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DNA methylation landscapes: provocative insights from epigenomics
Abstract
The genomes of many animals, plants and fungi are tagged by methylation of DNA cytosine. To understand the biological significance of this epigenetic mark it is essential to know where in the genome it is located. New techniques are making it easier to map DNA methylation patterns on a large scale and the results have already provided surprises. In particular, the conventional view that DNA methylation functions predominantly to irreversibly silence transcription is being challenged. Not only is promoter methylation often highly dynamic during development, but many organisms also seem to target DNA methylation specifically to the bodies of active genes.
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“here, increased levels of methylation (i.e.hypermethylation) result in a proportionally increased transcription rate and vice versa hypomethylation leads to reduced transcription levels (Suzuki & Bird, 2008)”
From The applied implications of epigenetics in anxiety, affective and stress-related disorders - A review and synthesis on psychosocial stress, psychotherapy and prevention (2020) · cites this paper as Suzuki & Bird, 2008
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Cites
DNA methylation patterns and epigenetic memory
Bird, A. (2002) · Genes & Development · doi:10.1101/gad.947102 · Cited by 7,124
Self-citationOkano, M., Bell, D. W., Haber, D. A., & Li, E. (1999) · Cell · doi:10.1016/s0092-8674(00)81656-6 · Cited by 6,143
Jones, P. A., & Baylin, S. B. (2007) · Cell · doi:10.1016/j.cell.2007.01.029 · Cited by 4,515
Targeted mutation of the DNA methyltransferase gene results in embryonic lethality
Li, E., Bestor, T. H., & Jaenisch, R. (1992) · Cell · doi:10.1016/0092-8674(92)90611-f · Cited by 3,984
CpG-rich islands and the function of DNA methylation
Bird, A. P. (1986) · Nature · doi:10.1038/321209a0 · Cited by 3,777
Self-citationEpigenetic differences arise during the lifetime of monozygotic twins
Fraga, M. F., Ballestar, E., Paz, M. F., Ropero, S., Setien, F., Ballestar, M. L., Heine-Suñer, D., Cigudosa, J. C., Urioste, M., Benitez, J., et al. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0500398102 · Cited by 3,602
CpG Islands in vertebrate genomes
Gardiner‐Garden, M., & Frommer, M. (1987) · Journal of Molecular Biology · doi:10.1016/0022-2836(87)90689-9 · Cited by 3,417
Frommer, M., McDonald, L. E., Millar, D. S., Collis, C. M., Watt, F., Grigg, G. W., Molloy, P. L., & Paul, C. L. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.5.1827 · Cited by 3,238
Bird, A. (2007) · Nature · doi:10.1038/nature05913 · Cited by 3,011
Self-citationDNA methylation and human disease
Robertson, K. D. (2005) · Nature Reviews Genetics · doi:10.1038/nrg1655 · Cited by 2,864
Cited by
Sorted by citations
Items 301–400 of 1,007
Okashita, N., Kumaki, Y., Ebi, K., Nishi, M., Okamoto, Y., Nakayama, M., Hashimoto, S., Nakamura, T., Sugasawa, K., Kojima, N., et al. (2013) · Development · doi:10.1242/dev.099622 · Cited by 134
Epigenetics and Liver Fibrosis
Morán‐Salvador, E., & Mann, J. (2017) · Cellular and Molecular Gastroenterology and Hepatology · doi:10.1016/j.jcmgh.2017.04.007 · Cited by 140
DNA Methyltransferases, DNA Methylation, and Age-Associated Cognitive Function
