The DOI matches its Crossref record; 23 of the 24 references it cites were found in a registry or an index.
Whole genome sequencing of emerging multidrug resistant Candida auris isolates in India demonstrates low genetic variation
Open accessAbstract
Candida auris is an emerging multidrug resistant yeast that causes nosocomial fungaemia and deep-seated infections. Notably, the emergence of this yeast is alarming as it exhibits resistance to azoles, amphotericin B and caspofungin, which may lead to clinical failure in patients. The multigene phylogeny and amplified fragment length polymorphism typing methods report the C. auris population as clonal. Here, using whole genome sequencing analysis, we decipher for the first time that C. auris strains from four Indian hospitals were highly related, suggesting clonal transmission. Further, all C. auris isolates originated from cases of fungaemia and were resistant to fluconazole (MIC >64 mg/L).
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Figures
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The source backs part of the claim, not all of it — or backs it for a different population, condition or comparison.
In the citing paper
“particularly for species related closely enough to share the same noncanonical genetic code40,41.”
From The emerging fungal pathogen Candida auris induces IFNγ to colonize mammalian hair follicles (2025) · cites this paper as [41]
Experimental — accuracy not yet measuredIn the citing paper
“Further, the identification of many putative transporter genes in the C. auris genome suggests that drug efflux may also be an important determinant of azole resistance (16–18).”
From Genetic Analysis of Candida auris Implicates Hsp90 in Morphogenesis and Azole Tolerance and Cdr1 in Azole Resistance (2019) · cites this paper as [17]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
McKenna, A., Hanna, M., Banks, E., Sivachenko, A., Cibulskis, K., Kernytsky, A., Garimella, K., Altshuler, D., Gabriel, S., Daly, M., et al. (2010) · Genome Research · doi:10.1101/gr.107524.110 · Cited by 27,895
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
Lowe, T. M., & Eddy, S. R. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.5.955 · Cited by 11,200
Velvet: Algorithms for de novo short read assembly using de Bruijn graphsPreprint
Zerbino, D. R., & Birney, E. (2008) · Genome Research · doi:10.1101/gr.074492.107 · Cited by 9,587
Application of Phylogenetic Networks in Evolutionary Studies
Huson, D. H., & Bryant, D. (2005) · Molecular Biology and Evolution · doi:10.1093/molbev/msj030 · Cited by 8,895
Shifting the genomic gold standard for the prokaryotic species definition
Richter, M., & Rossello-Mora, R. A. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0906412106 · Cited by 6,343
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
Lagesen, K., Hallin, P., Rødland, E., Stærfeldt, H., Rognes, T., & Ussery, D. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm160 · Cited by 5,965
The COG database: a tool for genome-scale analysis of protein functions and evolution
Tatusov, R. L. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.33 · Cited by 4,480
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
Darling, A. E., Mau, B., & Perna, N. T. (2010) · PLoS ONE · doi:10.1371/journal.pone.0011147 · Cited by 3,848
Scaffolding pre-assembled contigs using SSPACE.
