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Two-photon optogenetic toolbox for fast inhibition, excitation and bistable modulation
Open accessAbstract
Optogenetics with microbial opsin genes has enabled high-speed control of genetically specified cell populations in intact tissue. However, it remains a challenge to independently control subsets of cells within the genetically targeted population. Although spatially precise excitation of target molecules can be achieved using two-photon laser-scanning microscopy (TPLSM) hardware, the integration of two-photon excitation with optogenetics has thus far required specialized equipment or scanning and has not yet been widely adopted. Here we take a complementary approach, developing opsins with custom kinetic, expression and spectral properties uniquely suited to scan times typical of the raster approach that is ubiquitous in TPLSM laboratories. We use a range of culture, slice and mammalian in vivo preparations to demonstrate the versatility of this toolbox, and we quantitatively map parameter space for fast excitation, inhibition and bistable control. Together these advances may help enable broad adoption of integrated optogenetic and TPLSM technologies across experimental fields and systems.
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Citations
Cites
Two-photon laser scanning fluorescence microscopy
Denk, W., Strickler, J. H., & Webb, W. W. (1990) · Science · doi:10.1126/science.2321027 · Cited by 9,488
Millisecond-timescale, genetically targeted optical control of neural activity
Boyden, E. S., Zhang, F., Bamberg, E., Nagel, G., & Deisseroth, K. (2005) · Nature Neuroscience · doi:10.1038/nn1525 · Cited by 4,861
Self-citationDeep tissue two-photon microscopy
Helmchen, F., & Denk, W. (2005) · Nature Methods · doi:10.1038/nmeth818 · Cited by 4,153
Parvalbumin neurons and gamma rhythms enhance cortical circuit performance
Sohal, V. S., Zhang, F., Yizhar, O., & Deisseroth, K. (2009) · Nature · doi:10.1038/nature07991 · Cited by 2,606
Self-citationDriving fast-spiking cells induces gamma rhythm and controls sensory responses
Cardin, J. A., Carlén, M., Meletis, K., Knoblich, U., Zhang, F., Deisseroth, K., Tsai, L.-H., & Moore, C. I. (2009) · Nature · doi:10.1038/nature08002 · Cited by 2,603
Self-citationNeocortical excitation/inhibition balance in information processing and social dysfunction
Yizhar, O., Fenno, L. E., Prigge, M., Schneider, F., Davidson, T. J., O’Shea, D. J., Sohal, V. S., Goshen, I., Finkelstein, J., Paz, J. T., et al. (2011) · Nature · doi:10.1038/nature10360 · Cited by 2,454
Self-citationRegulation of parkinsonian motor behaviours by optogenetic control of basal ganglia circuitry
Kravitz, A. V., Freeze, B. S., Parker, P. R. L., Kay, K., Thwin, M. T., Deisseroth, K., & Kreitzer, A. C. (2010) · Nature · doi:10.1038/nature09159 · Cited by 1,885
Self-citationOptogenetics in neural systems
Yizhar, O., Fenno, L. E., Davidson, T. J., Mogri, M., & Deisseroth, K. (2011) · Neuron · doi:10.1016/j.neuron.2011.06.004 · Cited by 1,881
Self-citationMultimodal fast optical interrogation of neural circuitry
Zhang, F., Wang, L.-P., Brauner, M., Liewald, J. F., Kay, K., Watzke, N., Wood, P. G., Bamberg, E., Nagel, G., Gottschalk, A., et al. (2007) · Nature · doi:10.1038/nature05744 · Cited by 1,738
Self-citationOptogenetic stimulation of a hippocampal engram activates fear memory recall
