SOX5 postmitotically regulates migration, postmigratory differentiation, and projections of subplate and deep-layer neocortical neurons
Open accessAbstract
Neocortical projection neurons exhibit layer-specific molecular profiles and axonal connections. Here we show that the molecular identities of early-born subplate and deep-layer neurons are not acquired solely during generation or shortly thereafter but undergo progressive postmitotic refinement mediated by SOX5. Fezf2 and Bcl11b , transiently expressed in all subtypes of newly postmigratory early-born neurons, are subsequently downregulated in layer 6 and subplate neurons, thereby establishing their layer 5-enriched postnatal patterns. In Sox5 -null mice, this downregulation is disrupted, and layer 6 and subplate neurons maintain an immature differentiation state, abnormally expressing these genes postnatally. Consistent with this disruption, SOX5 binds and represses a conserved enhancer near Fezf2 . The Sox5 -null neocortex exhibits failed preplate partition and laminar inversion of early-born neurons, loss of layer 5 subcerebral axons, and misrouting of subplate and layer 6 corticothalamic axons to the hypothalamus. Thus, SOX5 postmitotically regulates the migration, postmigratory differentiation, and subcortical projections of subplate and deep-layer neurons.
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SOX5 has a known role in mammalian corticogenesis.
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From Genome-wide changes in lncRNA, splicing, and regional gene expression patterns in autism (2016) · cites this paper as [23]
The observed transcriptome changes are consistent with an ongoing process triggered largely by genetic and prenatal factors but evolving during the first decade of brain development.
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From Genome-wide changes in lncRNA, splicing, and regional gene expression patterns in autism (2016) · cites this paper as [23]
Cites
Stöckl, S., Göttl, C., Grifka, J. K., & Grässel, S. (2013) · Cellular Physiology and Biochemistry · doi:10.1159/000350089 · Cited by 4,670 · see citing works
A gene expression atlas of the central nervous system based on bacterial artificial chromosomes
Gong, S., Zheng, C., Doughty, M. L., Losos, K., Didkovsky, N., Schambra, U. B., Nowak, N. J., Joyner, A., Leblanc, G., Hatten, M. E., et al. (2003) · Nature · doi:10.1038/nature02033 · Cited by 2,108 · see citing works
Neuronal specification in the spinal cord: inductive signals and transcriptional codes
Jessell, T. M. (2000) · Nature Reviews Genetics · doi:10.1038/35049541 · Cited by 2,089 · see citing works
Neuronal subtype specification in the cerebral cortex
Molyneaux, B. J., Arlotta, P., Menezes, J. R. L., & Macklis, J. D. (2007) · Nature reviews. Neuroscience · doi:10.1038/nrn2151 · Cited by 1,632 · see citing works
Autoradiographic Study of Cell Migration during Histogenesis of Cerebral Cortex in the Mouse
ANGEVINE, J. B., & SIDMAN, R. L. (1961) · Nature · doi:10.1038/192766b0 · Cited by 1,530 · see citing works
In vivo enhancer analysis of human conserved non-coding sequences
Pennacchio, L. A., Ahituv, N., Moses, A. M., Prabhakar, S., Nobrega, M. A., Shoukry, M., Minovitsky, S., Dubchak, I., Holt, A., Lewis, K. D., et al. (2006) · Nature · doi:10.1038/nature05295 · Cited by 1,165 · see citing works
Rakic, P. (1974) · Science · doi:10.1126/science.183.4123.425 · Cited by 1,161 · see citing works
Neuronal Subtype-Specific Genes that Control Corticospinal Motor Neuron Development In Vivo
Arlotta, P., Molyneaux, B. J., Chen, J., Inoue, J., Kominami, R., & Macklis, J. D. (2005) · Neuron · doi:10.1016/j.neuron.2004.12.036 · Cited by 1,157 · see citing works
Bittencourt, J. C., Presse, F., Arias, C. M., Peto, C. A., Vaughan, J. M., Nahon, J., Vale, W., & Sawchenko, P. E. (1992) · The Journal of Comparative Neurology · doi:10.1002/cne.903190204 · Cited by 1,075 · see citing works