Boetzer, M., Henkel, C. V., Jansen, H. J., Butler, D., & Pirovano, W. (2011) · Bioinformatics · doi:10.1093/bioinformatics/btq683 · Cited by 2,337
Satoh, K., Makimura, K., Hasumi, Y., Nishiyama, Y., Uchida, K., & Yamaguchi, H. (2009) · Microbiology and Immunology · doi:10.1111/j.1348-0421.2008.00083.x · Cited by 1,381
Cited by
Sorted by citations
Lockhart, S. R., Etienne, K. A., Vallabhaneni, S., Farooqi, J., Chowdhary, A., Govender, N. P., Colombo, A. L., Calvo, B., Cuomo, C. A., Desjardins, C. A., et al. (2017) · Clinical Infectious Diseases · doi:10.1093/cid/ciw691 · Cited by 1,662
Self-citationFirst hospital outbreak of the globally emerging Candida auris in a European hospital
Schelenz, S., Hagen, F., Rhodes, J. L., Abdolrasouli, A., Chowdhary, A., Hall, A., Ryan, L., Shackleton, J., Trimlett, R., Meis, J. F., et al. (2016) · Antimicrobial Resistance & Infection Control · doi:10.1186/s13756-016-0132-5 · Cited by 768
Self-citationChowdhary, A., Sharma, C., & Meis, J. F. (2017) · PLOS Pathogens · doi:10.1371/journal.ppat.1006290 · Cited by 750
Self-citationMultidrug-Resistant Candida: Epidemiology, Molecular Mechanisms, and Treatment
Arendrup, M. C., & Patterson, T. F. (2017) · The Journal of Infectious Diseases · doi:10.1093/infdis/jix131 · Cited by 707
Candida auris: a Review of the Literature
Jeffery-Smith, A., Taori, S. K., Schelenz, S., Jeffery, K. J., Johnson, E. M., Borman, A. M., Candida auris Incident Management Team, Manuel, R. J., & Brown, C. S. (2017) · Clinical Microbiology Reviews · doi:10.1128/cmr.00029-17 · Cited by 624
Chowdhary, A., Prakash, A., Sharma, C., Kordalewska, M., Kumar, A., Sarma, S., Tarai, B., Singh, A., Upadhyaya, G., Upadhyay, S., et al. (2018) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dkx480 · Cited by 577
Self-citationAntifungal resistance: current trends and future strategies to combat
Wiederhold, N. P. (2017) · Infection and Drug Resistance · doi:10.2147/idr.s124918 · Cited by 492
Muñoz, J. F., Gade, L., Chow, N. A., Loparev, V. N., Juieng, P., Berkow, E. L., Farrer, R. A., Litvintseva, A. P., & Cuomo, C. A. (2018) · Nature Communications · doi:10.1038/s41467-018-07779-6 · Cited by 458
Chow, N. A., Muñoz, J. F., Gade, L., Berkow, E., Li, X., Welsh, R. M., Forsberg, K., Lockhart, S. R., Adam, R., Alanio, A., et al. (2020) · doi:10.1101/2020.01.06.896548 · Cited by 463
Calvo, B., Melo, A. S. D. A., Mena, A. J. P., Hernandez, M., Francisco, E. C., Hagen, F., Meis, J. F. G. M., & Colombo, A. L. (2016) · Journal of Infection · doi:10.1016/j.jinf.2016.07.008 · Cited by 448
Self-citationCandida auris : The recent emergence of a multidrug-resistant fungal pathogen
Forsberg, K., Woodworth, K., Walters, M., Berkow, E. L., Jackson, B., Chiller, T., & Vallabhaneni, S. (2019) · Medical Mycology · doi:10.1093/mmy/myy054 · Cited by 421
Candida auris: an Emerging Fungal Pathogen
Spivak, E. S., & Hanson, K. E. (2018) · Journal of Clinical Microbiology · doi:10.1128/jcm.01588-17 · Cited by 393
Epidemiology, clinical characteristics, resistance, and treatment of infections by Candida auris
Cortegiani, A., Misseri, G., Fasciana, T., Giammanco, A., Giarratano, A., & Chowdhary, A. (2018) · Journal of Intensive Care · doi:10.1186/s40560-018-0342-4 · Cited by 345
