DNA-free genome editing in plants with preassembled CRISPR-Cas9 ribonucleoproteins
Abstract
Editing plant genomes without introducing foreign DNA into cells may alleviate regulatory concerns related to genetically modified plants. We transfected preassembled complexes of purified Cas9 protein and guide RNA into plant protoplasts of Arabidopsis thaliana, tobacco, lettuce and rice and achieved targeted mutagenesis in regenerated plants at frequencies of up to 46%. The targeted sites contained germline-transmissible small insertions or deletions that are indistinguishable from naturally occurring genetic variation.
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Effective delivery of Cas9/sgRNA ribonucleoprotein complexes (RNPs) can be difficult due to the large size of Cas9 protein (~160 kD), the positive charge of Cas9 protein and the strong negative charge of sgRNA.
“However, due to the large size of Cas9 protein (~ 160 kD), the positive charge of Cas9 protein and the strong negative charge of sgRNA, the effective delivery of Cas9/sgRNA ribonucleoprotein complexes (RNPs) can be difficult [88–91].”
From Non-viral delivery systems for CRISPR/Cas9-based genome editing: challenges and opportunities (2018) · cites this paper as [90]
Cites
Nutrient requirements of suspension cultures of soybean root cells
Gamborg, O. L., Miller, R. A., & Ojima, K. (1968) · Experimental Cell Research · doi:10.1016/0014-4827(68)90403-5 · Cited by 9,455 · see citing works
Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis
Yoo, S.-D., Cho, Y.-H., & Sheen, J. (2007) · Nature Protocols · doi:10.1038/nprot.2007.199 · Cited by 5,104 · see citing works
Bae, S., Park, J., & Kim, J.-S. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu048 · Cited by 2,339 · see citing works
Self-citationTargeted genome modification of crop plants using a CRISPR-Cas system
Shan, Q., Wang, Y., Li, J., Zhang, Y., Chen, K., Liang, Z., Zhang, K., Liu, J., Xi, J., Qiu, J., et al. (2013) · Nature Biotechnology · doi:10.1038/nbt.2650 · Cited by 1,965 · see citing works
Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease
Cho, S. W., Kim, S., Kim, J. M., & Kim, J.-S. (2013) · Nature Biotechnology · doi:10.1038/nbt.2507 · Cited by 1,863 · see citing works
Self-citationKim, S., Kim, D., Cho, S. W., Kim, J., & Kim, J.-S. (2014) · Genome Research · doi:10.1101/gr.171322.113 · Cited by 1,856 · see citing works
Self-citationLi, J., Norville, J. E., Aach, J., McCormack, M., Zhang, D., Bush, J., Church, G. M., & Sheen, J. (2013) · Nature Biotechnology · doi:10.1038/nbt.2654 · Cited by 1,499 · see citing works
Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases
Cho, S. W., Kim, S., Kim, Y., Kweon, J., Kim, H. S., Bae, S., & Kim, J.-S. (2014) · Genome Research · doi:10.1101/gr.162339.113 · Cited by 1,356 · see citing works
Self-citationA guide to genome engineering with programmable nucleases
Kim, S., & Kim, J. (2014) · Nature Reviews Genetics · doi:10.1038/nrg3686 · Cited by 1,162 · see citing works
Self-citationTargeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease
Nekrasov, V., Staskawicz, B. J., Weigel, D., Jones, J. D. G., & Kamoun, S. (2013) · Nature Biotechnology · doi:10.1038/nbt.2655 · Cited by 1,123 · see citing works
Zhang, Y., Su, J., Duan, S., Ao, Y., Dai, J., Liu, J., Wang, P., Li, Y., Liu, B., Feng, D., et al. (2011) · Plant Methods · doi:10.1186/1746-4811-7-30 · Cited by 1,010 · see citing works
