BRCA1–BARD1 promotes RAD51-mediated homologous DNA pairing
Open accessAbstract
The tumour suppressor complex BRCA1-BARD1 functions in the repair of DNA double-stranded breaks by homologous recombination. During this process, BRCA1-BARD1 facilitates the nucleolytic resection of DNA ends to generate a single-stranded template for the recruitment of another tumour suppressor complex, BRCA2-PALB2, and the recombinase RAD51. Here, by examining purified wild-type and mutant BRCA1-BARD1, we show that both BRCA1 and BARD1 bind DNA and interact with RAD51, and that BRCA1-BARD1 enhances the recombinase activity of RAD51. Mechanistically, BRCA1-BARD1 promotes the assembly of the synaptic complex, an essential intermediate in RAD51-mediated DNA joint formation. We provide evidence that BRCA1 and BARD1 are indispensable for RAD51 stimulation. Notably, BRCA1-BARD1 mutants with weakened RAD51 interactions show compromised DNA joint formation and impaired mediation of homologous recombination and DNA repair in cells. Our results identify a late role of BRCA1-BARD1 in homologous recombination, an attribute of the tumour suppressor complex that could be targeted in cancer therapy.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
0 of 18 cited sources checked · 0 supported · 0 flagged
- Findingown data
BRCA1-BARD1 binds 4-5 RAD51 molecules.
“We also determined that 4–5 RAD51 molecules are bound by BRCA1-BARD1”
Quote in the paperSubstantial claim - Findingown data
Unlike BRCA2-DSS1, BRCA1-BARD1 fails to promote assembly of RAD51 presynaptic filaments on RPA-coated ssDNA.
“while, as reported previously36,38, the BRCA2-DSS1 complex promotes RAD51 presynaptic filament assembly on RPA-coated ssDNA, BRCA1-BARD1 does not possess such an attribute”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [36] Zhao, W. et al. Promotion of BRCA2-dependent homologous recombination by DSS1 via RPA targeting and DNA mimicry. Mol. Cell 59, 176–187 (2015) source
Not checked in the free run.
- cites [38] Jensen, R. B., Carreira, A. & Kowalczykowski, S. C. Purified human BRCA2 stimulates RAD51-mediated recombination. Nature 467, 678–683 (2010) source
Not checked in the free run.
- Findingown data
The RAD51 interaction domain in BRCA1-BARD1 was identified.
“Extended Data Fig. 6 Identification of the RAD51 interaction domain in BRCA1-BARD1”
Quote in the paperSubstantial claim- Rests on an assumption: The antibodies used in immunoblotting are specific for their intended targets.
- Findingown data
When both BARD1 and 53BP1 are absent, the AAE mutant complements the HR defect less well than wild-type BARD1.
“In cells lacking both BARD1 and 53BP1, BARD1AAEres was less capable than BARD1WTres in complementing the HR deficiency (Extended Data Fig. 8l, m).”
Quote in the paperSubstantial claim - Findingown data
BARD1 truncation mutants vary in their ability to interact with RAD51.
“Summary of the RAD51 interaction ability of BARD1 truncation mutants, based on the pulldown analyses in e (for BRCA1-BARD1, BRCA11-500-BARD1 and BRCA11-500-BARD11-261), f (for BRCA11-500-BARD1, BRCA11-500-BARD11-261 and BRCA11-500-BARD11-122), g (for BRCA11-500-BARD1Δ123-261, BRCA11-500-BARD1Δ123-162, BRCA11-500-BARD11-261 and BRCA11-500-BARD11-162) and h (for BARD1123-162).”
Quote in the paperNot a substantial claim- Rests on an assumption: The antibodies used in immunoblotting are specific for their intended targets.
- Findingown data
BRCA1-BARD1 lacks recombination mediator activity.
“Extended Data Fig. 4 Lack of recombination mediator activity in BRCA1-BARD1 and species-specific enhancement of RAD51 recombinase by BRCA1-BARD1”
Quote in the paperSubstantial claim - Findingown data
BRCA1-BARD1 stimulates synaptic complex formation.
“we found a stimulatory effect of BRCA1-BARD1 on synaptic complex formation”
Quote in the paperSubstantial claim - Findingown data
The complex competes with BRCA2-DSS1 for binding RAD51.
“we found that BRCA1-BARD1 can compete with BRCA2-DSS1 for RAD51 association”
Quote in the paperSubstantial claim - Findingown data
The AAE mutation does not change where BRCA1 and BARD1 localize in the nucleus.
“Cellular fractionation confirmed that the nuclear localization of BRCA1 and BARD1 is not affected by the BARD1AAEres mutation”
Quote in the paperNot a substantial claim - Findingown data
The AAE mutation reduces the DNA damage-induced binding to RAD51.
“the BARD1AAEres mutation impairs the DNA damage-induced association with RAD51”
Quote in the paperSubstantial claim - Findingown data
In DNA curtain experiments, BRCA1-BARD1 increases how often the RAD51 presynaptic filament engages DNA.
“the results showed an enhancement of DNA engagement by BRCA1-BARD1”
Quote in the paperSubstantial claim - Findingown data
BARD1 residues 123-162 are required for binding RAD51.
“the region between residues 123–162 of BARD1 was found to be indispensable for RAD51 interaction”
Quote in the paperSubstantial claim - Findingown data
When endogenous BARD1 is depleted, wild-type and AAE BARD1 support similar RAD51 focus formation, spontaneously and after γ-irradiation.
“In cells depleted of endogenous BARD1 and expressing BARD1WTres or BARD1AAEres, RAD51 focus formation occurred similarly, both spontaneously and after γ-irradiation”
Quote in the paperSubstantial claim - Findingown data
The complex leaves yRad51-containing presynaptic filaments unchanged in their dsDNA engagement.
“we also verified that BRCA1-BARD1 does not affect the ability of presynaptic filaments harboring yRad51 to engage dsDNA”
Quote in the paperNot a substantial claim - Findingown data
MMC treatment increases how much RAD51 co-immunoprecipitates with BARD1.
“the amount of RAD51 co-immunoprecipitating with BARD1WTres is enhanced by MMC treatment of cells”
Quote in the paperSubstantial claim - Findingown data
BARD1 siRNA reduces RAD51 focus formation less strongly.
“treatment with BARD1 siRNA impaired RAD51 focus formation to a lesser extent”
Quote in the paperNot a substantial claim - Findingown data
Removing BRCA1 residues 758-1064 eliminates the complex's ability to support RAD51-mediated DNA strand invasion.
“and that deletion of this domain abolishes the activity of BRCA1-BARD1 in RAD51-mediated DNA strand invasion (this study)”
Quote in the paperSubstantial claim - Findingown data
BRCA1-BARD1 enhances RAD51 recombinase in a species-specific manner.
“Extended Data Fig. 4 Lack of recombination mediator activity in BRCA1-BARD1 and species-specific enhancement of RAD51 recombinase by BRCA1-BARD1”
Quote in the paperSubstantial claim - Findingown data
Cells with the AAE mutant are more sensitive to MMC and Olaparib than those with wild-type BARD1.
“BARD1 deficient cells that harbored BARD1AAEres were markedly more sensitive to MMC and to the PARP inhibitor Olaparib than cells expressing BARD1WTres”
Quote in the paperSubstantial claim - Findingown data
More RAD51 co-precipitates with the BRCA1-BARD1 complex than with BRCA1 by itself.
“BRCA1-BARD1 could co-precipitate much more RAD51 than BRCA1 alone”
Quote in the paperSubstantial claim - Findingown data
On RPA-coated ssDNA, combining BRCA1-BARD1 and BRCA2-DSS1 gives stronger D-loop formation than either alone.
“with RPA-coated ssDNA, D-loop formation became more robust with the combination of BRCA1-BARD1 and BRCA2-DSS1 than either complex alone”
Quote in the paperNot a substantial claim - Findingown data
The complex fails to stimulate yRad51 activity.
“BRCA1-BARD1 did not enhance the activity of yRad51”
Quote in the paperNot a substantial claim - Interpretationown data
BARD1 binds DNA in a structure-specific way, preferring the D-loop and DNA bubble.
“Thus, BARD1 is a structure-specific DNA binding protein with the highest affinity for the D-loop and DNA bubble.”
Quote in the paperSubstantial claim - Interpretationown data
Nucleic acid does not mediate the contact between BRCA1-BARD1 and RAD51.
“indicating that the association is not bridged by nucleic acid”
Quote in the paperSubstantial claim - Premisecitation
The RAD51 interaction domain lies within BRCA1 residues 758-1064.
“We note that the region of BRCA1 (amino acid residues 758-1064) that harbors the RAD51 interaction domain17 is frequently mutated in cancer (cBioPortal for Cancer Genomic)44,45”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [17] Scully, R. et al. Association of BRCA1 with Rad51 in mitotic and meiotic cells. Cell 88, 265–275 (1997) source
Not checked in the free run.
- Premiseown data
The BRCA1-BARD1 complex acts in homologous recombination-mediated repair of DNA double-strand breaks.
“The tumor suppressor complex BRCA1-BARD1 functions in DNA double-strand break repair by homologous recombination.”
Quote in the paperSubstantial claim0 of 5 sources checked- cites [1] Narod, S. A. & Foulkes, W. D. BRCA1 and BRCA2: 1994 and beyond. Nat. Rev. Cancer 4, 665–676 (2004) source
Not checked in the free run.
- cites [3] Silver, D. P. & Livingston, D. M. Mechanisms of BRCA1 tumor suppression. Cancer Discov. 2, 679–684 (2012) source
Not checked in the free run.
- cites [17] Scully, R. et al. Association of BRCA1 with Rad51 in mitotic and meiotic cells. Cell 88, 265–275 (1997) source
Not checked in the free run.
- cites [18] Moynahan, M. E., Chiu, J. W., Koller, B. H. & Jasin, M. Brca1 controls homology-directed DNA repair. Mol. Cell 4, 511–518 (1999) source
Not checked in the free run.
