dynamics Orchestrate Neurological Disorders and Therapeutic Horizons
Zhong, J., Peng, Y., Zhang, L., Xiao, B., & Zhang, M. (2025) · Small Science · doi:10.1002/smsc.202500152 · Cited by 17
Santana, D. A., Bedrat, A., Puga, R., Turecki, G., Mechawar, N., Faria, T. C., Gigek, C. O., Payão, S. L. M., Smith, M. D. A. C., Lemos, B., et al. (2022) · Epigenomics · doi:10.2217/epi-2022-0096 · Cited by 19
Emerging Role of Oligodendrocytes Malfunction in the Progression of Alzheimer's Disease
Tylek, K., & Basta‐Kaim, A. (2025) · Journal of Neuroimmune Pharmacology · doi:10.1007/s11481-025-10236-z · Cited by 19
“Conversely, ApoE4 undermines astrocytic support for neurons, manifesting in mitochondrial dysfunction and impaired lipid metabolism in neurons, as well as the upregulation of proinflammatory genes in microglia (Preman et al. 2024; Li et al. 2021; Qi et al. 2021).”
Ferroptosis: A new strategy for targeting Alzheimer’s disease
Qiang, R. R., Xiang, Y., Zhang, L., Bai, X. Y., Zhang, D., Li, Y. J., Yang, Y. L., & Liu, X. L. (2024) · Neurochemistry International · doi:10.1016/j.neuint.2024.105773 · Cited by 15
Maltsev, A. V., Roshchin, M. V., Борисович, Б. И., Смирнов, И. В., Власова, О. Л., Balaban, P. M., & Borodinova, A. A. (2022) · Hippocampus · doi:10.1002/hipo.23486 · Cited by 16
“Growing evidences suggest that astrocytes can release different active molecules, which alter neuronal metabolism and potentiate transcription and translation of neuronal plasticity-related genes (Yang et al., 2014; Descalzi et al., 2019; Li et al., 2021; Salmina et al., 2021).”
BackgroundWang, X., Tang, X., Zhu, P., Hua, D., Xie, Z., Guo, M., Que, M., Yan, J., Li, X., Qian, X., et al. (2024) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-024-05156-9 · Cited by 16
“In terms of glia-neuron crosstalk, astrocytic apolipoprotein can transport miRNAs that silence pivotal enzymes involved in cholesterol synthesis and promote histone acetylation in neurons [35].”
BackgroundSelf-citationLi, L., Du, L.-X., Gan, G., Li, J., Yang, L., Wu, Y., Fang, Z., & Zhang, X. (2024) · CNS Neuroscience & Therapeutics · doi:10.1111/cns.14758 · Cited by 8
“31 Furthermore, Li Q et al. confirmation that microglia lipid droplet accumulation is associated with diabetes-related cognitive dysfunction.”
BackgroundKey genes in the liver fibrosis process are mined based on single-cell transcriptomics
Ai, L., Wang, Q., & Cheng, K. (2022) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2022.01.094 · Cited by 15
Wang, Q., Gao, F., Dai, L., Zhang, J., Bi, D., & Shen, Y. (2022) · The Journal of Prevention of Alzheimer s Disease · doi:10.14283/jpad.2022.46 · Cited by 16
Self-citationLu, M., He, R., Li, C., Liu, Z., Chen, Y., Yang, B., Zhang, X., & Yu, B. (2023) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2023.1187543 · Cited by 11
“Though ApoE is mostly linked to cholesterol efflux and reverse cholesterol transport, it is reported that astrocytic ApoE vectors a variety of microRNAs (miRNAs) that specifically silence genes involved in neuronal cholesterol biosynthesis (Li et al., 2021).”
BackgroundXu, C., Liu, J., Guo, M., Wang, J., Bai, X., Zhang, C., Luan, X., Pei, H., Liu, H., Lv, X., et al. (2025) · Research · doi:10.34133/research.0746 · Cited by 8
“Moreover, specific knockdown of ApoE in hippocampal astrocytes induces notable learning and memory deficits [ 11 ].”
