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Epithelial-cell recognition of commensal bacteria and maintenance of immune homeostasis in the gut
Abstract
Mucosal surfaces such as the intestinal tract are continuously exposed to both potential pathogens and beneficial commensal microorganisms. This creates a requirement for a homeostatic balance between tolerance and immunity that represents a unique regulatory challenge to the mucosal immune system. Recent findings suggest that intestinal epithelial cells, although once considered a simple physical barrier, are a crucial cell lineage for maintaining intestinal immune homeostasis. This Review discusses recent findings that identify a cardinal role for epithelial cells in sampling the intestinal microenvironment, discriminating pathogenic and commensal microorganisms and influencing the function of antigen-presenting cells and lymphocytes.
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“The host-microbiota relationship has been defined as the synergistic effect of microbial metabolites on host immunity, health and disease, energy metabolism, and cellular communication.59, 60, 61, 62, 63,64”
From Regulation of Intestinal Barrier Function by Microbial Metabolites (2021) · cites this paper as [64]
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“To avoid activation of self-reactive T cells and to limit unnecessary responses, such as those against commensal flora, DCs can imprint tolerance onto T cells (12).”
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Biofilm formation of mucosa-associated methanoarchaeal strains
Bang, C., Ehlers, C., Orell, A., Prasse, D., Spinner, M., Gorb, S. N., Albers, S., & Schmitz, R. A. (2014) · Frontiers in Microbiology · doi:10.3389/fmicb.2014.00353 · Cited by 36
“doi: 10.1111/j.1469-0691.2012.03952.x Dridi, B., Henry, M., El Khechine, A., Raoult, D., and Drancourt, M. (2009). High prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae detected in the human gut using an improved DNA detection protocol. PLoS ONE 4:e7063. doi: 10.1371/journal.pone.0007063 Eckburg,…”
BackgroundInfluentialHuman tRNA-Derived Small RNAs Modulate Host–Oral Microbial Interactions
He, X., Li, F., Bor, B., Koyano, K., Cen, L., Xiao, X. G., Shi, W., & Wong, D. T. (2018) · Journal of Dental Research · doi:10.1177/0022034518770605 · Cited by 36
“The human microbiota exists in a delicate balance with its host, and this equilibrium is maintained via multiple mechanisms of cross-domain communication and modulation (Artis 2008; Peterson and Artis 2014).”
BackgroundENteric Immunity SImulator: A Tool for In Silico Study of Gastroenteric Infections
Wendelsdorf, K. V., Alam, M., Bassaganya-Riera, J., Bisset, K. R., Eubank, S., Hontecillas, R., Hoops, S., & MARATHE, M. V. (2012) · IEEE Transactions on NanoBioscience · doi:10.1109/tnb.2012.2211891 · Cited by 36
“[42] as well as cytotoxins secreted by M1 that damage epithelial cells.”
Chutkan, H., & Kuehn, M. J. (2011) · Infection and Immunity · doi:10.1128/iai.05336-11 · Cited by 36
“The intestinal epithelium forms tight intracellular junctions and microvilli that inhibit the attachment and invasion of intestinal organisms (1).”
BackgroundInfluentialKashiwagi, Y., Yanagita, M., Kojima, Y., Shimabukuro, Y., & Murakami, S. (2011) · Archives of Oral Biology · doi:10.1016/j.archoralbio.2011.10.007 · Cited by 36
Ou, G., Rompikuntal, P. K., Bitar, A., Lindmark, B., Vaitkevicius, K., Wai, S. N., & Hammarström, M. (2009) · PLoS ONE · doi:10.1371/journal.pone.0007806 · Cited by 37
Wang, H., & Kotler, D. P. (2014) · Current Opinion in HIV and AIDS · doi:10.1097/coh.0000000000000066 · Cited by 36
The interaction between intestinal microenvironment and stroke
Zhao, L., Xiao, J., Li, S., Guo, Y., Fu, R., Hua, S., Du, Y., & Xu, S. (2023) · CNS Neuroscience & Therapeutics · doi:10.1111/cns.14275 · Cited by 38
Almeida, C. V. D., Lulli, M., Pilato, V. D., Schiavone, N., Russo, E., Nannini, G., Baldi, S., Borrelli, R., Bartolucci, G., Menicatti, M., et al. (2019) · Journal of Clinical Medicine · doi:10.3390/jcm8030388 · Cited by 37
“In fact, approximately 20% of cancers are associated with microbes [10], especially CRC [12–14], where a dynamic crosstalk exists between intestinal epithelial cells, the microbes (that colonize their apical surface), and the surrounding local immune cells [15], which, in turn, have a key role in CRC progression, espe…”
Microbiota: Overview and Implication in Immunotherapy-Based Cancer Treatments
Brandi, G., & Frega, G. (2019) · International Journal of Molecular Sciences · doi:10.3390/ijms20112699 · Cited by 36
“It is the mucus layer, together with the innate immune system that, at least in mice, actively contains microbiota, mainly in the lumen, limiting penetration into the mucosa and avoiding excessive pro-inflammatory signaling [39].”