Cui, D., & Xu, X. Z. S. (2018) · International Journal of Molecular Sciences · doi:10.3390/ijms19051315 · Cited by 139
The emergence of the brain non-CpG methylation system in vertebrates
de Mendoza, A., Poppe, D., Buckberry, S., Pflueger, J., Albertin, C. B., Daish, T., Bertrand, S., de la Calle‐Mustienes, E., Gómez-Skármeta, J. L., Nery, J. R., et al. (2021) · Nature Ecology & Evolution · doi:10.1038/s41559-020-01371-2 · Cited by 135
DNA methylation and epigenetic control of cellular differentiation
Khavari, D. A., Sen, G. L., & Rinn, J. L. (2010) · Cell Cycle · doi:10.4161/cc.9.19.13385 · Cited by 135
Bauer, C., Göbel, K., Nagaraj, N., Colantuoni, C., Wang, M., Müller, U., Kremmer, E., Rottach, A., & Leonhardt, H. (2015) · Journal of Biological Chemistry · doi:10.1074/jbc.m114.605881 · Cited by 144
Vining, K. J., Pomraning, K., Wilhelm, L., Priest, H. D., Pellegrini, M. A., Mockler, T. C., Freitag, M., & Strauss, S. H. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-27 · Cited by 142
DNA methylation‐mediated epigenetic control
Rottach, A., Leonhardt, H., & Spada, F. (2009) · Journal of Cellular Biochemistry · doi:10.1002/jcb.22253 · Cited by 150
Olsen, A. S., Sarras, M. P., Leontovich, A. A., & Intine, R. V. A. (2012) · Diabetes · doi:10.2337/db11-0588 · Cited by 136
Rodríguez‐Ubreva, J., Català‐Moll, F., Obermajer, N., Álvarez‐Errico, D., Ramírez, R. N., Vento‐Tormo, R., Moreno‐Bueno, G., Edwards, R. P., Mortazavi, A., Kaliński, P., et al. (2017) · Cell Reports · doi:10.1016/j.celrep.2017.09.018 · Cited by 134
Methamphetamine Downregulates Striatal Glutamate Receptors via Diverse Epigenetic Mechanisms
Jayanthi, S., McCoy, M. T., Chen, B., Britt, J. P., Kourrich, S., Yau, H., Ladenheim, B., Krasnova, I. N., Bonci, A., & Cadet, J. L. (2013) · Biological Psychiatry · doi:10.1016/j.biopsych.2013.09.034 · Cited by 136
Inflammatory signalling as mediator of epigenetic modulation in tissue-specific chronic inflammation
Bäckdahl, L., Bushell, A., & Beck, S. (2008) · The International Journal of Biochemistry & Cell Biology · doi:10.1016/j.biocel.2008.08.023 · Cited by 135
Handunnetthi, L., Ramagopalan, S. V., Ebers, G. C., & Knight, J. C. (2009) · Genes and Immunity · doi:10.1038/gene.2009.83 · Cited by 139
Genomic insights into cancer-associated aberrant CpG island hypermethylation
Sproul, D., & Meehan, R. R. (2013) · Briefings in Functional Genomics · doi:10.1093/bfgp/els063 · Cited by 135
Rusiecki, J. A., Chen, L., Srikantan, V., Zhang, L., Yan, L., Polin, M., & Baccarelli, A. (2012) · Epigenomics · doi:10.2217/epi.11.116 · Cited by 135
Maryum, Z., Luqman, T., Nadeem, S., Khan, S. M. U. D., Wang, B., Ditta, A., & Khan, M. K. R. (2022) · Frontiers in Plant Science · doi:10.3389/fpls.2022.907937 · Cited by 150
The Replication Focus Targeting Sequence (RFTS) Domain Is a DNA-competitive Inhibitor of Dnmt1
Syeda, F., Fagan, R. L., Wean, M., Avvakumov, G. V., Walker, J. R., Xue, S., Dhe‐Paganon, S., & Brenner, C. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m110.209882 · Cited by 131
BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing
Lutsik, P., Feuerbach, L., Arand, J., Lengauer, T., Walter, J., & Bock, C. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr312 · Cited by 131
The structural basis for selective binding of non-methylated CpG islands by the CFP1 CXXC domain