InfluentialSelf-citationLiu, X.-T., Huang, C., Wang, M.-Y., Hu, L.-G., Song, Y., & Jiang, G.-B. (2025) · Environmental Science and Technology · doi:10.1021/acs.est.5c00613 · Cited by 10
Paiva, I., Séguin, J., Grgurina, I., Singh, A. K., Cosquer, B., Plassard, D., Tzeplaeff, L., Gras, S. L., Cotellessa, L., Decraene, C., et al. (2024) · Neurobiology of Disease · doi:10.1016/j.nbd.2024.106538 · Cited by 12
“…of cholesterol in the cytoplasmic compartment (Miziorko, 2011) and protein acetylation in the nucleus (Wellen et al., 2009), downregulation of the cholesterol/mevalonate pathway might therefore enhance acetyl-CoA availability to increase histone acetylation as seen in the Li et al. (2021) study.”
InfluentialLiu, N., Yu, W., Sun, M., Zhou, D., Sun, J., Jiang, T., Zhang, W., & Wang, M. (2024) · Heliyon · doi:10.1016/j.heliyon.2024.e29418 · Cited by 10
Targeting lipid metabolism in neurodegenerative diseases: From experimental to clinical
Long, J., Liu, S., Shi, Y., Zhang, C., Li, Q., & Ai, Q. (2025) · Metabolism · doi:10.1016/j.metabol.2025.156436 · Cited by 12
Self-citationAlzheimer's disease phenotype based upon the carrier status of the apolipoprotein E ɛ4 allele
Ji, X., Peng, X., Tang, H., Pan, H., Wang, W. D., Wu, J., Chen, J., & Wei, N. (2023) · Brain Pathology · doi:10.1111/bpa.13208 · Cited by 9
“Multiple microRNAs of astrocytes play a role in regulating CL synthesis in neurons by increasing histone acyl-coenzymes and stimulating CL metabolism [28].”
BackgroundEpigenetic Regulation of Cholesterol and Oxysterol Homeostasis.
Feng, W., Yang, K., Ju, M., Wang, T., & Xiao, R. (2025) · Nutrition reviews · doi:10.1093/nutrit/nuaf082 · Cited by 8
Min, J.-H., Sarlus, H., & Harris, R. A. (2024) · Frontiers in Neuroscience · doi:10.3389/fnins.2024.1467333 · Cited by 11
Gong, F., Shi, Q., Mou, X., Wang, K., Wang, Q.-Q., & Wang, H. (2023) · Aging · doi:10.18632/aging.205217 · Cited by 8
Diaz, J. R., Martá-Ariza, M., Khodadadi‐Jamayran, A., Heguy, A., Tsirigos, A., Pankiewicz, J. E., Sullivan, P. M., & Sadowski, M. J. (2022) · Frontiers in Aging Neuroscience · doi:10.3389/fnagi.2022.845291 · Cited by 11
“It also has been suggested that apoE lipoproteins may contain RNA species of astrocytic origin and those upon the lipoprotein internalization may regulate neuronal lipid metabolism (Li et al., 2021).”
BackgroundMicroRNAs on the move: microRNAs in astrocyte-derived ApoE particles regulate neuronal function
Karahan, H., Dabin, L. C., Tate, M. D., & Kim, J. (2021) · Neuron · doi:10.1016/j.neuron.2021.02.021 · Cited by 7
Metabolism and metabolomics in senescence, aging, and age-related diseases: a multiscale perspective
Wang, Z., Zhu, H., & Xiong, W. (2025) · Frontiers of Medicine · doi:10.1007/s11684-024-1116-0 · Cited by 7
Bidirectional Control between Cholesterol Shuttle and Purine Signal at the Central Nervous System
Passarella, D., Ronci, M., Liberto, V. D., Zuccarini, M., Mudò, G., Porcile, C., Frinchi, M., Iorio, P. D., Ulrich, H., & Russo, C. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23158683 · Cited by 7
“Of note, it has recently been reported that ApoE also transports miRNAs, which inhibit the expression of genes promoting cholesterol synthesis in neurons [32].”