- cites [19] Caestecker, K. W. & Van de Walle, G. R. The role of BRCA1 in DNA double-strand repair: past and present. Exp. Cell Res. 319, 575–587 (2013) source
Not checked in the free run.
- Interpretationown data
BRCA1 is required for BRCA1-BARD1 to act as a RAD51 co-factor.
“Thus, BRCA1 is also indispensable for the functional integrity of BRCA1-BARD1 as a co-factor of RAD51.”
Quote in the paperSubstantial claim - Interpretationown data
This function requires both BRCA1 and BARD1.
“Both BRCA1 and BARD1 are indispensable for this attribute.”
Quote in the paperSubstantial claim - Interpretationown data
RAD51-mediated DNA strand invasion requires the BRCA1-BARD1-RAD51 complex for enhancement.
“Together, these results provided evidence that the BRCA1-BARD1-RAD51 complex is indispensable for the enhancement of RAD51-mediated DNA strand invasion.”
Quote in the paperSubstantial claim - Interpretationown data
The study reveals a new function for BRCA1-BARD1: boosting DNA invasion during HR through direct RAD51 binding.
“Our study has revealed a novel role of BRCA1-BARD1 in the enhancement of DNA invasion in HR via a direct interaction with RAD51”
Quote in the paperSubstantial claim - Interpretationown data
The complex stimulates RAD51-catalyzed DNA joint formation.
“Taken together, the results revealed an unexpected role of BRCA1-BARD1 in promoting DNA joint formation that is catalyzed by RAD51”
Quote in the paperSubstantial claim - Interpretationown data
BARD1 harbors a major RAD51 interaction domain.
“This result, together with the Far Western data (Fig. 1e), indicated that BARD1 harbors a major RAD51 interaction domain”
Quote in the paperSubstantial claim - Premisecitation
Cancer samples often carry mutations in BRCA1 residues 758-1064.
“We note that the region of BRCA1 (amino acid residues 758-1064) that harbors the RAD51 interaction domain17 is frequently mutated in cancer (cBioPortal for Cancer Genomic)44,45”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [44] Cerami, E. et al. The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov. 2, 401–404 (2012) source
Not checked in the free run.
- cites [45] Gao, J. et al. Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal. Sci. Signal. 6, pl1 (2013) source
Not checked in the free run.
- May combine two claims. 30
- Classified as probably not a substantial claim. 10
- The quote only partly states this claim. 2
May combine two claims.
Findingown dataThe complex binds human RAD51, while showing little or no binding to yeast Rad51 or E. coli RecA.
“we found that BRCA1-BARD1 interacts with human RAD51 but has little or no affinity for yeast Rad51 (yRad51) (Fig. 1d) or E. coli RecA”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataBRCA1 and BARD1 each bind the D-loop, and BARD1 appears to bind it more strongly.
“we found that both BRCA1 and BARD1 bind the D-loop, with BARD1 showing an apparently higher affinity for the substrate”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataThe BRCA1-BARD1 complex binds DNA, preferring the D-loop and DNA bubble most, then the replication fork, dsDNA, and ssDNA.
“The results revealed that BRCA1-BARD1 has the highest affinity for the D-loop and DNA bubble, followed by the RF, dsDNA, and ssDNA”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataIn Far Western assays, BRCA1 and BARD1 each retained RAD51, and BARD1 gave the stronger signal.
“both BRCA1 and BARD1 retained RAD51 in the Far Western assay, with BARD1 showing a more robust signal”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataBenzonase and ethidium bromide do not disrupt assembly of the BRCA1-BARD1-RAD51 complex.
“formation of the BRCA1-BARD1-RAD51 complex was not affected by benzonase or ethidium bromide”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataWhen dsDNA is present, BRCA1-BARD1 cannot target RAD51 to ssDNA, whereas BRCA2-DSS1 can.
“unlike BRCA2-DSS137,38, BRCA1-BARD1 is devoid of the ability to target RAD51 to ssDNA when dsDNA is present”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [37] San Filippo, J. et al. Recombination mediator and Rad51 targeting activities of a human BRCA2 polypeptide. J. Biol. Chem. 281, 11649–11657 (2006) source
Not checked in the free run.
- cites [38] Jensen, R. B., Carreira, A. & Kowalczykowski, S. C. Purified human BRCA2 stimulates RAD51-mediated recombination. Nature 467, 678–683 (2010) source
Not checked in the free run.
May combine two claims.
Findingown dataIn BARD1-deficient cells, wild-type BARD1 fully rescues HR, whereas the AAE mutant only partly does.
“while the ectopic expression of BARD1WTres in BARD1 deficient cells fully restored HR proficiency, that of BARD1AAEres resulted in only partial complementation”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataEctopically expressed Flag-SBP tagged wild type and mutant BARD1 were less abundant than endogenous BARD1.
“As the abundance of ectopically expressed Flag-SBP tagged wild type and mutant BARD1 was lower than endogenous BARD1, we revealed it with anti-Flag antibody in Western blot analysis.”
Quote in the paperNot a substantial claim- Rests on an assumption: The antibodies used in immunoblotting are specific for their intended targets.
May combine two claims.
Findingown dataUnder two conditions-pre-incubating ssDNA with RAD51, or premixing ssDNA and plasmid DNA-BRCA2-DSS1 did not stimulate D-loop formation by BRCA1-BARD1-RAD51.
“We found no stimulatory effect of BRCA2-DSS1 on D-loop formation by BRCA1-BARD1-RAD51 when the ssDNA substrate was pre-incubated with RAD51 or when ssDNA and plasmid DNA were premixed”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataThe complex does not alter where bound dsDNA sits, the distances between bound molecules, or their koff.
“we found no evidence of BRCA1-BARD1 having any effect on the binding site distributions, the pairwise distance distributions, and the resident time (koff) of the bound dsDNA”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataA GST-tagged BARD1 piece containing residues 123-162 binds RAD51, so this segment contains the interaction domain.
“a GST-tagged BARD1 fragment harboring these residues could efficiently associate with RAD51 (Extended Data Fig. 6h), indicating that it encompasses the RAD51 interaction domain”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataDepleting BRCA1 reduces RAD51 focus formation, both spontaneously and after γ-rays.
“knockdown of endogenous BRCA1 diminished RAD51 focus formation, either spontaneously or after γ-ray exposure”
Quote in the paperSubstantial claimThe quote only partly states this claim.
Findingown dataBy RPA32 S4/S8 phosphorylation, AAE cells show more persistent DNA damage 72 h after MMC release.
“as indicated by S4/S8 phosphorylation of RPA32, BARD1AAEres cells retained a much higher level of DNA damage 72 h after release from MMC treatment”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataRAD51's core domain, T3, binds BRCA1-BARD1, but not the BRCA1-BARD11-142 or BRCA11-500-BARD1 complexes.
“the core domain of RAD51 (referred to as T3), which has been implicated in BRCA2 binding via the BRC4 repeat of the latter41, is able to interact with BRCA1-BARD1 (Extended Data Fig. 3f), but not with BRCA1-BARD11-142 or BRCA11-500-BARD1”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [41] Pellegrini, L. et al. Insights into DNA recombination from the structure of a RAD51–BRCA2 complex. Nature 420, 287–293 (2002) source
Not checked in the free run.
May combine two claims.
Findingown dataMutants defective in BARD1-RAD51 binding, or missing BRCA1's RAD51 interaction domain, cannot promote pairing with the duplex target.
“BRCA1-BARD1 mutants impaired for BARD1-RAD51 interaction or lacking the RAD51 interaction domain of BRCA1 are unable to promote pairing with the duplex target”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataThe Δ123-162 mutant binds DNA normally yet cannot bind RAD51 and does not boost D-loop or synaptic complex assembly.
“We found that BRCA1-BARD1Δ123-162, while retaining normal DNA binding activity (Extended Data Fig. 7a, b), is defective in RAD51 interaction (Fig. 4c) and, accordingly, fails to enhance D-loop formation (Fig. 4d, e) or synaptic complex assembly (Extended Data Fig. 7c, d).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataSubstoichiometric BRCA1-BARD1 strongly boosts D-loop formation with either ATP or AMP-PNP, but BRCA2-DSS1 does not.
“Importantly, BRCA1-BARD1, in amounts substoichiometric to RAD51, strongly enhanced the reaction, regardless of whether ATP (Extended Data Fig. 4g–i) or the non-hydrolyzable analogue AMP-PNP (Fig. 2a–c) was used as the nucleotide cofactor, while BRCA2-DSS1 did not show any stimulation”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataBARD1 K140N, a cancer-associated change, leaves DNA binding intact but weakens RAD51 binding and the complex's ability to promote D-loop and synaptic complex assembly.
“Importantly, the results revealed that, while the mutation has no impact on DNA binding (Extended Data Fig. 7a, b), it attenuates the affinity of BRCA1-BARD1 for RAD51 (Fig. 4c) and also compromises the ability of the tumor suppressor complex to enhance D-loop formation and synaptic complex assembly (Fig. 4d, e and Extended Data Fig. 7c, d).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataBRCA1 and BARD1 play a role in homologous recombination and RAD51 focus formation.
“Extended Data Fig. 8 Role of BRCA1 and BARD1 in HR and RAD51 focus formation”
Quote in the paperSubstantial claim- Rests on an assumption: RAD51 focus formation is a valid marker of homologous recombination.
- Rests on an assumption: The DR-GFP reporter assay measures homologous recombination proficiency.
May combine two claims.
Findingown datasiRNA depletion of BRCA1 or BARD1 lowers HR in both the DR-GFP and CRISPR/Cas9 gene-targeting assays.
“knockdown of endogenous BRCA1 or BARD1 by siRNA impaired HR in both systems”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataThe AAE mutant binds DNA normally, but its RAD51 binding and its ability to stimulate D-loop and synaptic complex assembly are reduced.