Xu, C., Bian, C., Lam, R., Dong, A., & Min, J. (2011) · Nature Communications · doi:10.1038/ncomms1237 · Cited by 130
The chemistries and consequences of DNA and RNA methylation and demethylation
Traube, F. R., & Carell, T. (2017) · RNA Biology · doi:10.1080/15476286.2017.1318241 · Cited by 131
The Importance of ncRNAs as Epigenetic Mechanisms in Phenotypic Variation and Organic Evolution
Frías-Lasserre, D., & Villagra, C. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.02483 · Cited by 139
Schmid‐Hempel, P. (2021) · doi:10.1093/oso/9780198832140.001.0001 · Cited by 137
N 6-Methyladenosine (m6A) Methylation in mRNA with A Dynamic and Reversible Epigenetic Modification
Wu, R., Jiang, D., Wang, Y., & Wang, X. (2016) · Molecular Biotechnology · doi:10.1007/s12033-016-9947-9 · Cited by 131
The caste- and sex-specific DNA methylome of the termite Zootermopsis nevadensis
Glastad, K. M., Gokhale, K., Liebig, J., & Goodisman, M. A. D. (2016) · Scientific Reports · doi:10.1038/srep37110 · Cited by 128
Lechner, M., Fenton, T. R., West, J., Wilson, G. A., Feber, A., Henderson, S. R., Thirlwell, C., Dibra, H. K., Jay, A., Butcher, L. M., et al. (2013) · Genome Medicine · doi:10.1186/gm419 · Cited by 128
Alhosin, M., Sharif, T., Mousli, M., Étienne-Selloum, N., Fuhrmann, G., Schini‐Kerth, V. B., & Bronner, C. (2011) · Journal of Experimental & Clinical Cancer Research · doi:10.1186/1756-9966-30-41 · Cited by 135
Short-Read Sequencing Technologies for Transcriptional Analyses
Simon, S. A., Zhai, J., Nandety, R. S., McCormick, K. P., Zeng, J., Mejía, D. A., & Meyers, B. C. (2009) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.043008.092032 · Cited by 131
Active DNA Demethylation in Plants and AnimalsPreprint
Zhang, H., & Zhu, J. (2012) · Cold Spring Harbor Symposia on Quantitative Biology · doi:10.1101/sqb.2012.77.014936 · Cited by 132
Nucleic Acid Oxidation in DNA Damage Repair and Epigenetics
Zheng, G., Fu, Y., & He, C. (2014) · Chemical Reviews · doi:10.1021/cr400432d · Cited by 131
Jeon, J., Choi, J., Lee, G.-W., Park, S., Huh, A., Dean, R. A., & Lee, Y. (2015) · Scientific Reports · doi:10.1038/srep08567 · Cited by 126
Hall, L. M., Booker, H., Siloto, R. M. P., Jhala, A. J., & Weselake, R. J. (2016) · Elsevier eBooks · doi:10.1016/b978-1-893997-98-1.00006-3 · Cited by 126
Epigenetics of drug abuse: predisposition or response
Nielsen, D. A., Utrankar, A., Reyes, J. A., Simons, D. D., & Kosten, T. R. (2012) · Pharmacogenomics · doi:10.2217/pgs.12.94 · Cited by 125
Studying the epigenome using next generation sequencing
Ku, C., Naidoo, N., Wu, M., & Soong, R. (2011) · Journal of Medical Genetics · doi:10.1136/jmedgenet-2011-100242 · Cited by 127
On how mammalian transcription factors recognize methylated DNA
Buck‐Koehntop, B. A., & Defossez, P. (2013) · Epigenetics · doi:10.4161/epi.23632 · Cited by 138
Takayama, S., Dhahbi, J. M., Roberts, A., Mao, G., Heo, S., Pachter, L. S., Martin, D. I. K., & Boffelli, D. (2014) · Genome Research · doi:10.1101/gr.162412.113 · Cited by 130
Prenatal Diagnosis Innovation: Genome Sequencing of Maternal Plasma
Wong, F. C. K., & Lo, Y. M. D. (2015) · Annual Review of Medicine · doi:10.1146/annurev-med-091014-115715 · Cited by 123
The Impact of Recent Alcohol Use on Genome Wide DNA Methylation Signatures
Philibert, R. A., Plume, J. M., Gibbons, F. X., Brody, G. H., & Beach, S. R. H. (2012) · Frontiers in Genetics · doi:10.3389/fgene.2012.00054 · Cited by 128