Self-citationSekyere, J. O. (2018) · MicrobiologyOpen · doi:10.1002/mbo3.578 · Cited by 317
Drug-Resistant Fungi: An Emerging Challenge Threatening Our Limited Antifungal Armamentarium
Arastehfar, A. A., Gabaldón, T., Garcia‐Rubio, R., Jenks, J. D., Hoenigl, M., Salzer, H. J. F., İlkit, M., Lass‐Flörl, C., & Perlin, D. S. (2020) · Antibiotics · doi:10.3390/antibiotics9120877 · Cited by 302
Ahmad, S., & Alfouzan, W. (2021) · Microorganisms · doi:10.3390/microorganisms9040807 · Cited by 269
Understanding Echinocandin Resistance in the Emerging Pathogen Candida auris
Kordalewska, M., Lee, A., Park, S., Berrio, I., Chowdhary, A., Zhao, Y., & Perlin, D. S. (2018) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00238-18 · Cited by 247
Self-citationGenomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris
Rhodes, J., Abdolrasouli, A., Farrer, R. A., Cuomo, C. A., Aanensen, D. M., Armstrong-James, D., Fisher, M. C., & Schelenz, S. (2018) · Emerging Microbes & Infections · doi:10.1038/s41426-018-0045-x · Cited by 246
Environmental Isolation of Candida auris from the Coastal Wetlands of Andaman Islands, India
Arora, P., Singh, P., Wang, Y., Yadav, A., Pawar, K., Singh, A., Padmavati, G., Xu, J., & Chowdhary, A. (2021) · mBio · doi:10.1128/mbio.03181-20 · Cited by 223
Self-citationReview on Antifungal Resistance Mechanisms in the Emerging Pathogen Candida auris
Chaabane, F., Graf, A., Jequier, L., & Coste, A. T. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.02788 · Cited by 223
Biswal, M., Rudramurthy, S. M., Jain, N., Shankarnarayan, S. A., Sharma, D., Jain, K., Yaddanapudi, L. N., & Chakrabarti, A. (2017) · Journal of Hospital Infection · doi:10.1016/j.jhin.2017.09.009 · Cited by 234
Multidrug-resistant Candida auris: ‘New kid on the block’ in hospital-associated infections?
Chowdhary, A., Voss, A., & Meis, J. F. (2016) · Journal of Hospital Infection · doi:10.1016/j.jhin.2016.08.004 · Cited by 214
Self-citationCandida auris—the growing menace to global health
Lone, S. A., & Ahmad, A. (2019) · Mycoses · doi:10.1111/myc.12904 · Cited by 216
Candida auris and multidrug resistance: Defining the new normal
Lockhart, S. R. (2019) · Fungal Genetics and Biology · doi:10.1016/j.fgb.2019.103243 · Cited by 205
The fungal cell wall as a target for the development of new antifungal therapies
Cortés, J. C. G., Curto, M.-Á., Carvalho, V. S. D., Pérez, P., & Ribas, J. C. (2019) · Biotechnology Advances · doi:10.1016/j.biotechadv.2019.02.008 · Cited by 178
Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota
Shen, X., Steenwyk, J. L., LaBella, A. L., Opulente, D. A., Zhou, X., Kominek, J., Li, Y., Groenewald, M., Hittinger, C. T., & Rokas, A. (2020) · Science Advances · doi:10.1126/sciadv.abd0079 · Cited by 157
Ademe, M. (2020) · doi:10.2147/idr.s249864 · Cited by 182
The NDV-3A vaccine protects mice from multidrug resistant Candida auris infection
Singh, S., Uppuluri, P., Mamouei, Z., Alqarihi, A., Elhassan, H., French, S., Lockhart, S. R., Chiller, T., Edwards, J. E., & Ibrahim, A. S. (2019) · PLOS Pathogens · doi:10.1371/journal.ppat.1007460 · Cited by 162
The antifungal arsenal: alternative drugs and future targets
Wiederhold, N. P. (2018) · International Journal of Antimicrobial Agents · doi:10.1016/j.ijantimicag.2017.09.002 · Cited by 149