“Biochemical testing revealed that, even though the mutant complex binds DNA normally (Extended Data Fig. 7a, b), it is impaired not only for RAD51 association (Fig. 4c), but also for the ability to stimulate D-loop formation and synaptic complex assembly (Fig. 4d, e; Extended Data Figs. 5g and 7c, d).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataLoss of 53BP1 partly rescues the HR defect from BRCA1 deficiency, but not the defect in BARD1-deficient cells.
“Interestingly, even though depletion of 53BP1, an inhibitor of DNA end resection50, partially overcame the HR defect associated with BRCA1 deficiency (Extended Data Fig. 8h, i), it did not suppress the HR defect in BARD1 deficient cells (Extended Data Fig. 8j, k).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [50] Bunting, S. F. et al. 53BP1 inhibits homologous recombination in brca1-deficient cells by blocking resection of DNA breaks. Cell 141, 243–254 (2010) source
Not checked in the free run.
May combine two claims.
Findingown dataThe BRCA11-500-BARD1 and BRCA1Δ758-1064-BARD1 mutants bind DNA well but bind RAD51 weakly, and neither strongly promotes RAD51 D-loop or synaptic complex assembly.
“These mutant complexes appeared to be proficient in DNA binding (Extended Data Fig. 10a–e) but were weakened for RAD51 interaction (Extended Data Fig. 10f–h). Importantly, neither mutant complex could strongly enhance RAD51-mediated D-loop formation (Extended Data Fig. 10i, j) or synaptic complex assembly (Extended Data Figs. 5g and 7c–f).”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataThe complex's RAD51 binding is species-specific, and both BRCA1 and BARD1 take part in it.
“These results helped establish that BRCA1-BARD1 associates with RAD51 in a species-specific manner, and that both proteins in the complex participate in RAD51 interaction.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataEach protein, BRCA1 and BARD1, adds to the complex's ability to bind DNA.
“Taken together, our results showed that both BRCA1 and BARD1 contribute to the DNA binding capability of the BRCA1-BARD1 complex.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenThe threshold for detecting RAD51 foci was set using sham-irradiated samples.
“The threshold for foci detection was determined based on sham-irradiated samples”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataThe DR-GFP assay results came from 3 to 5 transfections across at least 3 independent experiments.
“The results were derived from 3 to 5 transfections of at least 3 independent experiments.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenUnless otherwise stated, statistical significance was assessed with a two-tailed unpaired Student's t-test.
“Unless stated otherwise, statistical significance was assessed by two-tailed unpaired Student’s t-test.”
Quote in the paperNot a substantial claimMay combine two claims.
Interpretationown dataBARD1 K140N, a cancer-associated mutation, weakens both physical and functional interaction with RAD51.
“we have provided evidence that the cancer-associated mutation K140N in BARD1 compromises the physical and functional interactions of BRCA1-BARD1 with RAD51”
Quote in the paperSubstantial claimClassified as probably not a substantial claim. May combine two claims.
Study design and conductnone givenP values of 0.05 or less and 0.01 or less were considered significant.
“P ≤ 0.05 (*) and P≤ 0.01 (**) was considered significant.”
Quote in the paperSubstantial claimMay combine two claims.
InterpretationreasoningRAD51 binding probably helps the presynaptic filament engage dsDNA, and BRCA1-BARD1's recognition of unwound DNA likely promotes the nascent DNA joint in the D-loop.
“It is likely that physical association with RAD51 facilitates dsDNA engagement by the presynaptic filament and that the specific recognition of unwound DNA by BRCA1-BARD1 enhances the formation of the nascent DNA joint in the D-loop reaction.”
Quote in the paperSubstantial claimClassified as probably not a substantial claim.
PremisecitationThe DR-U2OS cell line used in the study carries one integrated copy of the DR-GFP reporter.
“The DR-U2OS cell line containing a single integrated copy of the DR-GFP reporter was used46,47.”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [46] Nakanishi, K. et al. Human Fanconi anemia monoubiquitination pathway promotes homologous DNA repair. Proc. Natl Acad. Sci. USA 102, 1110–1115 (2005) source
Not checked in the free run.
- cites [47] Xia, B. et al. Control of BRCA2 cellular and clinical functions by a nuclear partner, PALB2. Mol. Cell 22, 719–729 (2006) source
Not checked in the free run.
- Rests on an assumption: The DR-GFP reporter assay measures homologous recombination proficiency.
May combine two claims.
Interpretationown dataAAE cells are defective in HR repair despite normal RAD51 focus formation.
“These results showed that HR repair is deficient in BARD1AAEres cells even though RAD51 focus formation is not affected.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataBRCA1-BARD1 works with the RAD51 presynaptic filament to build the synaptic complex, which precedes D-loop formation.
“Mechanistically, BRCA1-BARD1 functions with the RAD51 presynaptic filament in the assembly of the synaptic complex, a critical precursor to D-loop formation”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenGroup allocation and outcome assessment in the RAD51 foci experiments were fully blinded.
“Group allocation and outcome assessment were done in a fully blinded manner.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductown dataStatistical analysis used Prism 7 on data from at least three independent experiments.
“The statistical analysis was performed using Prism 7 (GraphPad Software, Inc., La Jolla, CA; http://www.graphpad.com/quickcalcs/ttest1.cfm) on the data from at least three independent experiments, as specified.”
Quote in the paperNot a substantial claimMay combine two claims.
Premiseown dataThe complex aids resection of DNA ends, producing a single-stranded template that recruits BRCA2-PALB2 and RAD51.
“BRCA1-BARD1 facilitates the nucleolytic resection of DNA ends to generate a single-stranded template for the recruitment of another tumor suppressor complex BRCA2-PALB2 and the recombinase RAD51.”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [4] Prakash, R., Zhang, Y., Feng, W. & Jasin, M. Homologous recombination and human health: the roles of BRCA1, BRCA2, and associated proteins. Cold Spring Harb. Perspect. Biol. 7, a016600 (2015) source
Not checked in the free run.
- cites [33] Daley, J. M. & Sung, P. 53BP1, BRCA1, and the choice between recombination and end joining at DNA double-strand breaks. Mol. Cell. Biol. 34, 1380–1388 (2014) source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataThe nuclear localization of endogenous BRCA1 and ectopically expressed Flag-SBP tagged BARD1 or the AAE mutant in HeLa cells was verified by Western blot.
“Western blot to verify the nuclear localization of endogenous BRCA1 and ectopically expressed Flag-SBP tagged BARD1 or the AAE mutant in HeLa cells.”
Quote in the paperNot a substantial claim- Rests on an assumption: The antibodies used in immunoblotting are specific for their intended targets.
Probably not a substantial claim: may not pass S3 (load-bearing). The quote only partly states this claim.
Study design and conductown dataThe CRISPR/Cas9 gene targeting assay results came from 3 to 5 transfections across at least 3 independent experiments.
“The results were derived from 3 to 5 transfections of at least 3 independent experiments.”
Quote in the paperNot a substantial claim
The paper relies on this without support.
RAD51 focus formation is a valid marker of homologous recombination.
“Quantification of RAD51 foci at various time points after exposure to 4 Gy γ-rays or sham irradiation.”
The paper relies on this without support.
The DR-GFP reporter assay measures homologous recombination proficiency.
“HR proficiency was determined by counting the fraction of GFP-positive cells using a BD FACS Calibur S at 72 h post I-SceI transfection.”
The paper relies on this without support.
The antibodies used in immunoblotting are specific for their intended targets.
“Blots (20–50 μg of total protein) were probed with the following antibodies: BARD1 (Bethyl, A300-263A; Santa Cruz Biotech, Sc11438), BRCA1 (Abcam, ab16780), 53BP1 (Abcam, ab36823), Flag M2-HRP (Sigma, A8592), Phospho RPA32 S4/S8 (Bethyl, A300-245A), BRCA2 (EMD Millipore, OP95-100UG), RAD51 (Santa Cruz Biotech, sc-8349), Actin (Abcam, ab3280), Tubulin (Santa Cruz Biotech, sc-53030), HA.11 (16B12) (”
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The 4 patients with deficiencies in BRCA1-binding proteins BARD1, BRIP1, FAM175A and FANCA were all predicted as having BRCA1-type HRD.
“Likewise, the 4 patients with deficiencies in the BRCA1-binding proteins, BARD124 (n = 1), BRIP125 (n = 1), FAM175A26 (n = 1) and FANCA27 (n = 1), were all predicted as having BRCA1-type HRD.”
From Pan-cancer landscape of homologous recombination deficiency. (2020) · cites this paper as [24]
Cites
1 retracted
RETRACTED ARTICLE: A mechanism for the suppression of homologous recombination in G1 cells
Orthwein, A., Noordermeer, S. M., Wilson, M. D., Landry, S., Enchev, R. I., Sherker, A., Munro, M., Pinder, J., Salsman, J., Dellaire, G., et al. (2015) · Nature · doi:10.1038/nature16142 · Cited by 471 · see citing works
RetractedCerami, E., Gao, J., Dogrusoz, U., Gross, B. E., Sumer, S. O., Aksoy, B. A., Jacobsen, A., Byrne, C. J., Heuer, M. L., Larsson, E., et al. (2012) · Cancer Discovery · doi:10.1158/2159-8290.cd-12-0095 · Cited by 17,455 · see citing works
Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal
Gao, J., Aksoy, B. A., Dogrusoz, U., Dresdner, G., Gross, B., Sumer, S. O., Sun, Y., Jacobsen, A., Sinha, R., Larsson, E., et al. (2013) · Science Signaling · doi:10.1126/scisignal.2004088 · Cited by 15,160 · see citing works
Dignam, J. D., Lebovitz, R. M., & Roeder, R. G. (1983) · Nucleic Acids Research · doi:10.1093/nar/11.5.1475 · Cited by 11,262 · see citing works
A Strong Candidate for the Breast and Ovarian Cancer Susceptibility Gene BRCA1
Miki, Y., Swensen, J. J., Shattuck-Eidens, D. M., Futreal, P. A., Harshman, K., Tavtigian, S. V., Liu, Q., Cochran, C., Bennett, L. M., Ding, W., et al. (1994) · Science · doi:10.1126/science.7545954 · Cited by 6,069 · see citing works
Mechanism of Eukaryotic Homologous Recombination
Filippo, J. S., Sung, P., & Klein, H. L. (2008) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.77.061306.125255 · Cited by 1,686 · see citing works
Self-citation53BP1 Inhibits Homologous Recombination in Brca1-Deficient Cells by Blocking Resection of DNA Breaks
Bunting, S. F., Callén, E., Wong, N., Chen, H.-T., Polato, F., Gunn, A., Bothmer, A., Feldhahn, N., Fernandez-Capetillo, O., Cao, L., et al. (2010) · Cell · doi:10.1016/j.cell.2010.03.012 · Cited by 1,671 · see citing works
BRCA1 and BRCA2: different roles in a common pathway of genome protection
Roy, R., Chun, J., & Powell, S. N. (2011) · Nature reviews. Cancer · doi:10.1038/nrc3181 · Cited by 1,479 · see citing works
Association of BRCA1 with Rad51 in Mitotic and Meiotic Cells
Scully, R., Chen, J., Plug, A., Xiao, Y., Weaver, D., Feunteun, J., Ashley, T., & Livingston, D. M. (1997) · Cell · doi:10.1016/s0092-8674(00)81847-4 · Cited by 1,459 · see citing works
BRCA1 mutations in primary breast and ovarian carcinomas.