Digenome-seq: Genome-wide profiling of CRISPR-cas9 off-target effects in human cells
Kim, D., Bae, S., Park, J., Kim, E., Kim, S., Yu, H. R., Hwang, J., Kim, J.-I., & Kim, J.-S. (2015) · Nature Methods · doi:10.1038/nmeth.3284 · Cited by 992 · see citing works
Self-citationThe isolation, culture and regeneration of Petunia leaf protoplasts
Frearson, E. M., Power, J. B., & Cocking, E. C. (1973) · Developmental Biology · doi:10.1016/0012-1606(73)90169-3 · Cited by 655 · see citing works
Targeted genome editing in human cells with zinc finger nucleases constructed via modular assembly
Kim, H. J., Lee, H. J., Kim, H., Cho, S. W., & Kim, J.-S. (2009) · Genome Research · doi:10.1101/gr.089417.108 · Cited by 466 · see citing works
Self-citationMenczel, L., Nagy, F., Kiss, Z. R., et al. (1981) · Theoretical and Applied Genetics · doi:10.1007/bf00264975 · Cited by 373 · see citing works
Highly efficient gene knockout in mice and zebrafish with RNA-guided endonucleasesPreprint
Sung, Y. H., Kim, J. M., Kim, H.-T., Lee, J., Jeon, J., Jin, Y., Choi, J.-H., Ban, Y. H., Ha, S., Kim, C., et al. (2013) · Genome Research · doi:10.1101/gr.163394.113 · Cited by 281 · see citing works
Self-citationTargeted chromosomal deletions in human cells using zinc finger nucleasesPreprint
Lee, H. J., Kim, E., & Kim, J. (2009) · Genome Research · doi:10.1101/gr.099747.109 · Cited by 250 · see citing works
Self-citationCho, S. W., Lee, J., Carroll, D., Kim, J., & Lee, J. (2013) · Genetics · doi:10.1534/genetics.113.155853 · Cited by 248 · see citing works
Self-citationRegulatory uncertainty over genome editing
Jones, H. D. (2015) · Nature Plants · doi:10.1038/nplants.2014.11 · Cited by 215 · see citing works
Choe, S., Schmitz, R. J., Fujioka, S., et al. (2002) · PLANT PHYSIOLOGY · doi:10.1104/pp.010496 · Cited by 181 · see citing works
Self-citationStable Plastid Transformation in Lettuce (Lactuca sativa L.)
Lelivelt, C. L. C., McCabe, M. S., Newell, C. A., et al. (2005) · Plant Molecular Biology · doi:10.1007/s11103-005-7704-8 · Cited by 158 · see citing works
Genotyping with CRISPR-Cas-derived RNA-guided endonucleases
Kim, J. M., Kim, D., Kim, S., & Kim, J. (2014) · Nature Communications · doi:10.1038/ncomms4157 · Cited by 129 · see citing works
Self-citationNon-GMO genetically edited crop plants
Kanchiswamy, C. N., Malnoy, M., Velasco, R., Kim, J., & Viola, R. (2015) · Trends in biotechnology · doi:10.1016/j.tibtech.2015.04.002 · Cited by 73 · see citing works
Self-citation
Flagged first, then by citations
Cited by
Sorted by citations
Applications of CRISPR–Cas in agriculture and plant biotechnology
Zhu, H., Li, C., & Gao, C. (2020) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-020-00288-9 · Cited by 870 · see citing works
Wang, H.-X., Li, M., Lee, C. M., Chakraborty, S., Kim, H.-W., Bao, G., & Leong, K. W. (2017) · Chemical Reviews · doi:10.1021/acs.chemrev.6b00799 · Cited by 560 · see citing works
Self-citationCRISPR/Cas system: recent advances and future prospects for genome editing
Manghwar, H., Lindsey, K., Zhang, X., & Jin, S. (2019) · Trends in Plant Science · doi:10.1016/j.tplants.2019.09.006 · Cited by 529 · see citing works
“) [68], Medicago truncatula [69],Marchantia polymorpha [70], tobacco (Nicotiana tabacum L.”