Synthetic macromolecules as therapeutics that overcome resistance in cancer and microbial infection
Tan, J., Tay, J., Hedrick, J. L., & Yang, Y. Y. (2020) · Biomaterials · doi:10.1016/j.biomaterials.2020.120078 · Cited by 143
First Candida auris Outbreak during a COVID-19 Pandemic in a Tertiary-Care Center in Lebanon
Allaw, F., Zahreddine, N. K., Ibrahim, A., Tannous, J., Taleb, H., Bizri, A. R., Dbaibo, G. S., & Kanj, S. S. (2021) · Pathogens · doi:10.3390/pathogens10020157 · Cited by 147
Sabino, R., Veríssimo, C., Pereira, Á. A., & Antunes, F. (2020) · Microorganisms · doi:10.3390/microorganisms8020181 · Cited by 133
Navarro-Arias, M. J., Hernández-Chávez, M. J., García-Carnero, L. C., Amezcua-Hernández, D. G., Lozoya‐Pérez, N. E., Estrada-Mata, E., Martínez-Duncker, I., Franco, B., & Mora-Montes, H. M. (2019) · Infection and Drug Resistance · doi:10.2147/idr.s197531 · Cited by 137
Kim, S. H., Iyer, K. R., Pardeshi, L., Muñoz, J. F., Robbins, N., Cuomo, C. A., Wong, K. H., & Cowen, L. E. (2019) · mBio · doi:10.1128/mbio.02529-18 · Cited by 136
Isolates of the emerging pathogen Candida auris present in the UK have several geographic origins
Borman, A. M., Székely, A., & Johnson, E. M. (2016) · Medical Mycology · doi:10.1093/mmy/myw147 · Cited by 132
Use of RNA-Protein Complexes for Genome Editing in Non- albicans Candida Species
Grahl, N., Demers, E. G., Crocker, A. W., & Hogan, D. A. (2017) · mSphere · doi:10.1128/msphere.00218-17 · Cited by 130
Lionakis, M. S., & Chowdhary, A. (2024) · New England Journal of Medicine · doi:10.1056/nejmra2402635 · Cited by 130
Self-citationEmergence ofCandida auris: An International Call to Arms
Clancy, C. J., & Nguyen, M. H. (2016) · Clinical Infectious Diseases · doi:10.1093/cid/ciw696 · Cited by 135
Identification of Drug Resistant Candida auris
Kordalewska, M., & Perlin, D. S. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.01918 · Cited by 136
Candida auris: What Have We Learned About Its Mechanisms of Pathogenicity?
Rossato, L., & Colombo, A. L. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.03081 · Cited by 121
Biagi, M. J., Wiederhold, N. P., Gibas, C. F. C., Wickes, B. L., Lozano, V., Bleasdale, S. C., & Danziger, L. H. (2019) · Open Forum Infectious Diseases · doi:10.1093/ofid/ofz262 · Cited by 119
Hog1 regulates stress tolerance and virulence in the emerging fungal pathogen Candida auris
Day, A. M., McNiff, M. M., da Silva Dantas, A., Gow, N. A. R., & Quinn, J. (2018) · mSphere · doi:10.1128/msphere.00506-18 · Cited by 116
Yadav, A., Singh, A. K., Wang, Y., van Haren, M. H. I., Singh, A. K., de Groot, T., Meis, J. F. G. M., Xu, J., & Chowdhary, A. (2021) · Journal of Fungi · doi:10.3390/jof7020081 · Cited by 112
Self-citationGenomics for Emerging Pathogen Identification and Monitoring: Prospects and Obstacles
Vashisht, V., Vashisht, A., Mondal, A. K., Farmaha, J. K., Alptekin, A., Singh, H., Ahluwalia, P. K., Srinivas, A., & Kolhe, R. B. (2023) · BioMedInformatics · doi:10.3390/biomedinformatics3040069 · Cited by 115
Shastri, P. S., Shankarnarayan, S. A., Oberoi, J., Rudramurthy, S. M., Wattal, C., & Chakrabarti, A. (2020) · Journal of Critical Care · doi:10.1016/j.jcrc.2020.01.004 · Cited by 103