Futreal, P., Liu, Q., Shattuck-Eidens, D., Cochran, C., Harshman, K., Tavtigian, S., Bennett, L., Haugen-Strano, A., Swensen, J., & Miki, Y. (1994) · Science · doi:10.1126/science.7939630 · Cited by 1,378 · see citing works
Brca1 Controls Homology-Directed DNA Repair
Moynahan, M. E., Chiu, J. W., Koller, B. H., & Jasin, M. (1999) · Molecular Cell · doi:10.1016/s1097-2765(00)80202-6 · Cited by 1,245 · see citing works
BRCA1 and BRCA2: 1994 and beyond
Narod, S. A., & Foulkes, W. D. (2004) · Nature Reviews Cancer · doi:10.1038/nrc1431 · Cited by 967 · see citing works
Schlacher, K., Wu, H., & Jasin, M. (2012) · Cancer Cell · doi:10.1016/j.ccr.2012.05.015 · Cited by 936 · see citing works
Homologous Recombination and Human Health: The Roles of BRCA1, BRCA2, and Associated Proteins
Prakash, R., Zhang, Y., Feng, W., & Jasin, M. (2015) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a016600 · Cited by 869 · see citing works
Catalysis of ATP-Dependent Homologous DNA Pairing and Strand Exchange by Yeast RAD51 Protein
Sung, P. (1994) · Science · doi:10.1126/science.8066464 · Cited by 869 · see citing works
Self-citationControl of BRCA2 Cellular and Clinical Functions by a Nuclear Partner, PALB2
Xia, B., Sheng, Q., Nakanishi, K., Ohashi, A., Wu, J., Christ, N., Liu, X., Jasin, M., Couch, F. J., & Livingston, D. M. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.05.022 · Cited by 861 · see citing works
Identification of a RING protein that can interact in vivo with the BRCA1 gene product
Wu, L. C., Wang, Z. W., Tsan, J. T., Spillman, M. A., Phung, A., Xu, X. L., Yang, M.-C. W., Hwang, L.-Y., Bowcock, A. M., & Baer, R. J. (1996) · Nature Genetics · doi:10.1038/ng1296-430 · Cited by 743 · see citing works
Purified human BRCA2 stimulates RAD51-mediated recombination
Jensen, R. B., Carreira, A., & Kowalczykowski, S. C. (2010) · Nature · doi:10.1038/nature09399 · Cited by 715 · see citing works
Self-citationInsights into DNA recombination from the structure of a RAD51–BRCA2 complex
Pellegrini, L., Yu, D. S., Lo, T., Anand, S., Lee, M., Blundell, T. L., & Venkitaraman, A. R. (2002) · Nature · doi:10.1038/nature01230 · Cited by 704 · see citing works
BRCA1: cell cycle checkpoint, genetic instability, DNA damage response and cancer evolution
Deng, C. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkl010 · Cited by 584 · see citing works
BRCA1 Recruitment to Transcriptional Pause Sites Is Required for R-Loop-Driven DNA Damage Repair
Hatchi, E., Skourti-Stathaki, K., Ventz, S., Pinello, L., Yen, A., Kamieniarz-Gdula, K., Dimitrov, S. D., Pathania, S., McKinney, K. M., Eaton, M. L., et al. (2015) · Molecular Cell · doi:10.1016/j.molcel.2015.01.011 · Cited by 480 · see citing works
Human Fanconi anemia monoubiquitination pathway promotes homologous DNA repair
Nakanishi, K., Yang, Y.-G., Pierce, A. J., Taniguchi, T., Digweed, M., D'Andrea, A. D., Wang, Z.-Q., & Jasin, M. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0407796102 · Cited by 384 · see citing works
53BP1, BRCA1, and the Choice between Recombination and End Joining at DNA Double-Strand Breaks
Daley, J. M., & Sung, P. (2014) · Molecular and Cellular Biology · doi:10.1128/mcb.01639-13 · Cited by 318 · see citing works
Self-citationHuman BRCA1–BARD1 ubiquitin ligase activity counteracts chromatin barriers to DNA resection
Densham, R. M., Garvin, A. J., Stone, H. R., Strachan, J., Baldock, R. A., Daza-Martín, M., Fletcher, A., Blair-Reid, S., Beesley, J. F. J., Johal, B., et al. (2016) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.3236 · Cited by 283 · see citing works
Biallelic Mutations in BRCA1 Cause a New Fanconi Anemia Subtype
Sawyer, S. L., Tian, L., Kähkönen, M., Schwartzentruber, J., Kircher, M., Majewski, J., Dyment, D. A., Innes, A. M., Boycott, K. M., Moreau, L. A., et al. (2014) · Cancer Discovery · doi:10.1158/2159-8290.cd-14-1156 · Cited by 283 · see citing works
Paull, T. T., Cortez, D., Bowers, B., Elledge, S. J., & Gellert, M. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.111125998 · Cited by 282 · see citing works
Pinder, J. B., Salsman, J., & Dellaire, G. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv993 · Cited by 276 · see citing works
DNA Sequence Alignment by Microhomology Sampling during Homologous Recombination
Qi, Z., Redding, S., Lee, J. Y., Gibb, B., Kwon, Y., Niu, H., Gaines, W. A., Sung, P., & Greene, E. C. (2015) · Cell · doi:10.1016/j.cell.2015.01.029 · Cited by 233 · see citing works
Self-citationThe BARD1-CstF-50 Interaction Links mRNA 3′ End Formation to DNA Damage and Tumor Suppression
Kleiman, F. E., & Manley, J. L. (2001) · Cell · doi:10.1016/s0092-8674(01)00270-7 · Cited by 215 · see citing works
Functional Interaction of BRCA1-Associated BARD1 with Polyadenylation Factor CstF-50
Kleiman, F. E., & Manley, J. L. (1999) · Science · doi:10.1126/science.285.5433.1576 · Cited by 193 · see citing works
Thai, T. (1998) · Human Molecular Genetics · doi:10.1093/hmg/7.2.195 · Cited by 185 · see citing works
Base triplet stepping by the Rad51/RecA family of recombinases
Lee, J. Y., Terakawa, T., Qi, Z., Steinfeld, J. B., Redding, S., Kwon, Y., Gaines, W. A., Zhao, W., Sung, P., & Greene, E. C. (2015) · Science · doi:10.1126/science.aab2666 · Cited by 182 · see citing works
Self-citationBRCA1 regulates microRNA biogenesis via the DROSHA microprocessor complex
Kawai, S., & Amano, A. (2012) · The Journal of Cell Biology · doi:10.1083/jcb.201110008 · Cited by 181 · see citing works
Promotion of BRCA2-Dependent Homologous Recombination by DSS1 via RPA Targeting and DNA Mimicry
Zhao, W., Vaithiyalingam, S., San Filippo, J., Maranon, D. G., Jimenez-Sainz, J., Fontenay, G. V., Kwon, Y., Leung, S. G., Lu, L., Jensen, R. B., et al. (2015) · Molecular Cell · doi:10.1016/j.molcel.2015.05.032 · Cited by 177 · see citing works
Self-citationSavage, K. I., Gorski, J. J., Barros, E. M., Irwin, G. W., Manti, L., Powell, A. J., Pellagatti, A., Lukashchuk, N., McCance, D. J., McCluggage, W. G., et al. (2014) · Molecular Cell · doi:10.1016/j.molcel.2014.03.021 · Cited by 177 · see citing works
Basis for Avid Homologous DNA Strand Exchange by Human Rad51 and RPA
Sigurðsson, S., Trujillo, K. M., Song, B., Stratton, S. A., & Sung, P. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m010011200 · Cited by 171 · see citing works
Self-citationMechanisms of BRCA1 Tumor Suppression
Silver, D. P., & Livingston, D. M. (2012) · Cancer Discovery · doi:10.1158/2159-8290.cd-12-0221 · Cited by 159 · see citing works
Wiese, C., Dray, E. V., Groesser, T., San Filippo, J., Shi, I. Y., Collins, D. W., Tsai, M.-S., Williams, G., Rydberg, B., Sung, P., et al. (2007) · OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) · doi:10.1016/j.molcel.2007.08.027 · Cited by 149 · see citing works
Self-citationMcCarthy, E. E., Celebi, J. T., Baer, R. J., & Ludwig, T. E. (2003) · Molecular and Cellular Biology · doi:10.1128/mcb.23.14.5056-5063.2003 · Cited by 136 · see citing works
Recombination Mediator and Rad51 Targeting Activities of a Human BRCA2 Polypeptide
Filippo, J. S., Chi, P., Sehorn, M. G., Etchin, J., Krejci, L., & Sung, P. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m601249200 · Cited by 134 · see citing works
Self-citationIs there more to BARD1 than BRCA1?