Patterns of DNA Methylation in Animals: An Ecotoxicological Perspective
Head, J. A. (2014) · Integrative and Comparative Biology · doi:10.1093/icb/icu025 · Cited by 131
Epigenetic Biomarker Development
Bock, C. (2009) · Epigenomics · doi:10.2217/epi.09.6 · Cited by 129
Linking epigenetics and biological conservation: Towards a conservation epigenetics perspective
Rey, O., Eizaguirre, C., Angers, B., Baltazar‐Soares, M., Sagonas, Κ., Prunier, J. G., & Blanchet, S. (2019) · Functional Ecology · doi:10.1111/1365-2435.13429 · Cited by 134
Confining euchromatin/heterochromatin territory: jumonji crosses the line
Tamaru, H. (2010) · Genes & Development · doi:10.1101/gad.1941010 · Cited by 118
PPARγ-induced PARylation promotes local DNA demethylation by production of 5-hydroxymethylcytosine
Fujiki, K., Shinoda, A., Kano, F., Sato, R., Shirahige, K., & Murata, M. (2013) · Nature Communications · doi:10.1038/ncomms3262 · Cited by 123
The emerging role of epigenetics in cardiovascular disease
Khalil, C. A. (2014) · Therapeutic Advances in Chronic Disease · doi:10.1177/2040622314529325 · Cited by 130
Nijland, M. J., Mitsuya, K., Li, C., Ford, S. P., McDonald, T. J., Nathanielsz, P. W., & Cox, L. A. (2010) · The Journal of Physiology · doi:10.1113/jphysiol.2009.184168 · Cited by 123
Prenatal maternal immune activation causes epigenetic differences in adolescent mouse brain
Basil, P., Li, Q., Dempster, E. L., Mill, J., Sham, P.-C., Wong, C. C. Y., & McAlonan, G. M. (2014) · Translational Psychiatry · doi:10.1038/tp.2014.80 · Cited by 116
Ghahramani, N. M., Ngun, T. C., Chen, P.-Y., Tian, Y., Krishnan, S., Muir, S., Rubbi, L., Arnold, A. P., de Vries, G. J., Forger, N. G., et al. (2014) · Biology of Sex Differences · doi:10.1186/2042-6410-5-8 · Cited by 121
Khan, S. A. (2015) · World Journal of Biological Chemistry · doi:10.4331/wjbc.v6.i4.333 · Cited by 123
Genome‐wide DNA methylation profiles in precancerous conditions and cancers
Kanai, Y. (2009) · Cancer Science · doi:10.1111/j.1349-7006.2009.01383.x · Cited by 120
Epigenetic Landscape during Coronavirus Infection
Schäfer, A., & Baric, R. S. (2017) · Pathogens · doi:10.3390/pathogens6010008 · Cited by 119
Regulation of Plant Growth and Development: A Review From a Chromatin Remodeling Perspective
Ojolo, S. P., Cao, S., Priyadarshani, S. V. G. N., Li, W., Yan, M., Aslam, M., Zhao, H., & Qin, Y. (2018) · Frontiers in Plant Science · doi:10.3389/fpls.2018.01232 · Cited by 120
Klughammer, J., Romanovskaia, D., Nemc, A., Posautz, A., Seid, C. A., Schuster, L. C., Keinath, M. C., Ramos, J. S. L., Kosack, L., Evankow, A. M., et al. (2023) · Nature Communications · doi:10.1038/s41467-022-34828-y · Cited by 131
Sharma, S., De Carvalho, D. D., Jeong, S., Jones, P. A., & Liang, G. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1001286 · Cited by 119
DNA methylation footprints during soybean domestication and improvement
Shen, Y., Zhang, J., Liu, Y., Liu, S., Liu, Z., Duan, Z., Wang, Z., Zhu, B., Guo, Y., & Tian, Z. (2018) · Genome biology · doi:10.1186/s13059-018-1516-z · Cited by 119
Lan, X., Cretney, E. C., Schmidt, J. K., Khateeb, K., Berg, M. A., Peñagaricano, F., Magness, R. R., Radunz, A. E., & Khatib, H. (2013) · Frontiers in Genetics · doi:10.3389/fgene.2013.00049 · Cited by 122