BackgroundHuang, Y., Yu, Y., Zhan, S., Tomberlin, J. K., Huang, D., Cai, M., Zheng, L., Yu, Z., & Zhang, J. (2020) · PLoS ONE · doi:10.1371/journal.pone.0225873 · Cited by 35
A Basal Chordate Model for Studies of Gut Microbial Immune Interactions
Dishaw, L. J., Flores-Torres, J., Mueller, M. G., Karrer, C. R., Skapura, D. P., Melillo, D., Zucchetti, I., Santis, R. D., Pinto, M. R., & Litman, G. W. (2012) · Frontiers in Immunology · doi:10.3389/fimmu.2012.00096 · Cited by 35
“Although chronic inflammation in mammals involves a variety of gut-specific lymphocytes (i.e., adaptive immunity), gut microbial recognition, and immune homeostasis largely represent an innate immune phenomenon, for which the epithelium is primarily responsible (Artis, 2008).”
BackgroundTelling apart friend from foe: discriminating between commensals and pathogens at mucosal sites
Srinivasan, N. (2010) · Innate Immunity · doi:10.1177/1753425909357577 · Cited by 35
“Besides the important contribution to mammalian metabolism, commensal-derived metabolites are thought to have an immune-modulatory role.(20) For example, butyrate, a by-product of starch digestion, has been shown to inhibit strongly the expression of pro-inflammatory cytokines such as IL-12 and TNF-a, while inducing t…”
BackgroundMethodInfluentialDevelopment of the gut microbiota during early life in premature and term infants
Sim, K., Powell, E., Cornwell, E., Kroll, J. S., & Shaw, A. (2023) · Gut Pathogens · doi:10.1186/s13099-022-00529-6 · Cited by 35
“The community plays an important role in the digestion of food, the development of the immune system and in the maturation of the gut itself [1-3].”
BackgroundFactors Influencing Neonatal Gut Microbiome and Health with a Focus on Necrotizing Enterocolitis
Beharry, K. D. A., Latkowska, M., Valencia, A. M., Allana, A., Soto, J., Cai, C. L., GOLOMBEK, S. G., Hand, I. L., & Aranda, J. V. (2023) · Microorganisms · doi:10.3390/microorganisms11102528 · Cited by 39
“In addition, gut bacteria are involved in other signaling pathways that are important in maintaining the immune homeostasis of the intestinal mucosal barrier [83].”
BackgroundToll-Like Receptors: Role in Inflammation and Commensal Bacteria
Fooladi, A. A. I., Mousavi, S. F., Seghatoleslami, S., Yazdani, S., & Nourani, M. R. (2011) · Inflammation & Allergy - Drug Targets · doi:10.2174/187152811795564064 · Cited by 34
“In addition to regulating the development of the intestinal and systemic immune system, recent studies suggest that alterations in the acquisition or composition of commensal bacteria may trigger or influence the course of various metabolic and inflammatory disease states [63].”
BackgroundXu, L., Zhang, C., He, D., Jiang, N., Bai, Y., & Xin, Y. (2020) · Life Sciences · doi:10.1016/j.lfs.2020.117747 · Cited by 36
Human β-Defensin 3 Peptide Is Increased and Redistributed in Crohn’s Ileitis
Meisch, J. P., Nishimura, M., Vogel, R. M., Sung, H. C., Bednarchik, B., Ghosh, S. K., Fu, P., McCormick, T. S., Weinberg, A., & Levine, A. D. (2013) · Inflammatory Bowel Diseases · doi:10.1097/mib.0b013e318280b11a · Cited by 34
“the a-defensins HD-5 and HD-6, and more recently the Reg family lectin RegIIIg, localize to granules within intestinal crypt Paneth cells.(2,10,25) mRNA of hBD-3 has also been reported in IECs residing near the base of the crypt, as well as those near the surface of the lumen.”
BackgroundThey Must Hold Tight: Junction Proteins, Microbiota And Immunity In Intestinal Mucosa
Castoldi, Â., de Aguiar, C. F., Moraes‐Vieira, P. M., & Câmara, N. O. S. (2015) · Current Protein and Peptide Science · doi:10.2174/1389203716666150630133141 · Cited by 33
Role of the intestinal microbiota and fecal transplantation in inflammatory bowel diseases
Liang, J., Sha, S. M., & Wu, K. (2014) · Journal of Digestive Diseases · doi:10.1111/1751-2980.12211 · Cited by 34
Developmental Immunology and Role of Host Defenses in Fetal and Neonatal Susceptibility to Infection
Lewis, D. B., & Wilson, C. B. (2010) · Elsevier eBooks · doi:10.1016/b978-1-4160-6400-8.00004-3 · Cited by 35
Zhang, Y., Wu, S., Ma, J., Xia, Y., Ai, X., & Sun, J. (2014) · Tissue Barriers · doi:10.4161/21688362.2014.972849 · Cited by 31
“Epithelial cells are consistently exposed to bacteria, which play a key role in normal intestinal development and innate immunity.(4-11) The tight junctions (TJs) seal the space between adjacent epithelial cells.”
