CoChat
Sign Up
Cited by 537

MicroRNA-mediated switching of chromatin-remodelling complexes in neural development

Yoo, Andrew S., Staahl, Brett T., Chen, Lei, Crabtree, Gerald R.·2009·Nature
DOI 10.1038/nature08139PMC PMC2921580
Open this paper in CoChat — free account

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1038/nature08139

Cites

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Suppressing miR-9-3p activity in postmitotic neurons induces BAF53a expression.

    “Furthermore, suppressing miR-9-3p activity in postmitotic neurons induced the expression of BAF53a, which is an npBAF (Yoo et al., 2009;Yoo et al., 2011)”

    From The Brain-Enriched MicroRNA miR-9-3p Regulates Synaptic Plasticity and Memory (2016) · cites this paper as Yoo et al., 2009

  • miR-9-3p controls the transition from neural progenitor to postmitotic neurons by switching chromatin remodeling complexes from npBAF to neuron-specific BAF.

    “miR-9-3p was shown to control the transition from neural progenitor to postmitotic neurons by switching the chromatin remodeling complexes from neural-progenitor-specific BAF (npBAF) to neuron-specific BAF.”

    From The Brain-Enriched MicroRNA miR-9-3p Regulates Synaptic Plasticity and Memory (2016) · cites this paper as Yoo et al., 2009

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

No references could be resolved yet.

Research works printed but not linked: 32

  1. [1]Noctor SC Martinez-Cerdeno V Ivic L Kriegstein AR Cortical neurons arise in symmetric and asymmetric division zones and migrate through specific phases Nature Neurosci 7 136 144 2004 14703572
  2. [2]Temple S The development of neural stem cells Nature 414 112 117 2001 11689956
  3. [3]Lessard J An essential switch in subunit composition of a chromatin remodeling complex during neural development Neuron 55 201 215 2007 17640523 PMC2674110
  4. [4]Wu J Regulation of dendritic development by neuron-specific chromatin remodeling complexes Neuron 56 94 108 2007 17920018
  5. [5]Parrish JZ Kim MD Jan LY Jan YN Genome-wide analyses identify transcription factors required for proper morphogenesis of Drosophila sensory neuron dendrites Genes Dev 20 820 835 2006 16547170 PMC1472285
  6. [6]Conaco C Otto S Han JJ Mandel G Reciprocal actions of REST and a microRNA promote neuronal identity Proc Natl Acad Sci USA 103 2422 2427 2006 16461918 PMC1413753
  7. [7]Laurent BC Treich I Carlson M The yeast SNF2/SWI2 protein has DNA-stimulated ATPase activity required for transcriptional activation Genes Dev 7 583 591 1993 8458575
  8. [8]Peterson CL Herskowitz I Characterization of the yeast SWI1, SWI2, and SWI3 genes, which encode a global activator of transcription Cell 68 573 583 1992 1339306
  9. [9]Khavari PA Peterson CL Tamkun JW Mendel DB Crabtree GR BRG1 contains a conserved domain of the SWI2/SNF2 family necessary for normal mitotic growth and transcription Nature 366 170 174 1993 8232556
  10. [10]Lemon B Inouye C King DS Tjian R Selectivity of chromatin-remodelling cofactors for ligand-activated transcription Nature 414 924 928 2001 11780067
  11. [11]Wang W Diversity and specialization of mammalian SWI/SNF complexes Genes Dev 10 2117 2130 1996 8804307
  12. [12]Krek A Combinatorial microRNA target predictions Nature Genet 37 495 500 2005 15806104
  13. [13]Miranda KC A pattern-based method for the identification of microRNA binding sites and their corresponding heteroduplexes Cell 126 1203 1217 2006 16990141
  14. [14]Carthew RW Sontheimer EJ Origins and mechanisms of miRNAs and siRNAs Cell 136 642 655 2009 19239886 PMC2675692
  15. [15]Krichevsky AM Sonntag KC Isacson O Kosik KS Specific microRNAs modulate embryonic stem cell-derived neurogenesis Stem Cells 24 857 864 2006 16357340 PMC2605651
  16. [16]Lagos-Quintana M Identification of tissue-specific microRNAs from mouse Curr Biol 12 735 739 2002 12007417
  17. [17]Didiano D Hobert O Molecular architecture of a miRNA-regulated 3′ UTR RNA 14 1297 1317 2008 18463285 PMC2441980
  18. [18]Filipowicz W Bhattacharyya SN Sonenberg N Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nature Rev Genet 9 102 114 2008 18197166
  19. [19]Cao X Pfaff SL Gage FH A functional study of miR-124 in the developing neural tube Genes Dev 21 531 536 2007 17344415 PMC1820895
  20. [20]Makeyev EV Zhang J Carrasco MA Maniatis T The microRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing Mol Cell 27 435 448 2007 17679093 PMC3139456
  21. [21]Visvanathan J Lee S Lee B Lee JW Lee SK The microRNA miR-124 antagonizes the anti-neural REST/SCP1 pathway during embryonic CNS development Genes Dev 21 744 749 2007 17403776 PMC1838526
  22. [22]Flynt AS Lai EC Biological principles of microRNA-mediated regulation: shared themes amid diversity Nature Rev Genet 9 831 842 2008 18852696 PMC2729318
  23. [23]Lunyak VV Corepressor-dependent silencing of chromosomal regions encoding neuronal genes Science 298 1747 1752 2002 12399542
  24. [24]Ballas N Grunseich C Lu DD Speh JC Mandel G REST and its corepressors mediate plasticity of neuronal gene chromatin throughout neurogenesis Cell 121 645 657 2005 15907476
  25. [25]Chen ZF Paquette AJ Anderson DJ NRSF/REST is required in vivo for repression of multiple neuronal target genes during embryogenesis Nature Genet 20 136 142 1998 9771705
  26. [26]Chong JA REST: a mammalian silencer protein that restricts sodium channel gene expression to neurons Cell 80 949 957 1995 7697725
  27. [27]Schoenherr CJ Anderson DJ The neuron-restrictive silencer factor (NRSF): a coordinate repressor of multiple neuron-specific genes Science 267 1360 1363 1995 7871435
  28. [28]Kuwabara T Hsieh J Nakashima K Taira K Gage FH A small modulatory dsRNA specifies the fate of adult neural stem cells Cell 116 779 793 2004 15035981
  29. [29]Bultman S A Brg1 null mutation in the mouse reveals functional differences among mammalian SWI/SNF complexes Mol Cell 6 1287 1295 2000 11163203
  30. [30]Kim JK Srg3, a mouse homolog of yeast SWI3, is essential for early embryogenesis and involved in brain development Mol Cell Biol 21 7787 7795 2001 11604513 PMC99948
  31. [31]Warming S Costantino N Court DL Jenkins NA Copeland NG Simple and highly efficient BAC recombineering using galK selection Nucleic Acids Res 33 e36 2005 15731329 PMC549575
  32. [32]Graef IA L-type calcium channels and GSK-3 regulate the activity of NF-ATc4 in hippocampal neurons Nature 401 703 708 1999 10537109

Cited by

Sorted by citations

Authors
Yoo, A. S., Staahl, B. T., Chen, L., & Crabtree, G. R.
Venue
Nature
Publisher
Springer Science and Business Media LLC
Published
2009-06-28
Volume
460
Issue
7255
Pages
642-646
ISSN
  • 0028-0836
  • 1476-4687
DOI
10.1038/nature08139
PMC
PMC2921580
Cited by
537
References
0
Language
en
Licence

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review