Li, Y., Liew, Y. J., Cui, G., Cziesielski, M. J., Zahran, N., Michell, C., Voolstra, C. R., & Aranda, M. (2018) · Science Advances · doi:10.1126/sciadv.aat2142 · Cited by 118
Hoseok, I., & Cho, J. (2015) · Advances in clinical chemistry · doi:10.1016/bs.acc.2015.07.003 · Cited by 121
Kanwal, R., & Gupta, S. (2010) · Journal of Applied Physiology · doi:10.1152/japplphysiol.00066.2010 · Cited by 124
Conservation of tRNA and rRNA 5-methylcytosine in the kingdom Plantae
Burgess, A., David, R., & Searle, I. R. (2015) · BMC Plant Biology · doi:10.1186/s12870-015-0580-8 · Cited by 117
Epigenetics, Autism Spectrum, and Neurodevelopmental Disorders
Rangasamy, S., D’Mello, S. R., & Narayanan, V. (2013) · Neurotherapeutics · doi:10.1007/s13311-013-0227-0 · Cited by 122
Liu, Z., Chen, O. M., Zheng, M., Wang, L., Zhou, Y., Yin, C., Liu, J., & Li, Q. (2016) · Stem Cell Research · doi:10.1016/j.scr.2016.02.037 · Cited by 117
Yu, J., Qiu, Y., Yang, J., Bian, S., Chen, G., Deng, M., Kang, H., & Huang, L. J. (2016) · Scientific Reports · doi:10.1038/srep30053 · Cited by 115
DNA methylation and evolution of duplicate genes
Keller, T. E., & Yi, S. V. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1321420111 · Cited by 117
Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targetingPreprint
Arnold, P., Schöler, A., Pachkov, M. V., Balwierz, P. J., Jørgensen, H. F., Stadler, M. B., van Nimwegen, E., & Schübeler, D. (2012) · Genome Research · doi:10.1101/gr.142661.112 · Cited by 119
Kanazawa, A., Inaba, J.-I., Shimura, H., Otagaki, S., Tsukahara, S., Matsuzawa, A., Kim, B. M., Goto, K., & Masuta, C. (2010) · The Plant Journal · doi:10.1111/j.1365-313x.2010.04401.x · Cited by 117
DNA Methylation, Epigenetics, and Evolution in Vertebrates: Facts and Challenges
Varriale, A. (2014) · International Journal of Evolutionary Biology · doi:10.1155/2014/475981 · Cited by 117
Chordate roots of the vertebrate nervous system: expanding the molecular toolkit
Holland, L. Z. (2009) · Nature reviews. Neuroscience · doi:10.1038/nrn2703 · Cited by 118
Vlaanderen, J. J., Moore, L. E., Smith, M. T., Lan, Q., Zhang, L., Skibola, C. F., Rothman, N., & Vermeulen, R. C. H. (2009) · Occupational and Environmental Medicine · doi:10.1136/oem.2008.042788 · Cited by 118
The Human Proteins MBD5 and MBD6 Associate with Heterochromatin but They Do Not Bind Methylated DNA
Laget, S., Joulie, M., Masson, F. L., Sasai, N., Christians, E., Pradhan, S., Roberts, R. J., & Defossez, P. (2010) · PLoS ONE · doi:10.1371/journal.pone.0011982 · Cited by 113
Multi-scale coding of genomic information: From DNA sequence to genome structure and function
Arnéodo, A., Vaillant, C., Audit, B., Argoul, F., d’Aubenton-Carafa, Y., & Thermes, C. (2010) · Physics Reports · doi:10.1016/j.physrep.2010.10.001 · Cited by 118
Ochi, K. (2016) · The Journal of Antibiotics · doi:10.1038/ja.2016.82 · Cited by 113
Alvarez, M. C., Maso, V., Torello, C. O., Ferro, K. P., & Saad, S. T. O. (2018) · Clinical Epigenetics · doi:10.1186/s13148-018-0563-3 · Cited by 113
DNA hypermethylation as a chemotherapy target
Ren, J., Singh, B. N., Huang, Q., Li, Z., Gao, Y., Mishra, P., Hwa, Y. L., Li, J., Dowdy, S. C., & Jiang, S. (2011) · Cellular Signalling · doi:10.1016/j.cellsig.2011.02.003 · Cited by 114
An epigenetic mechanism for cavefish eye degeneration
Gore, A. V., Tomins, K. A., Iben, J., Ma, L., Castranova, D., Davis, A. E. M., Parkhurst, A., Jeffery, W. R., & Weinstein, B. M. (2018) · Nature Ecology & Evolution · doi:10.1038/s41559-018-0569-4 · Cited by 111