BackgroundNon-viral delivery systems for CRISPR/Cas9-based genome editing: challenges and opportunities
Li, L., Hu, S., & Chen, X. (2018) · Biomaterials · doi:10.1016/j.biomaterials.2018.04.031 · Cited by 415 · see citing works
Precise plant genome editing using base editors and prime editors
Molla, K. A., Sretenovic, S., Bansal, K. C., & Qi, Y. (2021) · Nature Plants · doi:10.1038/s41477-021-00991-1 · Cited by 387 · see citing works
CRISPR/Cas: A powerful tool for gene function study and crop improvement
Zhang, D., Zhang, Z., Unver, T., & Zhang, B. (2021) · Journal of Advanced Research · doi:10.1016/j.jare.2020.10.003 · Cited by 373 · see citing works
Staahl, B. T., Benekareddy, M., Coulon-Bainier, C., Banfal, A. A., Floor, S. N., Sabo, J. K., Urnes, C., Munares, G. A., Ghosh, A., & Doudna, J. A. (2017) · Nature Biotechnology · doi:10.1038/nbt.3806 · Cited by 355 · see citing works
Haque, E., Taniguchi, H., Hassan, M. M., Bhowmik, P., Karim, M. R., Śmiech, M., Zhao, K., Rahman, M., & Islam, T. (2018) · Frontiers in Plant Science · doi:10.3389/fpls.2018.00617 · Cited by 236 · see citing works
Subburaj, S., Chung, S. J., Lee, C., Ryu, S.-M., Kim, D. H., Kim, J.-S., Bae, S., & Lee, G.-J. (2016) · Plant Cell Reports · doi:10.1007/s00299-016-1937-7 · Cited by 237 · see citing works
Self-citationShen, C., Que, Z., Xia, Y., Tang, N., Li, D., He, R., & Cao, M. (2017) · Journal of Plant Biology · doi:10.1007/s12374-016-0400-1 · Cited by 234 · see citing works
CRISPR RNAs Trigger Innate Immune Responses in Human Cells
Kim, S., Koo, T., Jee, H.-G., Cho, H.-Y., Lee, G., Lim, D.-G., Shin, H. S., & Kim, J.-S. (2018) · Genome Research · doi:10.1101/gr.231936.117 · Cited by 222 · see citing works
Self-citationFirst report of CRISPR/cas9 mediated dna-free editing of 4cl and rve7 genes in chickpea protoplasts
Badhan, S., Ball, A. S., & Mantri, N. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22010396 · Cited by 193 · see citing works
The CRISPR/Cas9 system and its applications in crop genome editing
Bao, A., Burritt, D. J., Chen, H., Zhou, X., Cao, D., & Tran, L.-S. P. (2019) · Critical Reviews in Biotechnology · doi:10.1080/07388551.2018.1554621 · Cited by 185 · see citing works
Current status and perspectives of genome editing technology for microalgae
Jeon, S., Lim, J.-M., Lee, H.-G., Shin, S.-E., Kang, N. K., Park, Y.-I., Oh, H.-M., Jeong, W.-J., Jeong, B.-R., & Chang, Y. K. (2017) · Biotechnology for Biofuels · doi:10.1186/s13068-017-0957-z · Cited by 154 · see citing works
Modrzejewski, D., Hartung, F., Lehnert, H., Sprink, T., Kohl, C., Keilwagen, J., & Wilhelm, R. (2020) · Frontiers in Plant Science · doi:10.3389/fpls.2020.574959 · Cited by 151 · see citing works
Detection and Identification of Genome Editing in Plants: Challenges and Opportunities
Grohmann, L., Keilwagen, J., Duensing, N., Dagand, E., Hartung, F., Wilhelm, R., Bendiek, J., & Sprink, T. (2019) · Frontiers in Plant Science · doi:10.3389/fpls.2019.00236 · Cited by 135 · see citing works
The Solanum tuberosum GBSSI gene: a target for assessing gene and base editing in tetraploid potato
Veillet, F., Chauvin, L., Kermarrec, M.-P., Sevestre, F., Merrer, M., Terret, Z., Szydlowski, N., Devaux, P., Gallois, J.-L., & Chauvin, J.-E. (2019) · Plant Cell Reports · doi:10.1007/s00299-019-02426-w · Cited by 124 · see citing works
Exosome/Liposome-like Nanoparticles: New Carriers for CRISPR Genome Editing in Plants
Alghuthaymi, M. A., Ahmad, A., Khan, Z., Khan, S. H., Ahmed, F. K., Faiz, S., Nepovimova, E., Kuča, K., & Abd-Elsalam, K. A. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22147456 · Cited by 83 · see citing works
“quency for Lactuca sativa mutants was up to 46 percent [27].”