Irminger‐Finger, I., & Jefford, C. E. (2006) · Nature reviews. Cancer · doi:10.1038/nrc1878 · Cited by 120 · see citing works
BARD1 Participates with BRCA1 in Homology-Directed Repair of Chromosome Breaks
Westermark, U., Reyngold, M., Olshen, A. B., Baer, R. J., Jasin, M., & Moynahan, M. E. (2003) · Molecular and Cellular Biology · doi:10.1128/mcb.23.21.7926-7936.2003 · Cited by 119 · see citing works
Ghimenti, C., Sensi, E., Presciuttini, S., Brunetti, I. M., Conte, P., Bevilacqua, G., & Caligo, M. A. (2002) · Genes Chromosomes and Cancer · doi:10.1002/gcc.1223 · Cited by 110 · see citing works
The role of BRCA1 in DNA double-strand repair: Past and present
Caestecker, K. W., & Van de Walle, G. R. (2013) · Experimental Cell Research · doi:10.1016/j.yexcr.2012.11.013 · Cited by 108 · see citing works
Karppinen, S., Heikkinen, K., Rapakko, K., & Winqvist, R. (2004) · Journal of Medical Genetics · doi:10.1136/jmg.2004.020669 · Cited by 96 · see citing works
Godwin, A. K., Vanderveer, L., Schultz, D., Lynch, H. T., Altomare, D. A., Buetow, K. H., Daly, M., Getts, L. A., Masny, A., & Rosenblum, N. (1994) · PubMed Central · Cited by 81 · see citing works
Mutational analysis of BARD1 in familial breast cancer patients in Japan
Ishitobi, M., Miyoshi, Y., Hasegawa, S., Egawa, C., Tamaki, Y., Monden, M., & Noguchi, S. (2003) · Cancer Letters · doi:10.1016/s0304-3835(03)00387-2 · Cited by 73 · see citing works
Aberrant expression of BARD1 in breast and ovarian cancers with poor prognosis
Wu, J., Vlastos, A., Pelte, M., Caligo, M. A., Bianco, A., Krause, K., Laurent, G. J., & Irminger‐Finger, I. (2005) · International Journal of Cancer · doi:10.1002/ijc.21428 · Cited by 73 · see citing works
BRCA1 DNA-Binding Activity Is Stimulated by BARD1
Simons, A. M., Horwitz, A. A., Starita, L. M., Griffin, K., Williams, R. S., Glover, J. N. M., & Parvin, J. D. (2006) · Cancer Research · doi:10.1158/0008-5472.can-05-3296 · Cited by 60 · see citing works
Mechanistic insights into the role of Hop2-Mnd1 in meiotic homologous DNA pairing
Zhao, W., Saro, D., Hammel, M., Kwon, Y., Xu, Y., Rambo, R. P., Williams, G. J., Chi, P., Lu, L., Pezza, R. J., et al. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt924 · Cited by 57 · see citing works
Self-citationBRCA1 and MicroRNAs: Emerging Networks and Potential Therapeutic Targets
Chang, S., & Sharan, S. K. (2012) · Molecules and Cells · doi:10.1007/s10059-012-0118-y · Cited by 57 · see citing works
Zhao, W., & Sung, P. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv259 · Cited by 56 · see citing works
Self-citationReyngold, M., Nandula, S. V., Modi, A. P., Wang, S., Jasin, M., Murty, V. V. V. S., Ludwig, T., & Baer, R. J. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m705198200 · Cited by 56 · see citing works
Kovalenko, O. V., Wiese, C., & Schild, D. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkl665 · Cited by 33 · see citing works
Self-citationSymington, L. S. (2014) · Nature · doi:10.1038/nature13751 · Cited by 17 · see citing works
Flagged first, then by citations
1 of the 56 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
DNA double-strand break repair-pathway choice in somatic mammalian cells
Scully, R., Panday, A., Elango, R., & Willis, N. A. (2019) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-019-0152-0 · Cited by 1,445 · see citing works
Homologous recombination and the repair of DNA double-strand breaks
Wright, W. D., Shah, S. S., & Heyer, W.-D. (2018) · Journal of Biological Chemistry · doi:10.1074/jbc.tm118.000372 · Cited by 713 · see citing works
“Besides the well-established role of BRCA1 in DSB resection control (5), human BRCA1BARD1 were identified to play an unanticipated role in RAD51-mediated homolougous pairing that correlated with the interaction getween BRCA1 and RAD51 (68).”
BackgroundPan-cancer landscape of homologous recombination deficiency.
Nguyen, L., W. M. Martens, J., Van Hoeck, A., & Cuppen, E. (2020) · Nature communications · doi:10.1038/s41467-020-19406-4 · Cited by 532 · see citing works
“Likewise, the 4 patients with deficiencies in the BRCA1-binding proteins, BARD1[25] (n=1), BRIP1[26] (n=1), FAM175A[27] (n=1) and FANCA[28] (n=1), were all predicted as having BRCA1type HRD.”
BackgroundPrevalence of Homologous Recombination–Related Gene Mutations Across Multiple Cancer Types
Heeke, A. L., Pishvaian, M. J., Lynce, F. C., Xiu, J., Brody, J. R., Chen, W.-J., Baker, T. M., Marshall, J. L., & Isaacs, C. J. (2018) · JCO Precision Oncology · doi:10.1200/po.17.00286 · Cited by 472 · see citing works
PARP Inhibitor Resistance: A Tug-of-War in BRCA-Mutated Cells
Noordermeer, S. M., & van Attikum, H. (2019) · Trends in Cell Biology · doi:10.1016/j.tcb.2019.07.008 · Cited by 458 · see citing works
DNA Repair Pathway Choices in CRISPR-Cas9-Mediated Genome Editing
Xue, C., & Greene, E. C. (2021) · Trends in Genetics · doi:10.1016/j.tig.2021.02.008 · Cited by 431 · see citing works
Self-citationSyed, A., & Tainer, J. A. (2018) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-062917-012415 · Cited by 390 · see citing works
“Besides contributing to HR pathway choice, the BRCA1–BARD1 complex also plays an indispensable role in stimulating RAD51 recombinase activity (114).”
BackgroundThe antitumorigenic roles of BRCA1–BARD1 in DNA repair and replication
Tarsounas, M., & Sung, P. (2020) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-020-0218-z · Cited by 366 · see citing works
Self-citationRanjha, L., Howard, S. M., & Ćejka, P. (2018) · Chromosoma · doi:10.1007/s00412-017-0658-1 · Cited by 324 · see citing works
Karagöz, G. E., Acosta‐Alvear, D., & Walter, P. (2019) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a033886 · Cited by 302 · see citing works
Signaling Pathways in Cancer: Therapeutic Targets, Combinatorial Treatments, and New Developments
Yip, H. Y. K., & Papa, A. (2021) · Cells · doi:10.3390/cells10030659 · Cited by 332 · see citing works
“This process is facilitated by the BRCA1/BARD1 (BRCA1-associated RING domain protein 1) and BRCA2/PALB2 complexes [218].”
BackgroundRAD51 Gene Family Structure and Function
Bonilla, B., Hengel, S. R., Grundy, M. K., & Bernstein, K. A. (2020) · Annual Review of Genetics · doi:10.1146/annurev-genet-021920-092410 · Cited by 259 · see citing works
PARP inhibitors in pancreatic cancer: molecular mechanisms and clinical applications
Zhu, H., Wei, M., Xu, J., Hua, J., Chen, L., Meng, Q., Zhang, Y., Liu, J., Zhang, B., Yu, X., et al. (2020) · Molecular Cancer · doi:10.1186/s12943-020-01167-9 · Cited by 258 · see citing works
BAP1: Not just a BRCA1-associated protein
Louie, B. H., & Kurzrock, R. (2020) · Cancer Treatment Reviews · doi:10.1016/j.ctrv.2020.102091 · Cited by 191 · see citing works
“[19,20] Moreover, the BRCA1/ BARD1 complex was recently shown to be directly involved in promoting RAD51-mediated homologous pairing.[9] Taken together, this evidence suggests that BAP1 plays an extensive role in coordinating BRCA1, BARD1 and RAD51 in the process of RAD51-mediated homologous recombination DNA repair,…”
BackgroundLiao, H., Ji, F., Helleday, T., & Ying, S. (2018) · EMBO Reports · doi:10.15252/embr.201846263 · Cited by 185 · see citing works
“Afterwards, the RAD51 proteins are removed by RAD54, allowing for subsequent DNA synthesis and junction resolution to complete DSB repair [113,114].”
Structural basis of homologous recombination
Sun, Y., McCorvie, T. J., Yates, L. A., & Zhang, X. (2019) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-019-03365-1 · Cited by 160 · see citing works
The BRCA Tumor Suppressor Network in Chromosome Damage Repair by Homologous Recombination
Zhao, W., Wiese, C., Kwon, Y., Hromas, R., & Sung, P. (2019) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-013118-111058 · Cited by 161 · see citing works
“DNA damage-induced RAD51 focus formation becomes impaired when BRCA1 or BARD1 is absent, thus implicating the BRCA1-BARD1 complex in DNA end resection and RAD51 recruitment (89, 115, 116).”
BackgroundInfluentialSelf-citationLiu, S., Yu, H., Wang, J., Li, L., Yuan, J., Zhang, B., Wang, Z., Ji, J., & Kong, D. (2021) · Cell · doi:10.1016/j.cell.2021.01.048 · Cited by 156 · see citing works
Mechanism of tandem duplication formation in BRCA1-mutant cells
Willis, N. A., Frock, R. L., Menghi, F., Duffey, E. E., Panday, A., Camacho, V., Hasty, P., Liu, E. T., Alt, F. W., & Scully, R. (2017) · Nature · doi:10.1038/nature24477 · Cited by 136 · see citing works
Mechanisms of BRCA1–BARD1 nucleosome recognition and ubiquitylation
Hu, Q., Botuyan, M. V., Zhao, D., Cui, G., Mer, E., & Mer, G. (2021) · Nature · doi:10.1038/s41586-021-03716-8 · Cited by 137 · see citing works
Meng, X. L., Lou, Q., Yang, W., Wang, Y., Chen, R., Wang, L., Xu, T., & Zhang, L. (2021) · 癌症:英文版 · doi:10.1002/cac2.12194 · Cited by 135 · see citing works
“[134] indicated that the BRCA1BARD1 complex promoted the assembly of synaptic complexes, which are key intermediates in RAD51-mediated DNA repair.”