Liu, X., Ramirez, S., Pang, P. T., Puryear, C. B., Govindarajan, A., Deisseroth, K., & Tonegawa, S. (2012) · Nature · doi:10.1038/nature11028 · Cited by 1,674
Self-citationOptical Deconstruction of Parkinsonian Neural Circuitry
Gradinaru, V., Mogri, M., Thompson, K. R., Henderson, J. M., & Deisseroth, K. (2009) · Science · doi:10.1126/science.1167093 · Cited by 1,526
Self-citationNeural substrates of awakening probed with optogenetic control of hypocretin neurons
Adamantidis, A. R., Zhang, F., Aravanis, A. M., Deisseroth, K., & de Lecea, L. (2007) · Nature · doi:10.1038/nature06310 · Cited by 1,341
Self-citationAmygdala circuitry mediating reversible and bidirectional control of anxiety
Tye, K. M., Prakash, R., Kim, S.-Y., Fenno, L. E., Grosenick, L., Zarabi, H., Thompson, K. R., Gradinaru, V., Ramakrishnan, C., & Deisseroth, K. (2011) · Nature · doi:10.1038/nature09820 · Cited by 1,289
Self-citationHigh-performance genetically targetable optical neural silencing by light-driven proton pumps
Chow, B. Y., Han, X., Dobry, A. S., Qian, X., Chuong, A. S., Li, M., Henninger, M. A., Belfort, G. M., Lin, Y., Monahan, P. E., et al. (2010) · Nature · doi:10.1038/nature08652 · Cited by 1,186
AGRP neurons are sufficient to orchestrate feeding behavior rapidly and without training
Aponte, Y., Atasoy, D., & Sternson, S. M. (2011) · Nature Neuroscience · doi:10.1038/nn.2739 · Cited by 1,157
Principles of two-photon excitation microscopy and its applications to neuroscience
Svoboda, K., & Yasuda, R. (2006) · Neuron · doi:10.1016/j.neuron.2006.05.019 · Cited by 1,027
Molecular and Cellular Approaches for Diversifying and Extending Optogenetics
Gradinaru, V., Zhang, F., Ramakrishnan, C., Mattis, J., Prakash, R., Diester, I., Goshen, I., Thompson, K. R., & Deisseroth, K. (2010) · Cell · doi:10.1016/j.cell.2010.02.037 · Cited by 1,018
Self-citationNagel, G., Brauner, M., Liewald, J. F., Adeishvili, N., Bamberg, E., & Gottschalk, A. (2005) · Current Biology · doi:10.1016/j.cub.2005.11.032 · Cited by 1,001
Channelrhodopsin-2-assisted circuit mapping of long-range callosal projections
Petreanu, L., Huber, D., Sobczyk, A., & Svoboda, K. (2007) · Nature Neuroscience · doi:10.1038/nn1891 · Cited by 930
Encoding of conditioned fear in central amygdala inhibitory circuits
Ciocchi, S., Herry, C., Grenier, F., Wolff, S. B. E., Letzkus, J. J., Vlachos, I., Ehrlich, I., Sprengel, R., Deisseroth, K., Stadler, M. B., et al. (2010) · Nature · doi:10.1038/nature09559 · Cited by 924
Self-citationGenetic dissection of an amygdala microcircuit that gates conditioned fear
Haubensak, W., Kunwar, P. S., Cai, H., Ciocchi, S., Wall, N. R., Ponnusamy, R., Biag, J., Dong, H.-W., Deisseroth, K., Callaway, E. M., et al. (2010) · Nature · doi:10.1038/nature09553 · Cited by 840
Self-citationMattis, J., Tye, K. M., Ferenczi, E. A., Ramakrishnan, C., O'Shea, D. J., Prakash, R., Gunaydin, L. A., Hyun, M., Fenno, L. E., Gradinaru, V., et al. (2012) · Nature Methods · doi:10.1038/nmeth.1808 · Cited by 780
Self-citationArenkiel, B. R., Peca, J., Davison, I. G., Feliciano, C., Deisseroth, K., Augustine, G. J., Ehlers, M. D., & Feng, G. (2007) · Neuron · doi:10.1016/j.neuron.2007.03.005 · Cited by 755
Self-citationBi-stable neural state switches
Berndt, A., Yizhar, O., Gunaydin, L. A., Hegemann, P., & Deisseroth, K. (2009) · Nature Neuroscience · doi:10.1038/nn.2247 · Cited by 611