Gene—Environment Interactions in Major Depressive Disorder
Klengel, T., & Binder, E. B. (2013) · The Canadian Journal of Psychiatry · doi:10.1177/070674371305800203 · Cited by 114
The obesity-associated Fto gene is a transcriptional coactivator
Wu, Q., Saunders, R. A., Szkudlarek-Mikho, M., de la Serna, I. L., & Chin, K. (2010) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2010.09.064 · Cited by 112
Signatures of DNA Methylation across Insects Suggest Reduced DNA Methylation Levels in Holometabola
Provataris, P., Meusemann, K., Niehuis, O., Grath, S., & Misof, B. Y. (2018) · Genome Biology and Evolution · doi:10.1093/gbe/evy066 · Cited by 110
Veluchamy, A., Lin, X., Maumus, F., Rivarola, M., Bhavsar, J., Creasy, T. H., O’Brien, K., Sengamalay, N. A., Tallon, L. J., Smith, A. D., et al. (2013) · Nature Communications · doi:10.1038/ncomms3091 · Cited by 116
In Utero Heat Stress Alters the Offspring Epigenome
Skibiel, A. L., Peñagaricano, F., Amorín, R., Ahmed, B. M. S., Dahl, G. E., & Laporta, J. (2018) · Scientific Reports · doi:10.1038/s41598-018-32975-1 · Cited by 121
Lewis, S. H., Ross, L., Bain, S. A., Pahita, E., Smith, S. A., Cordaux, R., Miska, E. A., Lenhard, B., Jiggins, F. M., & Sarkies, P. (2020) · PLoS Genetics · doi:10.1371/journal.pgen.1008864 · Cited by 103
Building consensus around the assessment and interpretation of Symbiodiniaceae diversity
Davies, S. W., Gamache, M. H., Howe‐Kerr, L. I., Kriefall, N. G., Baker, A. C., Banaszak, A. T., Bay, L. K., Bellantuono, A. J., Bhattacharya, D., Chan, C. X., et al. (2023) · PeerJ · doi:10.7717/peerj.15023 · Cited by 111
MeCP2: the long trip from a chromatin protein to neurological disorders
Ausió, J., Paz, A. M. D., & Esteller, M. (2014) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2014.03.004 · Cited by 108
Sources of epigenetic variation and their applications in natural populations
Angers, B., Perez, M., Menicucci, T. D. A., & Leung, C. (2020) · Evolutionary Applications · doi:10.1111/eva.12946 · Cited by 115
Rahn, E. J., Karlsson, M. G., & Sweatt, J. D. (2013) · Neurobiology of Learning and Memory · doi:10.1016/j.nlm.2013.06.008 · Cited by 113
Luo, G., Wang, F., Weng, X., Chen, K., Hao, Z., Yu, M., Deng, X., Liu, J., & He, C. (2016) · Nature Communications · doi:10.1038/ncomms11301 · Cited by 106
The Genomic Impact of DNA CpG Methylation on Gene Expression; Relationships in Prostate Cancer
Long, M. D., Smiraglia, D. J., & Campbell, M. J. (2017) · Biomolecules · doi:10.3390/biom7010015 · Cited by 111
Recent insights into cotton functional genomics: progress and future perspectives
Ashraf, J., Zuo, D., Wang, Q., Malik, W., Zhang, Y., Abid, M. A., Cheng, H., Yang, Q., & Song, G. (2017) · Plant Biotechnology Journal · doi:10.1111/pbi.12856 · Cited by 109
Calling differentially methylated regions from whole genome bisulphite sequencing with DMRcate
Peters, T. J., Buckley, M. J., Chen, Y., Smyth, G. K., Goodnow, C. C., & Clark, S. J. (2021) · Nucleic Acids Research · doi:10.1093/nar/gkab637 · Cited by 113
Pieper, H. C., Evert, B. O., Kaut, O., Riederer, P. F., Waha, A., & Wüllner, U. (2008) · Neurobiology of Disease · doi:10.1016/j.nbd.2008.09.010 · Cited by 108
Structural Basis for Hydroxymethylcytosine Recognition by the SRA Domain of UHRF2