BackgroundIsomerization of BRCA1–BARD1 promotes replication fork protection
Daza-Martín, M., Starowicz, K., Jamshad, M., Tye, S., Ronson, G. E., Mackay, H. L., Chauhan, A. S., Walker, A. K., Stone, H. R., Beesley, J. F. J., et al. (2019) · Nature · doi:10.1038/s41586-019-1363-4 · Cited by 127 · see citing works
Role of Rad51 and DNA repair in cancer: A molecular perspective
Laurini, E., Marson, D., Fermeglia, A., Aulić, S., Fermeglia, M., & Pricl, S. (2020) · Pharmacology & Therapeutics · doi:10.1016/j.pharmthera.2020.107492 · Cited by 128 · see citing works
Mammalian ALKBH1 serves as an N6-mA demethylase of unpairing DNA
Zhang, M., Yang, S., Nelakanti, R. V., et al. (2020) · Cell Research · doi:10.1038/s41422-019-0237-5 · Cited by 128 · see citing works
Self-citationUbiquitin-specific protease 7 sustains DNA damage response and promotes cervical carcinogenesis
Su, D., Ma, S., Shan, L., Wang, Y., Wang, Y., Cao, C., Liu, B., Yang, C., Wang, L., Tian, S., et al. (2018) · Journal of Clinical Investigation · doi:10.1172/jci120518 · Cited by 117 · see citing works
Peng, Y., Liao, Q., Tan, W., Peng, C., Hu, Z., Chen, Y., Li, Z., Li, J., Zhen, B., Zhu, W., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-09232-8 · Cited by 104 · see citing works
Structure and repair of replication-coupled DNA breaks
Pavani, R., Tripathi, V., Vrtis, K. B., Zong, D., Chari, R., Callén, E., Pankajam, A. V., Zhen, G., Matos-Rodrigues, G. E., Yang, J., et al. (2024) · Science · doi:10.1126/science.ado3867 · Cited by 98 · see citing works
“BRCA1 is thought to facilitate recombination of canonical DSBs at two distinct steps: by promoting end resection ( 12 , 13 , 40 , 41 ) and, subsequently, RAD51 filament formation and strand invasion ( 42 – 44 ).”
The multi-functionality of UHRF1: epigenome maintenance and preservation of genome integrity
Mancini, M., Magnani, E., Macchi, F., & Bonapace, I. M. (2021) · Nucleic Acids Research · doi:10.1093/nar/gkab293 · Cited by 99 · see citing works
“These tails are substrates for the recombinase RAD51 that catalyse the homologous pairing and DNA strand exchange, together with BRCA2 that assists RAD51 loading onto RPA-coated ssDNA (146) (Figure 2B, step 4).”
BackgroundThe ubiquitin–proteasome system in breast cancer
Han, D., Wang, L., Jiang, S., & Yang, Q. (2023) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2023.05.006 · Cited by 104 · see citing works
Nacson, J., Krais, J. J., Bernhardy, A. J., Clausen, E., Feng, W., Wang, Y., Nicolas, É., Cai, K. Q., Tricarico, R., Hua, X., et al. (2018) · Cell Reports · doi:10.1016/j.celrep.2018.08.086 · Cited by 98 · see citing works
“BRCA1 plays a key role in preserving genome integrity through its involvement in HR DNA repair, with several well-characterized functions, including the initiation of DNA end resection, RAD51 loading, and homologous DNA pairing (Bouwman et al., 2010; Bunting et al., 2010; Sy et al., 2009; Zhang et al., 2009a, 2009b; Z…”
BackgroundKaranam, N. K., Ding, L., Asaithamby, A., & Story, M. D. (2019) · Translational research · doi:10.1016/j.trsl.2019.10.003 · Cited by 101 · see citing works
Replication stress induces accumulation of FANCD2 at central region of large fragile genes
Okamoto, Y., Iwasaki, W. M., Kugou, K., Takahashi, K., Oda, A., Sato, K., Kobayashi, W., Kawai, H., Sakasai, R., Takaori‐Kondo, A., et al. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky058 · Cited by 89 · see citing works
“80-mer and 90-mer single-stranded oligonucleotides with the sequences shown in the Supplementary Table S1 were synthesized and annealed to prepare D-loop (oligos A/B/C) or R-loop (oligos A/B/D) as described with slight modifications (42).”
MethodThe ubiquitin codes in cellular stress responses
Sheng, X., Xia, Z., Yang, H., & Hu, R. (2023) · Protein & Cell · doi:10.1093/procel/pwad045 · Cited by 113 · see citing works
“Moreover, BRCA1 binds to BRCA2 through PALB2 to assemble a complex that enhances recombinase RAD51 loading at DSBs and thus promotes HR repair (Sy et al. 2009; Zhang et al. 2009).”
BackgroundBRCA1/BARD1 site-specific ubiquitylation of nucleosomal H2A is directed by BARD1
Witus, S. R., Burrell, A. L., Farrell, D. P., Kang, J., Wang, M., Hansen, J. M., Pravat, A., Tuttle, L. M., Stewart, M. D., Brzović, P. S., et al. (2021) · Nature Structural & Molecular Biology · doi:10.1038/s41594-020-00556-4 · Cited by 84 · see citing works
Self-citationDNA Repair and Therapeutic Strategies in Cancer Stem Cells
Gillespie, M. S., Ward, C. M., & Davies, C. C. (2023) · Cancers · doi:10.3390/cancers15061897 · Cited by 96 · see citing works
Foo, T. K., & Xia, B. (2022) · Cancer Research · doi:10.1158/0008-5472.can-22-1535 · Cited by 100 · see citing works
Seo, H. A., Moeng, S., Sim, S., Kuh, H. J., Choi, S. Y., & Park, J. K. (2019) · Cells · doi:10.3390/cells9010029 · Cited by 93 · see citing works
“MiR‐182‐5p and MiR‐4429 BRCA1 DNA repair associated (BRCA1) functions in the repair of DNA double‐stranded breaks by enhancing the recombinase activity of RAD51 recombinase (RAD51) [62].”
BackgroundInfluentialStructural insight into BRCA1-BARD1 complex recruitment to damaged chromatin
Dai, L., Dai, Y., Han, J., et al. (2021) · Molecular Cell · doi:10.1016/j.molcel.2021.05.010 · Cited by 88 · see citing works
Bi-PE: bi-directional priming improves CRISPR/Cas9 prime editing in mammalian cells
Tao, R. X., Wang, Y., Jiao, Y., Hu, Y. F., Li, L., Jiang, L., Zhou, L., Qu, J., Chen, Q., & Yao, S. (2022) · Nucleic Acids Research · doi:10.1093/nar/gkac506 · Cited by 83 · see citing works
“Although the detailed fixation process remains unknown, the outcomes of prime editing suggested that the newly reverse transcribed ssDNA carrying edits must replace the original sequences, which resembled the process of ssDNA invasion and flap cleavage during homology directed double strand break (DSB) repair (12,13).”
BackgroundThe Chromatin Response to Double-Strand DNA Breaks and Their Repair
Aleksandrov, R., Hristova, R. H., Stoynov, S., & Gospodinov, A. G. (2020) · Cells · doi:10.3390/cells9081853 · Cited by 75 · see citing works
“BRCA1-BARD1 facilitates homologous pairing and if sufficient base pairing occurs between the invading RAD51-coated strand and the invaded DNA molecule the non-base-paired strand of the invaded molecule is displaced in the form of a loop (D-loop) [74] and the 3′-end of the invasion strand is engaged by DNA polymerase δ…”
BackgroundThe Impact of Single- and Double-Strand DNA Breaks in Human Spermatozoa on Assisted Reproduction
Agarwal, A. K., Zenoaga-Barbăroşie, C., Ambar, R. F., et al. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21113882 · Cited by 80 · see citing works
“Both BRCA1 and BRCA2, along with other factors, such as RAD51 and the replication protein A (RPA) on the DNA strands, prevent the DNA degradation by exonucleases [57,63,64].”
BackgroundPost-Translational Modifications of Deubiquitinating Enzymes: Expanding the Ubiquitin Code
Wang, Y., & Wang, F. (2021) · Frontiers in Pharmacology · doi:10.3389/fphar.2021.685011 · Cited by 77 · see citing works
“In turn, UCHL3 deubiquitinates RAD51 and promotes the binding between BRCA2 and RAD51, which play an important role in DNA damage repair and the resistance of cancer cells to radiation and chemotherapy (Davies et al., 2001; Luo et al., 2016; Zhao et al., 2017).”
BackgroundKwon, Y., Rösner, H. I., Zhao, W., Selemenakis, P., He, Z., Kawale, A. S., Katz, J. N., Rogers, C. M., Neal, F. E., Shabestari, A. B., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-36211-x · Cited by 65 · see citing works
Self-citationBET Proteins as Attractive Targets for Cancer Therapeutics
Sarnik, J., Popławski, T., & Tokarz, P. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms222011102 · Cited by 76 · see citing works
Promotion of homology-directed DNA repair by polyamines
Lee, C.-Y., Su, G.-C., Huang, W., Ko, M.-Y., Yeh, H., Chang, G., Lin, S., & Chi, P. (2019) · Nature Communications · doi:10.1038/s41467-018-08011-1 · Cited by 72 · see citing works
Kornepati, A. V. R., Boyd, J. T., Murray, C., Saifetiarova, J., Avalos, B. D. L. P., Rogers, C. M., Bai, H., Padron, A. S., Liao, Y., Ontiveros, C., et al. (2022) · Cancer Research · doi:10.1158/0008-5472.can-21-2076 · Cited by 71 · see citing works
Self-citationDNA:RNA hybrids form at DNA double-strand breaks in transcriptionally active loci
Bader, A. S., & Bushell, M. (2020) · Cell Death and Disease · doi:10.1038/s41419-020-2464-6 · Cited by 62 · see citing works
Mechanism of BRCA1–BARD1 function in DNA end resection and DNA protection
Ceppi, I., Stritto, M. R. D., Mütze, M., Braunshier, S., Mengoli, V., Reginato, G., Võ, H. M. P., Jimeno, S., Acharya, A., Roy, M. M., et al. (2024) · Nature · doi:10.1038/s41586-024-07909-9 · Cited by 68 · see citing works
“The central BRCA1 region encoded by exon 11 is largely unstructured, mediates many protein–protein interactions and is necessary for resection based on cellular assays 8,42 .”
