The DOI matches its Crossref record; 36 of the 36 references it cites were found in a registry or an index.
Resolution doubling in live, multicellular organisms via multifocal structured illumination microscopy
Open accessAbstract
We demonstrate three-dimensional (3D) super-resolution in live multicellular organisms using structured illumination microscopy (SIM). Sparse multifocal illumination patterns generated by a digital micromirror device (DMD) allowed us to physically reject out-of-focus light, enabling 3D subdiffractive imaging in samples eightfold thicker than had been previously imaged with SIM. We imaged samples at one 2D image per second, at resolutions as low as 145 nm laterally and 400 nm axially. In addition to dual-labeled, whole fixed cells, we imaged GFP-labeled microtubules in live transgenic zebrafish embryos at depths >45 μm. We captured dynamic changes in the zebrafish lateral line primordium and observed interactions between myosin IIA and F-actin in cells encapsulated in collagen gels, obtaining two-color 4D super-resolution data sets spanning tens of time points and minutes without apparent phototoxicity. Our method uses commercially available parts and open-source software and is simpler than existing SIM implementations, allowing easy integration with wide-field microscopes.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Matrix elasticity directs stem cell lineage specification
Engler, A. J., Sen, S., Sweeney, H. L., & Discher, D. E. (2006) · Cell · doi:10.1016/j.cell.2006.06.044 · Cited by 13,915
Imaging Intracellular Fluorescent Proteins at Nanometer Resolution
Betzig, E., Patterson, G. H., Sougrat, R., Lindwasser, O. W., Olenych, S., Bonifacino, J. S., Davidson, M. W., Lippincott-Schwartz, J., & Hess, H. F. (2006) · Science · doi:10.1126/science.1127344 · Cited by 8,772
Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)
Rust, M. J., Bates, M., & Zhuang, X. (2006) · Nature Methods · doi:10.1038/nmeth929 · Cited by 8,078
Hell, S. W., & Wichmann, J. (1994) · Optics Letters · doi:10.1364/ol.19.000780 · Cited by 6,065
Tensional homeostasis and the malignant phenotype
Paszek, M. J., Zahir, N., Johnson, K. R., Lakins, J. N., Rozenberg, G. I., Gefen, A., Reinhart-King, C. A., Margulies, S. S., Dembo, M., Boettiger, D., et al. (2005) · Cancer Cell · doi:10.1016/j.ccr.2005.08.010 · Cited by 3,941
Gustafsson, M. G. L. (2000) · Journal of Microscopy · doi:10.1046/j.1365-2818.2000.00710.x · Cited by 3,786
Ultra-High Resolution Imaging by Fluorescence Photoactivation Localization Microscopy
Hess, S. T., Girirajan, T. P. K., & Mason, M. D. (2006) · Biophysical Journal · doi:10.1529/biophysj.106.091116 · Cited by 3,605
Python for scientific computing
Oliphant, T. E. (2007) · Computing in Science & Engineering · doi:10.1109/mcse.2007.58 · Cited by 3,303
Hell, S. W. (2007) · Science · doi:10.1126/science.1137395 · Cited by 2,967
The third dimension bridges the gap between cell culture and live tissue
Pampaloni, F., Reynaud, E. G., & Stelzer, E. H. K. (2007) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2236 · Cited by 2,817
Filopodia: molecular architecture and cellular functions
Mattila, P. K., & Lappalainen, P. (2008) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2406 · Cited by 1,719
Gustafsson, M. G. L., Shao, L., Carlton, P. M., Wang, C. J. R., Golubovskaya, I. N., Cande, W. Z., Agard, D. A., & Sedat, J. W. (2008) · Biophysical Journal · doi:10.1529/biophysj.107.120345 · Cited by 1,557
Nelson, C. M., & Bissell, M. J. (2006) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev.cellbio.22.010305.104315 · Cited by 1,130
Being Sensitive to Uncertainty
Arriola, L. M., & Hyman, J. M. (2007) · Computing in Science & Engineering · doi:10.1109/mcse.2007.27 · Cited by 953
Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics
Shroff, H., Galbraith, C. G., Galbraith, J. A., & Betzig, E. (2008) · Nature Methods · doi:10.1038/nmeth.1202 · Cited by 873
Self-citationFast, three-dimensional super-resolution imaging of live cells
Jones, S. A., Shim, S.-H., He, J., & Zhuang, X. (2011) · Nature Methods · doi:10.1038/nmeth.1605 · Cited by 752
Super-resolution video microscopy of live cells by structured illumination
Kner, P., Chhun, B. B., Griffis, E. R., Winoto, L., & Gustafsson, M. G. L. (2009) · Nature Methods · doi:10.1038/nmeth.1324 · Cited by 734
Whole-cell 3D STORM reveals interactions between cellular structures with nanometer-scale resolution
Huang, B., Jones, S. A., Brandenburg, B., & Zhuang, X. (2008) · Nature Methods · doi:10.1038/nmeth.1274 · Cited by 609
Laterally modulated excitation microscopy: improvement of resolution by using a diffraction grating:
Heintzmann, R., & Cremer, C. G. (1999) · SPIE Proceedings · doi:10.1117/12.336833 · Cited by 589