BackgroundWang, J., Li, K., Wang, Y., Zhang, J., Peng, X., & Ji, N. (2025) · Frontiers in Molecular Biosciences · doi:10.3389/fmolb.2025.1704311 · Cited by 7
Self-citationSafieh, M., Liraz, O., Ovadia, M., & Michaelson, D. M. (2024) · Journal of Alzheimer s Disease · doi:10.3233/jad-230514 · Cited by 8
“This differentiation is known to be important [69, 70], and differences in the effects of neuronal ApoE and astrocytic ApoE on various systems have been thoroughly studied [68–71].”
BackgroundWhat's been hidden in hidden hearing loss.
Bharadwaj, H. M., & Shinn-Cunningham, B. (2021) · Neuron · doi:10.1016/j.neuron.2021.02.025 · Cited by 6
Sun, J. K., Peng, A. Z., Hart, R. P., Herrup, K., Wu, D., Wong, G. C., & Chow, H. (2025) · Nature Communications · doi:10.1038/s41467-025-66726-4 · Cited by 7
“We acknowledge the reviewer's concern regarding the use of the early-onset familial Alzheimer's disease mouse model (3xTg), which is indeed a significant limitation of our study.”
Emerging roles of astrocytes in hippocampal circuitry and behavior
Squires, A., & Park, J. (2025) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2025.1694643 · Cited by 5
Lipid droplets in astrocytes: Key organelles for CNS homeostasis and disease (Review)
Wang, Y., Wang, B., Hou, J., Huo, X., Liu, C., Guan, R., Chen, H., Zhou, Y., Zhang, J., Zhuang, C., et al. (2025) · International Journal of Molecular Medicine · doi:10.3892/ijmm.2025.5691 · Cited by 5
“Research has iden‑ tified key cholesterol transporters, including APOE (63) and members of the ATP‑binding cassette transporter family, such as ATP‑binding cassette subfamily A member 1 (ABcA1) (64) and ABcG4 (65).”
Self-citationInvestigating the shared genetic architecture between frailty and insomnia
Song, Z., Li, W., Han, Y., Xu, Y., & Wang, Y. (2024) · Frontiers in Aging Neuroscience · doi:10.3389/fnagi.2024.1358996 · Cited by 6
“Animal experiments demonstrated that increased H3K27ac enrichment in early gene promoters of neurons enhances memory capacity in mice, thereby influencing aging (Li et al., 2021).”
BackgroundLane, R. M., Darreh‐Shori, T., Junge, C., Li, D. X., Yang, Q., Edwards, A., Graham, D. L., Moore, K. M., & Mummery, C. J. (2024) · BMC Neurology · doi:10.1186/s12883-024-03611-5 · Cited by 5
“The decreased cholesterol delivery by ApoE4 to the long and extensively arborized axons of the metabolically taxed cholinergic neurons requires them to expend energy on cholesterol synthesis and to consume acetyl coenzyme A (acetyl-CoA) [53].”
BackgroundSelf-citationMechanistic insights on non-coding RNAs in learning and memory.
Li, D.-F., Zhang, J., & Liu, Q. (2023) · Science Bulletin · doi:10.1016/j.scib.2023.07.005 · Cited by 5
Self-citationNowacka, A., Śniegocki, M., & Ziółkowska, E. (2025) · Cells · doi:10.3390/cells14181479 · Cited by 5
“Beyond Alzheimer-related phenotypes, new work shows that astrocytes can adjust neuronal cholesterol content through ApoE-dependent programs that rewire neuronal physiology [89–92].”
Wang, R., Maloney, B., Beck, J. S., Counts, S., & Lahiri, D. K. (2025) · Alzheimer s & Dementia · doi:10.1002/alz.70399 · Cited by 3
Acylation of the Rat Brain Proteins is Affected by the Inhibition of Pyruvate Dehydrogenase in vivo
Aleshin, V. A., Sibiryakina, D. A., Kazantsev, A. V., Graf, A. V., & Bunik, V. I. (2023) · Biochemistry (Moscow) · doi:10.1134/s0006297923010091 · Cited by 4
“The studies of the brain protein acylation system indicate that memory formation and age- or disease-related memory impairment depend not only on the long-known histone acetylation [17, 49-51], but also on histone succinylation [12].”