Xiong, Y., Wang, W., Deng, Q., Zhang, Z., Wang, Q., Yong, Z., Sun, C., Yang, X., & Li, Z. (2023) · Nano Today · doi:10.1016/j.nantod.2023.101767 · Cited by 67 · see citing works
Self-citationBRCA1 intronic Alu elements drive gene rearrangements and PARP inhibitor resistance
Wang, Y., Bernhardy, A. J., Nacson, J., Krais, J. J., Tan, Y., Nicolas, É., Radke, M. R., Handorf, E., Llop‐Guevara, A., Balmañà, J., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-13530-6 · Cited by 59 · see citing works
BRCA1-associated structural variations are a consequence of polymerase theta-mediated end-joining
Kamp, J. A., van Schendel, R., Dilweg, I. W., & Tijsterman, M. (2020) · Nature Communications · doi:10.1038/s41467-020-17455-3 · Cited by 65 · see citing works
BRCA1 Mutations in Cancer: Coordinating Deficiencies in Homologous Recombination with Tumorigenesis
Krais, J. J., & Johnson, N. (2020) · Cancer Research · doi:10.1158/0008-5472.can-20-1830 · Cited by 65 · see citing works
“BRCA1-BARD1 has also been shown to directly interact with, and enhance the recombinase activity of, RAD51 (44).”
BackgroundBelotserkovskaya, R., Gil, E. R., Lawrence, N. J., Butler, R., Clifford, G., Wilson, M. D., & Jackson, S. P. (2020) · Nature Communications · doi:10.1038/s41467-020-14563-y · Cited by 59 · see citing works
DNA folds threaten genetic stability and can be leveraged for chemotherapy
Zell, J., Sperti, F. R., Britton, S., & Monchaud, D. (2020) · RSC Chemical Biology · doi:10.1039/d0cb00151a · Cited by 58 · see citing works
The BRCA1/BARD1 ubiquitin ligase and its substrates
Witus, S. R., Stewart, M. D., & Klevit, R. E. (2021) · Biochemical Journal · doi:10.1042/bcj20200864 · Cited by 52 · see citing works
Yang, B., Zhang, S., Fang, X., & Kong, J. (2019) · Biosensors and Bioelectronics · doi:10.1016/j.bios.2019.111544 · Cited by 60 · see citing works
DNA damage response and repair in ovarian cancer: Potential targets for therapeutic strategies
Mirza‐Aghazadeh‐Attari, M., Ostadian, C., Saei, A. A., Mihanfar, A., Darband, S. G., Sadighparvar, S., Kaviani, M., Kafil, H. S., Yousefi, B., & Majidinia, M. (2019) · DNA repair · doi:10.1016/j.dnarep.2019.06.005 · Cited by 57 · see citing works
Fan, L., Xu, S., Zhang, F., Cui, X., Fazli, L., Gleave, M. E., Clark, D. J., Yang, A. J., Hussain, A., Rassool, F. V., et al. (2020) · Cell Death and Disease · doi:10.1038/s41419-020-2405-4 · Cited by 54 · see citing works
Emerging Roles of RAD52 in Genome Maintenance
Jalan, M., Olsen, K. S., & Powell, S. N. (2019) · Cancers · doi:10.3390/cancers11071038 · Cited by 55 · see citing works
“BRCA1 is predominately involved in the resection step of HR, while BRCA2 mediates removal of RPA and loading of RAD51; however, recent work has shown that BRCA1 may also have a function in the later steps of HR [3,5,6].”
BackgroundLi, Q., Saito, T. T., Deshong, A. J., Martínez García, M., Nadarajan, S., Lawrence, K. S., Checchi, P. M., Colaiácovo, M. P., & Engebrecht, J. (2018) · PLoS Genetics · doi:10.1371/journal.pgen.1007701 · Cited by 48 · see citing works
“However, recent biochemical analyses using purified proteins found that BRCA1 is not required for RAD51 assembly on RPA coated single stranded DNA and instead promotes DNA strand invasion [94].”
BackgroundThe role of ubiquitination in health and disease
Liao, Y., Zhang, W., Liu, Y., Zhu, C., & Zou, Z. (2024) · MedComm · doi:10.1002/mco2.736 · Cited by 67 · see citing works
Crucial roles of the BRCA1-BARD1 E3 ubiquitin ligase activity in homology-directed DNA repair
Wang, M., Li, W., Tomimatsu, N., Yu, C. H., Ji, J., Alejo, S., Witus, S. R., Alimbetov, D. S., Fitzgerald, O. R., Wu, B., et al. (2023) · Molecular Cell · doi:10.1016/j.molcel.2023.09.015 · Cited by 50 · see citing works
Self-citationKLF5 Promotes Tumor Progression and Parp Inhibitor Resistance in Ovarian Cancer
Wu, Y., Chen, S., Shao, Y. W., Su, Y., Li, Q., Wu, J., Zhu, J., Wen, H., Huang, Y., Zheng, Z., et al. (2023) · Advanced Science · doi:10.1002/advs.202304638 · Cited by 48 · see citing works
Self-citationSun, H., Zhou, R., Zheng, Y., Wen, Z., Zhang, D., Zeng, D., Wu, J., Huang, Z., Rong, X., Huang, N., et al. (2021) · Oncogene · doi:10.1038/s41388-021-01932-0 · Cited by 43 · see citing works
Elaimy, A. L., Amante, J. J., Zhu, L. J., et al. (2019) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1821194116 · Cited by 52 · see citing works
“Given that BRCA1 is required for Rad51-mediated HR (46), we hypothesized that YAP/TAZ should not affect DNA damage in BRCA1 mutant cells.”
BackgroundMendez‐Dorantes, C., Bhargava, R., & Stark, J. M. (2018) · Genes & Development · doi:10.1101/gad.311084.117 · Cited by 48 · see citing works
“BRCA1 also has been implicated recently in directly promoting RAD51mediated strand exchange (Zhao et al. 2017).”
BackgroundZhang, S., Yuan, H., Guo, Y., Wang, K., Wang, X., & Guo, Z. (2018) · Chemical Communications · doi:10.1039/c8cc06576d · Cited by 51 · see citing works
Zhang, S., Cao, M., Yan, S., et al. (2022) · International Journal of Biological Sciences · doi:10.7150/ijbs.71283 · Cited by 49 · see citing works
“BRCA1 promotes the recruitment of the recombinational repair protein RAD51 to damage sites [34].”
BackgroundBGL3 lncRNA mediates retention of the BRCA1/BARD1 complex at DNA damage sites
Hu, Z., Mi, S., Zhao, T. S., Peng, C., Peng, Y., Chen, L., Zhu, W., Yao, Y., Song, Q., Li, X., et al. (2020) · The EMBO Journal · doi:10.15252/embj.2019104133 · Cited by 50 · see citing works
“Reporter assays were performed as described previously (Zhao et al , 2017).”
InfluentialPromotion of DNA end resection by BRCA1–BARD1 in homologous recombination
Salunkhe, S. J., Daley, J. M., Kaur, H., Tomimatsu, N., Xue, C., Raina, V. B., Jasper, A. M., Rogers, C. M., Li, W., Zhou, S., et al. (2024) · Nature · doi:10.1038/s41586-024-07910-2 · Cited by 48 · see citing works
“8).”
InfluentialSelf-citationA Structural Guide to the Bloom Syndrome Complex
Bythell‐Douglas, R., & Deans, A. J. (2020) · Structure · doi:10.1016/j.str.2020.11.020 · Cited by 42 · see citing works
Untangling the crosstalk between BRCA1 and R-loops during DNA repair
Alonso, M. S. M., & Noordermeer, S. M. (2021) · Nucleic Acids Research · doi:10.1093/nar/gkab178 · Cited by 45 · see citing works
“The Sung laboratory described the biochemistry of this complex, identifying mutations that perturbed the interaction with RAD51 affecting the formation of the D-loop and DSB repair by HR (14).”
BackgroundPositive and negative regulators of RAD51/DMC1 in homologous recombination and DNA replication
Ito, M., Fujita, Y., & Shinohara, A. (2023) · DNA repair · doi:10.1016/j.dnarep.2023.103613 · Cited by 40 · see citing works
Zhang, X., Ma, D., Xuan, B., Shi, D., He, J., Yu, M., Xiong, H., Ma, Y., Shen, C., Guo, F., et al. (2023) · Oncogene · doi:10.1038/s41388-023-02657-y · Cited by 45 · see citing works
“Since DNA damage repair mainly includes non-homologous end joining (NHEJ) and homologous recombination (HR) repair [31], we next explored the correlation of the two pathways with CACClnc in CRC cells.”