Pasapera, A. M., Schneider, I. C., Rericha, E., Schlaepfer, D. D., & Waterman, C. M. (2010) · Journal of Cell Biology · doi:10.1083/jcb.200906012 · Cited by 572
Super-resolution 3D microscopy of live whole cells using structured illumination
Shao, L., Kner, P., Rego, E. H., & Gustafsson, M. G. L. (2011) · Nature Methods · doi:10.1038/nmeth.1734 · Cited by 533
Macromolecular-scale resolution in biological fluorescence microscopy
Donnert, G., Keller, J., Medda, R., Andrei, M. A., Rizzoli, S. O., Lührmann, R., Jahn, R., Eggeling, C., & Hell, S. W. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0604965103 · Cited by 527
Müller, C. B., & Enderlein, J. (2010) · Physical Review Letters · doi:10.1103/physrevlett.104.198101 · Cited by 521
Diffraction-unlimited all-optical imaging and writing with a photochromic GFP
Grotjohann, T., Testa, I., Leutenegger, M., Bock, H., Urban, N. T., Lavoie-Cardinal, F., Willig, K. I., Eggeling, C., Jakobs, S., & Hell, S. W. (2011) · Nature · doi:10.1038/nature10497 · Cited by 501
Shroff, H., Galbraith, C. G., Galbraith, J. A., White, H., Gillette, J., Olenych, S., Davidson, M. W., & Betzig, E. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0710517105 · Cited by 498
Self-citationLive-cell 3D super-resolution imaging in thick biological samples
Cella Zanacchi, F., Lavagnino, Z., Perrone Donnorso, M., Del Bue, A., Furia, L., Faretta, M., & Diaspro, A. (2011) · Nature Methods · doi:10.1038/nmeth.1744 · Cited by 385
Westphal, V., Rizzoli, S. O., Lauterbach, M. A., Kamin, D., & Hell, S. W. (2009) · Advances in Imaging · doi:10.1364/ntm.2009.nma1 · Cited by 365
Nanoscopy in a living mouse brain
Berning, S., Willig, K. I., Steffens, H., Dibaj, P., & Hell, S. W. (2012) · Science · doi:10.1126/science.1215369 · Cited by 363
Extensions of DAMAS and Benefits and Limitations of Deconvolution in Beamforming
Dougherty, R. (2005) · 11th AIAA/CEAS Aeroacoustics Conference · doi:10.2514/6.2005-2961 · Cited by 337
Time-lapse two-color 3D imaging of live cells with doubled resolution using structured illumination
Fiolka, R., Shao, L., Rego, E. H., Davidson, M. W., & Gustafsson, M. G. L. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1119262109 · Cited by 333
Yi, J., Wu, X. S., Crites, T., & Hammer, J. A. (2012) · Molecular Biology of the Cell · doi:10.1091/mbc.e11-08-0731 · Cited by 266
Aman, A., & Piotrowski, T. (2008) · Developmental Cell · doi:10.1016/j.devcel.2008.10.002 · Cited by 249
Local Cortical Tension by Myosin II Guides 3D Endothelial Cell Branching
Fischer, R. S., Gardel, M., Ma, X., Adelstein, R. S., & Waterman, C. M. (2009) · Current Biology · doi:10.1016/j.cub.2008.12.045 · Cited by 189
Self-citationYork, A. G., Ghitani, A., Vaziri, A., Davidson, M. W., & Shroff, H. (2011) · Nature Methods · doi:10.1038/nmeth.1571 · Cited by 172
Self-citationBuilding the posterior lateral line system in zebrafish
Chitnis, A. B., Nogare, D. D., & Matsuda, M. (2011) · Developmental Neurobiology · doi:10.1002/dneu.20962 · Cited by 131
Self-citationNanoscopy in a Living Multicellular Organism Expressing GFP
Rankin, B. R., Moneron, G., Wurm, C. A., Nelson, J. C., Walter, A., Schwarzer, D., Schroeder, J., Colón‐Ramos, D. A., & Hell, S. W. (2011) · Biophysical Journal · doi:10.1016/j.bpj.2011.05.020 · Cited by 105
Cited by
Super-Resolution Structured Illumination Microscopy
Heintzmann, R., & Huser, T. (2017) · Chemical Reviews · doi:10.1021/acs.chemrev.7b00218 · Cited by 574
Faster, sharper, and deeper: structured illumination microscopy for biological imaging
Wu, Y., & Shroff, H. (2018) · Nature Methods · doi:10.1038/s41592-018-0211-z · Cited by 375
Self-citationNoninvasive Imaging beyond the Diffraction Limit of 3D Dynamics in Thickly Fluorescent Specimens
Gao, L., Shao, L., Higgins, C. D., Poulton, J. S., Peifer, M., Davidson, M. W., Wu, X., Goldstein, B., & Betzig, E. (2012) · Cell · doi:10.1016/j.cell.2012.10.008 · Cited by 320
Movement of accessible plasma membrane cholesterol by the GRAMD1 lipid transfer protein complex
Naito, T., Ercan, B., Krshnan, L., Triebl, A., Koh, D. H. Z., Wei, F.-Y., Tomizawa, K., Torta, F. T., Wenk, M. R., & Saheki, Y. (2019) · eLife · doi:10.7554/elife.51401 · Cited by 171
Live-cell imaging powered by computation
Shroff, H., Testa, I., Jug, F., & Manley, S. (2024) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-024-00702-6 · Cited by 75
Self-citation
Metadata
- Authors
- York, A. G., Parekh, S. H., Nogare, D. D., Fischer, R. S., Temprine, K., Mione, M., Chitnis, A. B., Combs, C. A., & Shroff, H.
- Venue
- Nature Methods
- Published
- 2012-05-13
- Volume
- 9
- Issue
- 7
- Pages
- 749-754
- ISSN
- 1548-7091 (ISSN-L)
- 1548-7105
- OpenAlex
- W2021248782
- Cited by
- 472
- References
- 36
- FWCI
- 12.79
- Type
- journal article
- Language
- en
- Open access
- green
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.