Kenters, N., Kiernan, M., Chowdhary, A., Denning, D. W., Pemán, J., Saris, K., Schelenz, S., Tartari, E., Widmer, A., Meis, J. F., et al. (2019) · International Journal of Antimicrobial Agents · doi:10.1016/j.ijantimicag.2019.08.013 · Cited by 102
Self-citationde Jong, A. W., & Hagen, F. (2019) · Mycopathologia · doi:10.1007/s11046-019-00351-w · Cited by 98
The Candida auris Alert: Facts and Perspectives
Lamoth, F., & Kontoyiannis, D. P. (2017) · The Journal of Infectious Diseases · doi:10.1093/infdis/jix597 · Cited by 100
Candida auris: An emerging drug resistant yeast – A mini-review
Bidaud, A.-L., Chowdhary, A., & Dannaoui, É. (2018) · Journal de Mycologie Médicale · doi:10.1016/j.mycmed.2018.06.007 · Cited by 95
Self-citationAntifungal Resistance in Candida auris: Molecular Determinants
Frías-De-León, M. G., Hernández-Castro, R., Vite-Garín, T., Arenas, R., Bonifaz, A., Castañón-Olivares, L., Acosta-Altamirano, G., & Martínez-Herrera, E. (2020) · Antibiotics · doi:10.3390/antibiotics9090568 · Cited by 93
Pharmacodynamic Optimization for Treatment of Invasive Candida auris Infection
Lepak, A. J., Zhao, M., Berkow, E. L., Lockhart, S. R., & Andes, D. R. (2017) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00791-17 · Cited by 95
Eldesouky, H. E., Li, X., Abutaleb, N. S., Mohammad, H., & Seleem, M. N. (2018) · International Journal of Antimicrobial Agents · doi:10.1016/j.ijantimicag.2018.08.016 · Cited by 90
Wall, G., Chaturvedi, A. K., Wormley, F. L., Wiederhold, N. P., Patterson, H. P., Patterson, T. F., & Lopez-Ribot, J. L. (2018) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.01084-18 · Cited by 90
What do we know about the biology of the emerging fungal pathogen of humans Candida auris?
Ruiz, G. B., & Lorenz, A. (2020) · Microbiological Research · doi:10.1016/j.micres.2020.126621 · Cited by 85
Drug Resistance and Novel Therapeutic Approaches in Invasive Candidiasis
Murphy, S. E., & Bicanic, T. A. (2021) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2021.759408 · Cited by 86
Wiederhold, N. P., Lockhart, S. R., Najvar, L. K., Berkow, E. L., Jaramillo, R., Olivo, M., Garvey, E. P., Yates, C. M., Schotzinger, R. J., Catano, G., et al. (2018) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.02233-18 · Cited by 82
In Vitro Antifungal Resistance of Candida auris Isolates from Bloodstream Infections, South Africa
Maphanga, T. G., Naicker, S. D., Kwenda, S., Muñoz, J. F., van Schalkwyk, E., Wadula, J., Nana, T., Ismail, A., Coetzee, J., Govind, C., et al. (2021) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00517-21 · Cited by 78
Candida auris: A Quick Review on Identification, Current Treatments, and Challenges
Černáková, L., Roudbary, M., Brás, S., Tafaj, S., & Rodrigues, C. F. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22094470 · Cited by 85
Molecular Epidemiology of Candida Auris Outbreak in a Major Secondary-Care Hospital in Kuwait
Alfouzan, W. A., Ahmad, S., Dhar, R., Asadzadeh, M., Merdasi, N. A., Abdo, N. M., Joseph, L., de Groot, T., Alali, W. Q., Khan, Z., et al. (2020) · Journal of Fungi · doi:10.3390/jof6040307 · Cited by 77
Self-citationSaris, K., Meis, J. F. G. M., & Voß, A. (2018) · Current Opinion in Infectious Diseases · doi:10.1097/qco.0000000000000469 · Cited by 76
Self-citationSekyere, J. O., Maningi, N. E., & Fourie, P. B. (2020) · Annals of the New York Academy of Sciences · doi:10.1111/nyas.14300 · Cited by 74