BackgroundHMGCS2-dependent β-OHB/H3K9bhb ameliorates synaptic plasticity and cognition in Alzheimer’s disease
Yu, H.-T., Wang, F., Yuan, J.-Q., Chen, J., Zhang, K.-Y., Jia, D., Gong, J., Mao, Y.-M., Bi, S.-G., Zhang, Y.-Q., et al. (2026) · Experimental and Molecular Medicine · doi:10.1038/s12276-026-01664-9 · Cited by 3
“Recent studies have found that histone modi fi cation, including histone acetylation (H3K27, H3K9, H4K12) 39,40 , methylation (H3K9) 41 and lactylation (H4K12) 23 , plays an important role in AD-like neurodegeneration and cognitive impairment.”
Uemura, K., Hiro, S., Attachaipanich, S., Du, R., Yusof, N. I. S. M., Kinoshita, M., Hikosaka, M., & Ohtsuki, G. (2026) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2025.1669272 · Cited by 5
Yuan, F., Han, Z., Yang, S., Chen, J., Li, R., Zhang, Z., Song, J., Wang, D., & Ban, Y. (2026) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2026.1758041 · Cited by 5
“Fer-1 quelled angiotensin-II-provoked inflammatory cascades and stellate-cell ferroptosis by dampening ROS surge and repressing Nrf2 together with GPX expression (Li et al., 2021a).”
ApoE maintains neuronal integrity via microRNA and H3K27me3-mediated repression
Tan, J., Tan, Y.-Y., Ngian, Z., Chong, S. Y., Rao, V. K., Wang, J., Zeng, X., & Ong, C. (2024) · iScience · doi:10.1016/j.isci.2024.109231 · Cited by 5
Metadata
- Authors
- Li, X., Zhang, J., Li, D., He, C., He, K., Xue, T., Wan, L., Zhang, C., & Liu, Q.
- Affiliations
- University of Science and Technology of China (CN)
- University of Pennsylvania (US)
- Harvard University (US)
- Corresponding author
- Zhang, Juan
- Liu, Qiang
- Venue
- Neuron
- Publisher
- Elsevier BV
- Published
- 2021-03
- Volume
- 109
- Issue
- 6
- Pages
- 957-970.e8
- ISSN
- 0896-6273 (ISSN-L)
- OpenAlex
- W3124009158
- Cited by
- 165
- References
- 0
- Citations by year
- 2026: 28 · 2025: 32 · 2024: 35 · 2023: 29 · 2022: 30 · 2021: 11
- FWCI
- 12.09
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- www.elsevier.com/tdm/userlicense/1.0/ (tdm)
- www.elsevier.com/legal/tdmrep-license (tdm)
- www.elsevier.com/open-access/userlicense/1.0/ (vor, 381 d)
- doi.org/10.15223/policy-017 (stm-asf)
- doi.org/10.15223/policy-037 (stm-asf)
- doi.org/10.15223/policy-012 (stm-asf)
- doi.org/10.15223/policy-029 (stm-asf)
- doi.org/10.15223/policy-004 (stm-asf)
- Locations
- Neuron (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Key Research and Development Program of China (2020YFA0509300)
- Fundamental Research Funds for the Central Universities
- Innovative Program of Development Foundation of Hefei Center for Physical Science and Technology (2018CXFX005)
- National Natural Science Foundation of China (31871082, 82071185, 91849101)
- Natural Science Foundation of Anhui Province (2008085QC117)
- Chinese Academy of Sciences (QYZDB-SSW-SMC035, XDB39000000)
- Topics
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Neuroscience and Neuropharmacology Research
- Life Sciences › Neuroscience › Neurology › Neuroinflammation and Neurodegeneration Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biochemistry › Cholesterol and Lipid Metabolism
- Keywords
- astrocytes, apolipoprotein E, microRNA transfer, histone acetylation, H3K27ac, memory consolidation, epigenetic regulation, acetyl-CoA, APOE ε4, APOE3, immediate early genes, astrocyte-neuron metabolic coupling
- MeSH terms
- Memory Consolidation, Acetylation, Animals, Apolipoproteins E, Astrocytes, Cell Line, Cholesterol, Gene Expression Regulation, Histones, Humans, Mice, Inbred C57BL, Neurons, Epigenesis, Genetic, Mice
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