BackgroundFlach, J., van der Waal, M., Kardinaal, A., Schloesser, J., Ruijschop, R., & Claassen, E. (2018) · Cogent Food & Agriculture · doi:10.1080/23311932.2018.1452839 · Cited by 37
“Immune support Dysbacteriosis of the GI system is associated with several human diseases, including inflammatory bowel disease, colorectal cancer, and infections (Artis, 2008; Karin, Lawrence, & Nizet, 2006).”
BackgroundLin, Q., Yang, L., Han, L., Wang, Z., Luo, M., Zhu, D., Liu, H., Li, X., & Feng, Y. (2021) · Food Science and Human Wellness · doi:10.1016/j.fshw.2021.07.006 · Cited by 33
Bouike, G., Nishitani, Y., Shiomi, H., Yoshida, M., Azuma, T., Hashimoto, T., Kanazawa, K., & Mizuno, M. (2010) · Evidence-based Complementary and Alternative Medicine · doi:10.1155/2011/532180 · Cited by 33
“As various immune cells are affected by IEC in the gut [39], we used a coculture system using splenocytes from OT-II mice, which possess CD4+ T cells that highly express the OVA-specific TCR, and Caco-2 cells for assessing the effects of ABME on the differentiation of T cells via IEC.”
MethodZhang, W.-X., Zhang, Y., Qin, G., Li, K.-M., Wei, W., Li, S.-Y., & Yao, S.-K. (2019) · World Journal of Gastroenterology · doi:10.3748/wjg.v25.i43.6416 · Cited by 32
Zhang, D., Zhou, X., Liu, L., Guo, M., Huang, T., Zhou, W., Geng, F., Cui, S. W., & Nie, S. (2021) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.1c03814 · Cited by 32
Reactive Oxygen Species in Modulating Intestinal Stem Cell Dynamics and Function
Nath, A., Chakrabarti, P., Sen, S., & Barui, A. (2022) · Stem Cell Reviews and Reports · doi:10.1007/s12015-022-10377-1 · Cited by 35
Wu, Y.-Y., Hsu, C.-M., Chen, P.-H., Fung, C.-P., & Chen, L.-W. (2014) · Infection and Immunity · doi:10.1128/iai.01578-14 · Cited by 32
“The intestinal tract acts as a major physical barrier between the microflora and internal host tissue and responds to the mucosal innate system through the commensal microflora (5).”
BackgroundThingholm, L. B., Bang, C., Rühlemann, M. C., Starke, A., Sicks, F., Kaspari, V., Jandowsky, A., Frölich, K., Ismer, G., Bernhard, A., et al. (2021) · BMC Microbiology · doi:10.1186/s12866-021-02337-5 · Cited by 32
“Further, the gut microbiota is central for the maturation and functionality of the mammalian immune response [5–7].”
Luo, S., Wang, Y., Kang, X., Liu, P., & Wang, G. (2022) · Microbial Pathogenesis · doi:10.1016/j.micpath.2022.105809 · Cited by 32
Metadata
- Authors
- Artis, D.
- Affiliations
- University of Pennsylvania (US)
- Corresponding author
- Artis, David
- ORCID
- Artis, David
- Venue
- Nature reviews. Immunology
- Published
- 2008-06
- Volume
- 8
- Issue
- 6
- Pages
- 411-420
- ISSN
- 1474-1733 (ISSN-L)
- 1474-1741
- OpenAlex
- W2025114863
- Cited by
- 1,136
- References
- 167
- Citations by year
- 2026: 27 · 2025: 33 · 2024: 38 · 2023: 55 · 2022: 61 · 2021: 54 · 2020: 51 · 2019: 52 · 2018: 60 · 2017: 56 · 2016: 58 · 2015: 63 · 2014: 92 · 2013: 85 · 2012: 81
- FWCI
- 6.91
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature reviews. Immunology (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Cancer Institute (T32CA009140, T32-CA09140-30)
- National Institute of General Medical Sciences (F31-GM82187, F31GM082187)
- National Institute of Allergy and Infectious Diseases (AI74878, T32AI007532, R01AI074878, F32-AI72943, F32AI072943, R01AI061570, AI 61570)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Life Sciences › Immunology and Microbiology › Immunology › Immune Response and Inflammation
- Life Sciences › Immunology and Microbiology › Immunology › T-cell and B-cell Immunology
- Keywords
- intestinal epithelial cells, commensal bacteria, immune homeostasis, mucosal immunity, host-microbe interactions, epithelial barrier function, antigen presentation, lymphocytes, pathogen discrimination, gut microbiota
- MeSH terms
- Animals, Bacteria, Gastric Mucosa, Homeostasis, Humans, Intestinal Mucosa
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