BackgroundNew traits in crops produced by genome editing techniques based on deletions
van de Wiel, C. C. M., Schaart, J. G., Lotz, L. A. P., & Smulders, M. J. M. (2017) · Plant Biotechnology Reports · doi:10.1007/s11816-017-0425-z · Cited by 80 · see citing works
Genetic Variation and Unintended Risk in the Context of Old and New Breeding Techniques
Singer, S. D., Laurie, J. D., Bilichak, A., Kumar, S., & Singh, J. (2021) · Critical Reviews in Plant Sciences · doi:10.1080/07352689.2021.1883826 · Cited by 77 · see citing works
Chennakesavulu, K., Singh, H., Trivedi, P. K., Jain, M., & Yadav, S. R. (2022) · Plant Cell Reports · doi:10.1007/s00299-021-02681-w · Cited by 58 · see citing works
Concerns regarding ‘off-target’activity of genome editing endonucleases
Kadam, U. S., Shelake, R. M., Chavhan, R. L., & Suprasanna, P. (2018) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2018.03.027 · Cited by 47 · see citing works
Tariq, A., Mushtaq, M., Yaqoob, H., Bhat, B. A., Zargar, S. M., Raza, A., Ali, S., Charagh, S., Mubarik, M. S., Zaman, Q. U., et al. (2023) · GM Crops & Food · doi:10.1080/21645698.2023.2219111 · Cited by 45 · see citing works
- Authors
- Woo, J. W., Kim, J., Kwon, S. I., Corvalán, C., Cho, S. W., Kim, H., Kim, S.-G., Kim, S.-T., Choe, S., & Kim, J.-S.
- Affiliations
- Advanced Institute of Convergence Technology (KR)
- Seoul National University (KR)
- Institute for Basic Science (KR)
- Corresponding author
- Choe, Sunghwa
- Kim, Jin-Soo
- Venue
- Nature Biotechnology
- Published
- 2015-10-19
- Volume
- 33
- Issue
- 11
- Pages
- 1162-1164
- ISSN
- 0733-222X (ISSN-L)
- 1087-0156
- 1546-1696
- OpenAlex
- W1787401975
- Cited by
- 1,219
- References
- 23
- Citations by year
- 2026: 67 · 2025: 89 · 2024: 101 · 2023: 116 · 2022: 140 · 2021: 175 · 2020: 128 · 2019: 127 · 2018: 90 · 2017: 94 · 2016: 84 · 2015: 8
- FWCI
- 39.93
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Biotechnology (publishedVersion)
- PubMed (publishedVersion)
- Seoul National University Open Repository (Seoul National University) (submittedVersion)
- Scholarworks@UNIST (Ulsan National Institute of Science and Technology) (submittedVersion)
- Funders
- Institute for Basic Science
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › CRISPR and Genetic Engineering
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biotechnology › Transgenic Plants and Applications
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Genetically Modified Organisms Research
- Keywords
- CRISPR/Cas9, DNA-free genome editing, Cas9, guide RNA, targeted mutagenesis, germline transmission, Arabidopsis thaliana, tobacco, lettuce, rice, transgenic plants, regulatory concerns
- MeSH terms
- Base Sequence, Genetic Engineering, Molecular Sequence Data, Plant Proteins, Protoplasts, Ribonucleoproteins, Oryza, Nicotiana, Arabidopsis, Genome, Plant, Plants, Genetically Modified, Gene Knockout Techniques, CRISPR-Cas Systems
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