Zhou, T., Xiong, J., Wang, M., Yang, N., Wong, J., Zhu, B., & Xu, R.-M. (2014) · Molecular Cell · doi:10.1016/j.molcel.2014.04.003 · Cited by 106
Methylation and demethylation of the Arabidopsis genome
Furner, I. J., & Matzke, M. A. (2010) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2010.11.004 · Cited by 108
The Epigenetic Landscape of Acute Myeloid Leukemia
O’Brien, E. C., Prideaux, S. M., & Chevassut, T. J. T. (2014) · Advances in Hematology · doi:10.1155/2014/103175 · Cited by 115
CpG Methylation in the Hexamerin 110 Gene in the European Honeybee,Apis mellifera
Ikeda, T., Furukawa, S., Nakamura, J., Sasaki, M., & Sasaki, T. (2011) · Journal of Insect Science · doi:10.1673/031.011.7401 · Cited by 107
Bs RAD seq: screening DNA methylation in natural populations of non‐model species
Trucchi, E., Mazzarella, A. B., Gilfillan, G. D., Lorenzo, M. T., Schönswetter, P., & Paun, O. (2016) · Molecular Ecology · doi:10.1111/mec.13550 · Cited by 109
DNA methylation in Parkinson's disease
Wüllner, U., Kaut, O., deBoni, L., Piston, D., & Schmitt, I. (2016) · Journal of Neurochemistry · doi:10.1111/jnc.13646 · Cited by 107
Zampieri, M., Passananti, C., Calabrese, R., Perilli, M., Corbi, N., Cave, F. D., Guastafierro, T., Bacalini, M. G., Reale, A., Amicosante, G., et al. (2009) · PLoS ONE · doi:10.1371/journal.pone.0004717 · Cited by 106
DNA methylation profiles at birth and child ADHD symptoms.
van Mil, N. V., Steegers-Theunissen, R., Bouwland-Both, M., Verbiest, M., Rijlaarsdam, J., Hofman, A., Steegers, E., Heijmans, B., Jaddoe, V., Verhulst, F., et al. (2014) · Journal of Psychiatric Research · doi:10.1016/j.jpsychires.2013.10.017 · Cited by 113
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Chen, S. C.-C., Wang, K.-Y., & Shen, C.-K. J. (2013) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.445585 · Cited by 106
Varshney, D., Vavrova-Anderson, J., Oler, A. J., Cowling, V. H., Cairns, B. R., & White, R. J. (2015) · Nature Communications · doi:10.1038/ncomms7569 · Cited by 105
Chatterjee, R., & Vinson, C. (2012) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2012.02.014 · Cited by 109
Yang, H., Chang, F., You, C., Cui, J., Zhu, G., Wang, L., Zheng, Y., Qi, J., & Mā, H. (2014) · The Plant Journal · doi:10.1111/tpj.12726 · Cited by 105
Metadata
- Authors
- Suzuki, M. M., & Bird, A.
- Affiliations
- Wellcome Centre for Cell Biology (GB)
- Corresponding author
- Suzuki, Miho M.
- Venue
- Nature Reviews Genetics
- Published
- 2008-06
- Volume
- 9
- Issue
- 6
- Pages
- 465-476
- ISSN
- 1471-0056 (ISSN-L)
- 1471-0064
- OpenAlex
- W2114970231
- Cited by
- 3,039
- References
- 108
- Citations by year
- 2026: 61 · 2025: 89 · 2024: 120 · 2023: 128 · 2022: 167 · 2021: 236 · 2020: 184 · 2019: 163 · 2018: 173 · 2017: 201 · 2016: 195 · 2015: 195 · 2014: 224 · 2013: 214 · 2012: 198
- FWCI
- 12.51
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Reviews Genetics (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Wellcome Trust
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Syndromes and Imprinting
- Keywords
- DNA methylation, gene body, promoter methylation, gene silencing, gene expression regulation, epigenomics, cytosine methylation, development (biology), genome-wide methylation mapping
- MeSH terms
- Animals, Humans, Transcription, Genetic, Genome, DNA Methylation, Genomics, Epigenesis, Genetic
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