Self-citationDynamics of Retrieval Strategies for Remote Memories
Goshen, I., Brodsky, M., Prakash, R., Wallace, J., Gradinaru, V., Ramakrishnan, C., & Deisseroth, K. (2011) · Cell · doi:10.1016/j.cell.2011.09.033 · Cited by 548
Self-citationThe Microbial Opsin Family of Optogenetic Tools
Zhang, F., Vierock, J., Yizhar, O., Fenno, L. E., Tsunoda, S., Kianianmomeni, A., Prigge, M., Berndt, A., Cushman, J., Polle, J., et al. (2011) · Cell · doi:10.1016/j.cell.2011.12.004 · Cited by 509
Self-citationImaging input and output of neocortical networks in vivo
Kerr, J. N. D., Greenberg, D., & Helmchen, F. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0506029102 · Cited by 474
Optical recording of action potentials in mammalian neurons using a microbial rhodopsin
Kralj, J. M., Douglass, A. D., Hochbaum, D. R., Maclaurin, D., & Cohen, A. E. (2012) · Nature Methods · doi:10.1038/nmeth.1782 · Cited by 460
Optogenetic dissection of a behavioural module in the vertebrate spinal cord
Wyart, C., Bene, F. D., Warp, E., Scott, E. K., Trauner, D., Baier, H., & Isacoff, E. Y. (2009) · Nature · doi:10.1038/nature08323 · Cited by 409
Scanless two-photon excitation of channelrhodopsin-2
Papagiakoumou, E., Anselmi, F., Bègue, A., de Sars, V., Glückstad, J., Isacoff, E. Y., & Emiliani, V. (2010) · Nature Methods · doi:10.1038/nmeth.1505 · Cited by 407
Wang, H., Peca, J., Matsuzaki, M., Matsuzaki, K., Noguchi, J., Qiu, L., Wang, D., Zhang, F., Boyden, E., Deisseroth, K., et al. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0700384104 · Cited by 390
Self-citationLateral competition for cortical space by layer-specific horizontal circuits
Adesnik, H., & Scanziani, M. (2010) · Nature · doi:10.1038/nature08935 · Cited by 356
SLM microscopy: scanless two-photon imaging and photostimulation using spatial light modulators
Nikolenko, V. (2008) · Frontiers in Neural Circuits · doi:10.3389/neuro.04.005.2008 · Cited by 340
Optogenetic manipulation of neural activity in freely moving Caenorhabditis elegans
Leifer, A. M., Fang-Yen, C., Gershow, M., Alkema, M. J., & Samuel, A. D. T. (2011) · Nature Methods · doi:10.1038/nmeth.1554 · Cited by 319
Optical activation of lateral amygdala pyramidal cells instructs associative fear learning
Johansen, J. P., Hamanaka, H., Monfils, M. H., Behnia, R., Deisseroth, K., Blair, H. T., & LeDoux, J. E. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1002418107 · Cited by 308
Self-citationTwo-photon excitation of channelrhodopsin-2 at saturation
Rickgauer, J. P., & Tank, D. W. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0907084106 · Cited by 287
Optical interrogation of neural circuits in Caenorhabditis elegans
Guo, Z. V., Hart, A. C., & Ramanathan, S. (2009) · Nature Methods · doi:10.1038/nmeth.1397 · Cited by 242
Driving Opposing Behaviors with Ensembles of Piriform Neurons
Choi, G. B., Stettler, D. D., Kallman, B. R., Bhaskar, S. T., Fleischmann, A., & Axel, R. (2011) · Cell · doi:10.1016/j.cell.2011.07.041 · Cited by 236
Leptin regulates the reward value of nutrient
Domingos, A. I., Vaynshteyn, J., Voss, H. U., Ren, X., Gradinaru, V., Zang, F., Deisseroth, K., de Araujo, I. E., & Friedman, J. (2011) · Nature Neuroscience · doi:10.1038/nn.2977 · Cited by 230
Self-citationStirman, J. N., Crane, M. M., Husson, S. J., Wabnig, S., Schultheis, C., Gottschalk, A., & Lu, H. (2011) · Nature Methods · doi:10.1038/nmeth.1555 · Cited by 216
