Isolation, characterization and comparative genomics of potentially probiotic Lactiplantibacillus plantarum strains from Indian foods
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Abstract
Lactiplantibacillus plantarum is one of the most diverse species of lactic acid bacteria found in various habitats. The aim of this work was to perform preliminary phenotypic and genomic characterization of two novel and potentially probiotic L. plantarum strains isolated from Indian foods, viz., dhokla batter and jaggery. Both the strains were bile and acid tolerant, utilized various sugars, adhered to intestinal epithelial cells, produced exopolysaccharides and folate, were susceptible for tetracycline, erythromycin, and chloramphenicol, did not cause hemolysis, and exhibited antimicrobial and plant phenolics metabolizing activities. The genetic determinants of bile tolerance, cell-adhesion, bacteriocins production, riboflavin and folate biosynthesis, plant polyphenols utilization, and exopolysaccharide production were found in both the strains. One of the strains contained a large number of unique genes while the other had a simultaneous presence of glucansucrase and fructansucrase genes which is a rare trait in L. plantarum. Comparative genome analysis of 149 L. plantarum strains highlighted high variation in the cell-adhesion and sugar metabolism genes while the genomic regions for some other properties were relatively conserved. This work highlights the unique properties of our strains along with the probiotic and technically important genomic features of a large number of L. plantarum strains.
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Assembly of the raw reads generated bacterial chromosomes for the three L. plantarum isolates, each with a size similar to the previously reported range for sequenced L. plantarum isolates (3-3.6 Mbp).
“Assembly of the raw reads generated bacterial chromosomes, each with a size similar to that previously reported for sequenced L. plantarum isolates (range of 3–3.6 Mbp) [35].”
From Genomic Characterization of Lactiplantibacillus plantarum Strains: Potential Probiotics from Ethiopian Traditional Fermented Cottage Cheese (2024) · cites this paper as [35]
Assembly of raw reads generated bacterial chromosomes each with a size similar to previously reported L. plantarum isolates (range 3-3.6 Mbp), high compared to other LAB.
“Assembly of the raw reads led to the generation of bacterial chromosomes, each with a size similar to that reported before for sequenced L. plantarum isolates (range: 3–3.6 Mbp), which is high compared to the results for other LAB [35].”
From Genomic Characterization of Lactiplantibacillus plantarum Strains: Potential Probiotics from Ethiopian Traditional Fermented Cottage Cheese (2024) · cites this paper as [35]
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Flagged first, then by citations
Research works printed but not linked: 1
- [71]FAO/WHO. Probiotics in food: health and nutritional properties and guidelines for evaluation. Food Nutr. Pap.85, 71 (2001).
Cited by
Sorted by citations
Kandasamy, S., Yoo, J., Yun, J., Lee, K.-H., Kang, H.-B., Kim, J.-E., Oh, M.-H., & Ham, J.-S. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms232214494 · Cited by 51 · see citing works
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- Authors
- Surve, S., Shinde, D. B., & Kulkarni, R.
- Affiliations
- Dartmouth College (US)
- Symbiosis International University (IN)
- Corresponding author
- Kulkarni, Ram
- Venue
- Scientific Reports
- Published
- 2022-02-04
- Volume
- 12
- Issue
- 1
- Pages
- 1940-1940
- ISSN
- 2045-2322 (ISSN-L)
- PMC
- PMC8816928
- OpenAlex
- W4210559041
- Cited by
- 74
- References
- 100
- Citations by year
- 2026: 15 · 2025: 25 · 2024: 17 · 2023: 11 · 2022: 6
- FWCI
- 7.84
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Scientific Reports (publishedVersion, cc-by)
- Research Square (acceptedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Deutscher Akademischer Austauschdienst
- Science and Engineering Research Board
- Erasmus+ (598515-EPP-1-2018-1-IN-EPPKA2-CBHE-JP)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Food Science › Probiotics and Fermented Foods
- Life Sciences › Immunology and Microbiology › Microbiology › Reproductive tract infections research
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant-Microbe Interactions and Immunity
- Keywords
- Lactobacillus plantarum, probiotic lactic acid bacteria, jaggery, bile tolerance, acid resistance, cell adhesion, exopolysaccharide production, folate biosynthesis, riboflavin biosynthesis, glucansucrase, bacteriocin production, antimicrobial activity, comparative genomics
- MeSH terms
- Whole Genome Sequencing, Fermented Foods, Bacterial Adhesion, DNA, Bacterial, Food Microbiology, Genotype, Humans, India, Phenotype, Phylogeny, Plant Extracts, Gene Expression Regulation, Bacterial, HT29 Cells, Probiotics, Genomics, Lactiplantibacillus plantarum
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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