BackgroundXu, Z., Li, X., Li, H., Nie, C., Liu, W., Li, S., Liu, Z., Wang, W., & Wang, J. (2020) · Oncogene · doi:10.1038/s41388-020-01482-x · Cited by 45 · see citing works
Self-citationDNA double-strand break repair: Putting zinc fingers on the sore spot
Singh, J. K., & van Attikum, H. (2020) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2020.09.003 · Cited by 44 · see citing works
Perkail, S., Andricovich, J., Yan, K., & Tzatsos, A. (2020) · Nature Communications · doi:10.1038/s41467-020-16589-8 · Cited by 39 · see citing works
Dunmore, B. J., Jones, R. J., Toshner, M. R., Upton, P. D., & Morrell, N. W. (2020) · Cardiovascular Research · doi:10.1093/cvr/cvaa350 · Cited by 42 · see citing works
“However, these may become impaired during chronic exposure as failure in DNA damage repair can lead to mutations and chromosomal rearrangements.77 PAECs of vascular lesions observed in PAH patients have exaggerated mutations and microsatellite instability in genes Therapies targeting BMPR2 and BMP signalling 2313 D ow…”
BackgroundTRIM66 reads unmodified H3R2K4 and H3K56ac to respond to DNA damage in embryonic stem cells
Chen, J., Wang, Z., Guo, X., Li, F., Wei, Q., Chen, X., Gong, D., Xu, Y., Chen, W., Liu, Y., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-12126-4 · Cited by 40 · see citing works
Self-citationChen, D., Gervai, J. Z., Póti, Á., Németh, E., Szeltner, Z., Szikriszt, B., Gyüre, Z., Zámborszky, J., Ceccon, M., di Fagagna, F. D., et al. (2022) · Nature Communications · doi:10.1038/s41467-021-27872-7 · Cited by 45 · see citing works
EXO1 protects BRCA1-deficient cells against toxic DNA lesions
van de Kooij, B., Schreuder, A., Pavani, R., Garzero, V., Uruci, S., Wendel, T. J., van Hoeck, A., Alonso, M. S. M., Everts, M., Koerse, D., et al. (2024) · Molecular Cell · doi:10.1016/j.molcel.2023.12.039 · Cited by 46 · see citing works
Huang, W., Han, Z., Sun, Z., et al. (2022) · Cell Death and Disease · doi:10.1038/s41419-022-05118-8 · Cited by 43 · see citing works
“In S-G2 stage, ATR and CHK1 control the G2/M checkpoint thereby opposes the NHEJ and enhance the errorfree HR basing on the template of intact sister chromatid [17].”
BackgroundThe microproteome of cancer: From invisibility to relevance
Merino-Valverde, I., Greco, E., & Abad, M. (2020) · Experimental Cell Research · doi:10.1016/j.yexcr.2020.111997 · Cited by 40 · see citing works
BRCA1 and homologous recombination: implications from mouse embryonic development
Liu, Y., & Lu, L. (2020) · Cell & Bioscience · doi:10.1186/s13578-020-00412-4 · Cited by 41 · see citing works
Self-citationHomologous Recombination as a Fundamental Genome Surveillance Mechanism during DNA Replication
Spies, J., Polášek-Sedláčková, H., Lukas, J., & Somyajit, K. (2021) · Genes · doi:10.3390/genes12121960 · Cited by 43 · see citing works
Yang, Y., Mai, Z., Zhang, Y., Yu, Z., Li, W., Zhang, Y., Li, F., Timashev, P. S., Luan, P., Luo, D., et al. (2023) · ACS Nano · doi:10.1021/acsnano.2c09342 · Cited by 39 · see citing works
Wanderley, C. W. S., Corrêa, T. S., Scaranti, M., Cunha, F. Q., & Barroso‐Sousa, R. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.816642 · Cited by 39 · see citing works
“Breast cancer susceptibility genes 1 and 2 (BRCA1 and BRCA2) enable DNA repair protein RAD51 homolog 1 (RAD51) recombinase to displace RPA and stabilize RAD51-single-stranded DNA filaments (20, 23).”
Backgroundvan Wijk, L. M., Nilas, A. B., Vrieling, H., & Vreeswijk, M. P. G. (2021) · Expert Review of Molecular Diagnostics · doi:10.1080/14737159.2022.2020102 · Cited by 36 · see citing works
“In a still poorly understood fashion, strand invasion and the formation of Holliday junctions occurs, a process that is promoted by the BRCA1-BARD1 complex, and DSBs are error-free repaired using the homologous sequence of the sister chromatid as template for DNA synthesis (Figure 1A) [9,13].”
Background53BP1 loss rescues embryonic lethality but not genomic instability of BRCA1 total knockout mice
Chen, J., Li, P., Song, L., Bai, L., Huen, M. S. Y., Liu, Y., & Lu, L. (2020) · Cell Death and Differentiation · doi:10.1038/s41418-020-0521-4 · Cited by 38 · see citing works
Self-citationWillis, N. A., Panday, A., Duffey, E. E., & Scully, R. (2018) · PLoS Genetics · doi:10.1371/journal.pgen.1007486 · Cited by 29 · see citing works
Ito, M., Furukohri, A., Matsuzaki, K., Fujita, Y., Toyoda, A., & Shinohara, A. (2023) · Nature Communications · doi:10.1038/s41467-023-42576-w · Cited by 31 · see citing works
Lavoro, A., Scalisi, A., Candido, S., Zanghì, G., Rizzo, R., Gattuso, G., Caruso, G., Libra, M., & Falzone, L. (2022) · International Journal of Oncology · doi:10.3892/ijo.2022.5349 · Cited by 35 · see citing works
BRCA1/2 Serves as a Biomarker for Poor Prognosis in Breast Carcinoma
Jin, T. Y., Park, K. S., Nam, S. E., Yoo, Y. B., Park, W. S., & Yun, I. J. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23073754 · Cited by 35 · see citing works
“which will especially influence those situated in exon-encoding domains that interact with BRCA1-binding proteins, such as BARD1, BRIP1 and PALB2, which (along with RAD51C, RAD51D and possibly RAP80 and FAM175A, encoding Abraxas) are also breast and/or ovarian cancer-susceptibility genes [34,35].”
BackgroundTranscription-coupled DNA double-strand break repair
Guha, S., & Bhaumik, S. R. (2021) · DNA repair · doi:10.1016/j.dnarep.2021.103211 · Cited by 32 · see citing works
Mechanism and significance of chromosome damage repair by homologous recombination
Kawale, A. S., & Sung, P. (2020) · Essays in Biochemistry · doi:10.1042/ebc20190093 · Cited by 33 · see citing works
Self-citationRoles of NRF2 in DNA damage repair
Li, J., Xu, C. S., & Liu, Q. (2023) · Cellular Oncology · doi:10.1007/s13402-023-00834-5 · Cited by 36 · see citing works
Selemenakis, P., Sharma, N., Uhrig, M. E., Katz, J., Kwon, Y., Sung, P., & Wiese, C. (2022) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2022.866601 · Cited by 29 · see citing works
“In contrast, RAD54L belongs to the SWI2/SNF2 protein family of DNA-dependent ATPases (Flaus et al., 2006) and utilizes its ATPase activity to convert the synaptic complex into a D-loop (Sigurdsson et al., 2002; Crickard et al., 2020), and to translocate along the DNA (Van Komen et al., 2000; Ristic et al., 2001) where…”
InfluentialSelf-citationHan, Y., Hu, X., Yun, X., Liu, J., Yang, J., Tian, Z., Zhang, X., Zhang, Y., & Wang, X. (2021) · Cell Death and Disease · doi:10.1038/s41419-021-04368-2 · Cited by 29 · see citing works
“RAD51 protein is involved in DNA damage, cell cycle, apoptosis regulation [16], and chemotherapy resistance [17].”
BackgroundBRCA1 and BRCA2 Tumor Suppressor Function in Meiosis
Li, Q., & Engebrecht, J. (2021) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2021.668309 · Cited by 35 · see citing works
Ma, Y., Mu, X., Gao, R., Zhang, Y., Geng, Y., Chen, X., Yin, X. H., Li, F., & He, J. (2023) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2023.131540 · Cited by 35 · see citing works
Self-citation
- Authors
- Zhao, W., Steinfeld, J. B., Liang, F., Chen, X., Maranon, D. G., Jian Ma, C., Kwon, Y., Rao, T., Wang, W., Sheng, C., Song, X., Deng, Y., Jimenez-Sainz, J., Lu, L., Jensen, R. B., Xiong, Y., Kupfer, G. M., Wiese, C., Greene, E. C., & Sung, P.
- Affiliations
- Yale University (US)
- Columbia University (US)
- Colorado State University (US)
- Corresponding author
- Zhao, Weixing
- Greene, Eric C.
- Sung, Patrick
- ORCID
- Venue
- Nature
- Published
- 2017-10
- Volume
- 550
- Issue
- 7676
- Pages
- 360-365
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- PMC
- PMC5800781
- OpenAlex
- W2763077107
- Cited by
- 393
- References
- 56
- Citations by year
- 2026: 41 · 2025: 38 · 2024: 42 · 2023: 50 · 2022: 44 · 2021: 56 · 2020: 61 · 2019: 36 · 2018: 22 · 2017: 2 · 2012: 1
- FWCI
- 13.45
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- Funders
- University of Pennsylvania Health System
- Abramson Cancer Center
- National Institutes of Health (UL1TR001863)
- National Cancer Institute (F31CA210663, R01CA215990, R01CA220123, R01CA168635, P01CA092584)
- National Institute of General Medical Sciences (R35GM118026)
- National Institute of Environmental Health Sciences (R01ES021454, R56ES021454, R01ES007061)
- National Center for Advancing Translational Sciences
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › BRCA gene mutations in cancer
- Health Sciences › Medicine › Oncology › PARP inhibition in cancer therapy
- Keywords
- RAD51, homologous recombination, DNA double-strand break repair, synaptic complex, BRCA1, BARD1, single-stranded DNA, hereditary breast cancer, cancer therapy targets
- MeSH terms
- Fanconi Anemia Complementation Group N Protein, Amino Acid Sequence, Humans, Mutation, Protein Binding, Sequence Homology, Nucleic Acid, Templates, Genetic, BRCA1 Protein, Genes, BRCA1, Base Pairing, Chromosome Pairing, Genes, BRCA2, BRCA2 Protein, Tumor Suppressor Proteins, Ubiquitin-Protein Ligases, Multiprotein Complexes, Rad51 Recombinase, Recombinational DNA Repair
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-01.
Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-01.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review