Two-photon single-cell optogenetic control of neuronal activity by sculpted light
Andrasfalvy, B. K., Zemelman, B. V., Tang, J., & Vaziri, A. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1006620107 · Cited by 205
RuBi-Glutamate: Two-photon and visible-light photoactivation of neurons and dendritic spines
Fino, E. (2009) · Frontiers in Neural Circuits · doi:10.3389/neuro.04.002.2009 · Cited by 195
Chemical Two-Photon Uncaging: a Novel Approach to Mapping Glutamate Receptors
Pettit, D. L., Wang, S. S.-H., Gee, K. R., & Augustine, G. J. (1997) · Neuron · doi:10.1016/s0896-6273(00)80361-x · Cited by 180
Ihara, K., Umemura, T., Katagiri, I., Kitajima-Ihara, T., Sugiyama, Y., Kimura, Y., & Mukohata, Y. (1999) · Journal of Molecular Biology · doi:10.1006/jmbi.1998.2286 · Cited by 171
Two-photon uncaging of γ-aminobutyric acid in intact brain tissue
Matsuzaki, M., Hayama, T., Kasai, H., & Ellis‐Davies, G. C. R. (2010) · Nature Chemical Biology · doi:10.1038/nchembio.321 · Cited by 111
Neuronal filtering of multiplexed odour representations
Blumhagen, F., Zhu, P., Shum, J. W. H., Zhang, Y., Yaksi, E., Deisseroth, K. A., & Friedrich, R. W. (2011) · Nature · doi:10.1038/nature10633 · Cited by 110
Self-citationReshaping the optical dimension in optogenetics
Vaziri, A., & Emiliani, V. (2011) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2011.11.011 · Cited by 72
Jerome, J., Foehring, R. C., Armstrong, W. E., Spain, W. J., & Heck, D. H. (2011) · Frontiers in Systems Neuroscience · doi:10.3389/fnsys.2011.00070 · Cited by 15
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Integration of optogenetics with complementary methodologies in systems neuroscience
Kim, C. K., Adhikari, A., & Deisseroth, K. (2017) · Nature reviews. Neuroscience · doi:10.1038/nrn.2017.15 · Cited by 690
Self-citationCortical layer-specific critical dynamics triggering perception
Marshel, J. H., Kim, Y. S., Machado, T. A., Quirin, S., Benson, B., Kadmon, J., Raja, C., Chibukhchyan, A., Ramakrishnan, C., Inoue, M., et al. (2019) · Science · doi:10.1126/science.aaw5202 · Cited by 652
Self-citationProjections from neocortex mediate top-down control of memory retrieval
Rajasethupathy, P., Sankaran, S., Marshel, J. H., Kim, C. K., Ferenczi, E., Lee, S. Y., Berndt, A., Ramakrishnan, C., Jaffe, A., Lo, M., et al. (2015) · Nature · doi:10.1038/nature15389 · Cited by 509
Self-citationFast high-resolution miniature two-photon microscopy for brain imaging in freely behaving mice
Zong, W., Wu, R., Li, M., Hu, Y., Li, Y., Li, J., Rong, H., Wu, H., Xu, Y., Lu, Y., et al. (2017) · Nature Methods · doi:10.1038/nmeth.4305 · Cited by 513
Consciousness in humans and non-human animals: recent advances and future directions
Boly, M., Seth, A. K., Wilke, M., Ingmundson, P., Baars, B., Laureys, S., Edelman, D. B., & Tsuchiya, N. (2013) · Frontiers in Psychology · doi:10.3389/fpsyg.2013.00625 · Cited by 291
Metadata
- Authors
- Prakash, R., Yizhar, O., Grewe, B., Ramakrishnan, C., Wang, N., Goshen, I., Packer, A. M., Peterka, D. S., Yuste, R., Schnitzer, M. J., & Deisseroth, K.
- Venue
- Nature Methods
- Published
- 2012-11-11
- Volume
- 9
- Issue
- 12
- Pages
- 1171-1179
- ISSN
- 1548-7091 (ISSN-L)
- 1548-7105
- OpenAlex
- W2074869013
- Cited by
- 334
- References
- 48
- FWCI
- 9.85
- Type
- journal article
- Language
- en
- Open access
- green
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