Wiederhold, N. P., Najvar, L. K., Shaw, K. J., Jaramillo, R., Patterson, H., Olivo, M., Catano, G., & Patterson, T. F. (2019) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.01120-19 · Cited by 71
Candida auris: An Overview of How to Screen, Detect, Test and Control This Emerging Pathogen
Fasciana, T., Cortegiani, A., Ippolito, M., Giarratano, A., Diquattro, O., Lipari, D., Graceffa, D., & Giammanco, A. (2020) · Antibiotics · doi:10.3390/antibiotics9110778 · Cited by 76
Pathirana, R. U., Friedman, J., Norris, H. L., Salvatori, O., McCall, A. D., Kay, J. G., & Edgerton, M. (2017) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.01872-17 · Cited by 72
de Oliveira, H. C., Monteiro, M. C., Rossi, S. A., Pemán, J., Gaitán, A. C. R., Mendes‐Giannini, M. J. S., Mellado, E., & Zaragoza, Ó. (2019) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2019.00083 · Cited by 68
Candida auris: a comparison between planktonic and biofilm susceptibility to antifungal drugs
Romera, D., Aguilera-Correa, J. J., Gadea, I., Viñuela-Sandoval, L., García‐Rodríguez, J., & Esteban, J. (2019) · Journal of Medical Microbiology · doi:10.1099/jmm.0.001036 · Cited by 69
A One Health approach to overcoming fungal disease and antifungal resistance
Woods, M., McAlister, J. A., & Geddes‐McAlister, J. (2023) · WIREs Mechanisms of Disease · doi:10.1002/wsbm.1610 · Cited by 72
Hou, X., Lee, A., Jiménez-Ortigosa, C., Kordalewska, M., Perlin, D. S., & Zhao, Y. (2019) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.01811-18 · Cited by 66
Allert, S., Schulz, D., Kämmer, P., Großmann, P., Wolf, T., Schäuble, S., Panagiotou, G., Brunke, S., & Hube, B. (2022) · Virulence · doi:10.1080/21505594.2022.2026037 · Cited by 66
Multidrug-resistant Candida auris : an epidemiological review
Chakrabarti, A., & Singh, S. (2020) · Expert Review of Anti-infective Therapy · doi:10.1080/14787210.2020.1750368 · Cited by 68
Rapid and extensive karyotype diversification in haploid clinical Candida auris isolates
Bravo Ruiz, G., Ross, Z. K., Holmes, E., Schelenz, S., Gow, N. A. R., & Lorenz, A. (2019) · Current Genetics · doi:10.1007/s00294-019-00976-w · Cited by 60
Gómez-Gaviria, M., Martínez-Álvarez, J. A., Chávez-Santiago, J. O., & Mora-Montes, H. M. (2023) · Infection and Drug Resistance · doi:10.2147/idr.s402754 · Cited by 64
Emergence of the novel sixth Candida auris Clade VI in Bangladesh
Khan, T., Faysal, N. I., Hossain, M. M., Mah‐E‐Muneer, S., Haider, A., Moon, S. B., Sen, D., Ahmed, D., Parnell, L. A., Jubair, M., et al. (2024) · Microbiology Spectrum · doi:10.1128/spectrum.03540-23 · Cited by 65
Bougnoux, M., Brun, S., & Zahar, J. (2018) · Antimicrobial Resistance and Infection Control · doi:10.1186/s13756-018-0338-9 · Cited by 59
Ong, C. W., Chen, S. C. ‐., Clark, J. E., Halliday, C. L., Kidd, S. E., Marriott, D. J. E., Marshall, C. L., Morris, A. J., Morrissey, C. O., Roy, R., et al. (2019) · Internal Medicine Journal · doi:10.1111/imj.14612 · Cited by 61
Eldesouky, H. E., Salama, E. A., Lanman, N. A., Hazbun, T. R., & Seleem, M. N. (2020) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00684-20 · Cited by 56
Abid, F. B., Salah, H., Sundararaju, S., Dalil, L., Abdelwahab, A. H., Salameh, S., Ibrahim, E. B., Almaslmani, M. A., Tang, P., Pérez‐López, A., et al. (2023) · Clinical Microbiology and Infection · doi:10.1016/j.cmi.2023.04.025 · Cited by 57
Arendrup, M. C., Chowdhary, A., Astvad, K. M. T., & Jørgensen, K. M. (2018) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.01225-18 · Cited by 54
Self-citationThe emerging pathogen Candida auris: A focus on the Middle-Eastern countries
Alfouzan, W. A., Dhar, R., Albarrag, A., & Al-Abdely, H. M. (2019) · Journal of Infection and Public Health · doi:10.1016/j.jiph.2019.03.009 · Cited by 54
Wiederhold, N. P., Najvar, L. K., Olivo, M., Morris, K. N., Patterson, H. P., Catano, G., & Patterson, T. F. (2021) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.02694-20 · Cited by 52
Billamboz, M., Fatima, Z., Hameed, S., & Jawhara, S. (2021) · Microorganisms · doi:10.3390/microorganisms9030634 · Cited by 54
The Novel Arylamidine T-2307 Demonstrates In Vitro and In Vivo Activity against Candida auris
Wiederhold, N. P., Najvar, L. K., Jaramillo, R., Olivo, M., Patterson, H., Connell, A., Fukuda, Y., Mitsuyama, J., Catano, G., & Patterson, T. F. (2020) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.02198-19 · Cited by 50
Prevalence and Therapeutic Challenges of Fungal Drug Resistance: Role for Plants in Drug Discovery
Marquez, L., & Quave, C. L. (2020) · Antibiotics · doi:10.3390/antibiotics9040150 · Cited by 55
Gaitán, A. C. R., Cantón, E., Fernández-Rivero, M. E., Ramírez, P., & Pemán, J. (2019) · International Journal of Antimicrobial Agents · doi:10.1016/j.ijantimicag.2019.02.005 · Cited by 49
Rare fungal infectious agents: a lurking enemy
Skiada, A., Pavleas, I., & Drogari‐Apiranthitou, M. (2017) · F1000Research · doi:10.12688/f1000research.11124.1 · Cited by 48
In vitro antifungal activity of a novel topical triazole PC945 against emerging yeast Candida auris
Rudramurthy, S. M., Colley, T., Abdolrasouli, A., Ashman, J., Dhaliwal, M., Kaur, H., Armstrong-James, D., Strong, P., Rapeport, G., Schelenz, S., et al. (2019) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dkz280 · Cited by 44
da Silva, K. J. G., Lucini, F., Santos, R., Santos, D. A., Meis, J. F. G. M., Melhem, M. D. S. C., Peres, N. T. A., Bastos, R. W., & Rossato, L. L. (2025) · Clinical Microbiology and Infection · doi:10.1016/j.cmi.2025.04.003 · Cited by 49
Self-citationEmerging and future strategies in the management of recalcitrant Candida auris
Bandara, N., & Samaranayake, L. P. (2022) · Medical Mycology · doi:10.1093/mmy/myac008 · Cited by 42
Matsumura, Y., Yamamoto, M., Gomi, R., Tsuchido, Y., Shinohara, K., Noguchi, T., & Nagao, M. (2025) · Clinical Microbiology Reviews · doi:10.1128/cmr.00140-22 · Cited by 47
A Selective Medium for Isolation and Detection of Candida auris, an Emerging Pathogen
Das, S. K., Singh, S., Tawde, Y., Chakrabarti, A., Rudramurthy, S. M., Kaur, H., Shankarnarayan, S. A., & Ghosh, A. K. (2020) · Journal of Clinical Microbiology · doi:10.1128/jcm.00326-20 · Cited by 43
Lara‐Aguilar, V., Rueda, C., García-Barbazán, I., Varona, S., Monzón, S., Jiménez, P., Cuesta, I., Zaballos, Á., & Zaragoza, Ó. (2021) · Virulence · doi:10.1080/21505594.2021.1927609 · Cited by 46
Outbreaks of Fungal Infections in Hospitals: Epidemiology, Detection, and Management
Douglas, A. P., Stewart, A. G., Halliday, C. L., & Chen, S. C. ‐. (2023) · Journal of Fungi · doi:10.3390/jof9111059 · Cited by 50
Molecular Diagnostics for Invasive Fungal Diseases: Current and Future Approaches
Pham, D., Sivalingam, V., Tang, H. M., Montgomery, J. M., Chen, S. C. ‐., & Halliday, C. L. (2024) · Journal of Fungi · doi:10.3390/jof10070447 · Cited by 47
Yadav, A., Wang, Y., Jain, K., Panwar, V. A. R., Kaur, H., Kasana, V., Xu, J., & Chowdhary, A. (2023) · Journal of Fungi · doi:10.3390/jof9070720 · Cited by 38
Self-citationCastanheira, M., Deshpande, L. M., Rhomberg, P. R., & Carvalhaes, C. G. (2024) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00570-24 · Cited by 40
Application of Machine Learning Classifier to Candida auris Drug Resistance Analysis
Li, D., Wang, Y., Hu, W., Chen, F., Zhao, J., Chen, X., & Li, H. (2021) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2021.742062 · Cited by 40
The Epidemiology and Prevention of Candida auris
Snyder, G. M., & Wright, S. B. (2019) · Current Infectious Disease Reports · doi:10.1007/s11908-019-0675-8 · Cited by 34
Salah, H., Sundararaju, S., Dalil, L., Salameh, S., Al-Wali, W., Tang, P., Abid, F. B., & Tsui, C. K. M. (2021) · Journal of Fungi · doi:10.3390/jof7030240 · Cited by 35
Martı́nez-Murcia, A., Navarro, A., Bru, G., Chowdhary, A., Hagen, F., & Meis, J. F. G. M. (2018) · Mycoses · doi:10.1111/myc.12834 · Cited by 34
Self-citationTranscriptome Signatures Predict Phenotypic Variations of Candida auris
Jenull, S., Tscherner, M., Kashko, N., Shivarathri, R., Stoiber, A., Chauhan, M., Petryshyn, A., Chauhan, N., & Kuchler, K. (2021) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2021.662563 · Cited by 32
Metadata
- Authors
- Sharma, C., Kumar, N., Pandey, R., Meis, J. F., & Chowdhary, A.
- Affiliations
- University of Delhi (IN)
- Wellcome Sanger Institute (GB)
- Institute of Genomics and Integrative Biology (IN)
- Radboud University Nijmegen (NL)
- Corresponding author
- Chowdhary, A.
- Venue
- New Microbes and New Infections
- Publisher
- Elsevier BV
- Published
- 2016-09
- Volume
- 13
- Pages
- 77-82
- ISSN
- 2052-2975 (ISSN-L)
- PMC
- PMC5006800
- OpenAlex
- W2473558636
- Cited by
- 202
- References
- 24
- Citations by year
- 2026: 7 · 2025: 20 · 2024: 18 · 2023: 18 · 2022: 15 · 2021: 22 · 2020: 23 · 2019: 31 · 2018: 21 · 2017: 21 · 2016: 6
- FWCI
- 24.30
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- New Microbes and New Infections (publishedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Radboud Repository (Radboud University) (submittedVersion)
- Radboud Repository (Radboud University) (submittedVersion, other-oa)
- Funders
- Astellas
- Basilea
- Merck
- United Medical
- Gilead
- Topics
- Health Sciences › Medicine › Infectious Diseases › Antifungal resistance and susceptibility
- Life Sciences › Immunology and Microbiology › Microbiology › Yeasts and Rust Fungi Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fungal and yeast genetics research
- Keywords
- Candida auris, multidrug resistance, clonal transmission, genetic relatedness, fluconazole resistance, azole resistance, amphotericin B resistance, caspofungin resistance, emerging fungal pathogens, Indian hospitals
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