Kostović, I., & RAKIC, P. T. (1990) · The Journal of Comparative Neurology · doi:10.1002/cne.902970309 · Cited by 912 · see citing works
Tbr1 regulates differentiation of the preplate and layer 6
Hevner, R. F., Shi, L., Justice, N., Hsueh, Y.-P., Sheng, M., Smiga, S., Bulfone, A., Goffinet, A. M., Campagnoni, A. T., & Rubenstein, J. L. R. (2001) · Neuron · doi:10.1016/s0896-6273(01)00211-2 · Cited by 857 · see citing works
Satb2 Is a Postmitotic Determinant for Upper-Layer Neuron Specification in the Neocortex
Britanova, O., de Juan Romero, C., Cheung, A., Kwan, K. Y., Schwark, M., Gyorgy, A., Vogel, T., Akopov, S., Mitkovski, M., Agoston, D., et al. (2008) · Neuron · doi:10.1016/j.neuron.2007.12.028 · Cited by 674 · see citing works
Self-citationRole of the Reelin Signaling Pathway in Central Nervous System Development
Rice, D. S., & Curran, T. (2001) · Annual Review of Neuroscience · doi:10.1146/annurev.neuro.24.1.1005 · Cited by 667 · see citing works
Satb2 Regulates Callosal Projection Neuron Identity in the Developing Cerebral Cortex
Alcamo, E. A., Chirivella, L., Dautzenberg, M., Dobreva, G., Fariñas, I., Grosschedl, R., & McConnell, S. K. (2008) · Neuron · doi:10.1016/j.neuron.2007.12.012 · Cited by 658 · see citing works
Subplate Neurons Pioneer the First Axon Pathway from the Cerebral Cortex
McConnell, S. K., Ghosh, A., & Shatz, C. J. (1989) · Science · doi:10.1126/science.2475909 · Cited by 647 · see citing works
Caviness, V. S. (1982) · Developmental Brain Research · doi:10.1016/0165-3806(82)90141-9 · Cited by 639 · see citing works
The Transcription Factors L-Sox5 and Sox6 Are Essential for Cartilage Formation
Smits, P. J., Li, P., Mandel, J., Zhang, Z., Deng, J. M., Behringer, R. R., Crombrugghe, B. D., & Lefèbvre, V. (2001) · Developmental Cell · doi:10.1016/s1534-5807(01)00003-x · Cited by 600 · see citing works
Nieto, M., Monuki, E. S., Tang, H., Imitola, J., Haubst, N., Khoury, S. J., Cunningham, J., Götz, M., & Walsh, C. A. (2004) · The Journal of Comparative Neurology · doi:10.1002/cne.20322 · Cited by 548 · see citing works
Dual origin of the mammalian neocortex and evolution of the cortical plate
Marín‐Padilla, M. (1978) · Anatomy and Embryology · doi:10.1007/bf00315920 · Cited by 508 · see citing works
Fezl Is Required for the Birth and Specification of Corticospinal Motor Neurons
Molyneaux, B. J., Arlotta, P., Hirata, T., Hibi, M., & Macklis, J. D. (2005) · Neuron · doi:10.1016/j.neuron.2005.08.030 · Cited by 481 · see citing works
Lefebvre, V., Dumitriu, B., Penzo‐Méndez, A., Han, Y., & Bhattaram, P. (2007) · The International Journal of Biochemistry & Cell Biology · doi:10.1016/j.biocel.2007.05.019 · Cited by 466 · see citing works
Self-citationThe Neostriatal Mosaic: Striatal Patch-Matrix Organization Is Related to Cortical Lamination
Gerfen, C. R. (1989) · Science · doi:10.1126/science.2799392 · Cited by 453 · see citing works
Constructing the cerebral cortex: Neurogenesis and fate determination
McConnell, S. K. (1995) · Neuron · doi:10.1016/0896-6273(95)90168-x · Cited by 416 · see citing works
O’Leary, D. D. M., & Koester, S. E. (1993) · Neuron · doi:10.1016/0896-6273(93)90049-w · Cited by 361 · see citing works
Chen, B., Schaevitz, L. R., & McConnell, S. K. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0508732102 · Cited by 353 · see citing works
Rašin, M.-R., Gazula, V., Breunig, J. J., Kwan, K. Y., Johnson, M. B., Liu‐Chen, S., Li, H.-S., Jan, L. Y., Jan, Y. N., RAKIC, P. T., et al. (2007) · Nature Neuroscience · doi:10.1038/nn1924 · Cited by 316 · see citing works
Self-citationSOX5 Controls the Sequential Generation of Distinct Corticofugal Neuron Subtypes
Lai, T. S., Jabaudon, D., Molyneaux, B. J., Azim, E., Arlotta, P., Menezes, J. R. L., & Macklis, J. D. (2008) · Neuron · doi:10.1016/j.neuron.2007.12.023 · Cited by 300 · see citing works
Stolt, C. C., Schlierf, A., Lommes, P., Hillgärtner, S., Werner, T., Kosian, T., Sock, E., Kessaris, N., Richardson, W. D., Lefebvre, V., et al. (2006) · Developmental Cell · doi:10.1016/j.devcel.2006.08.011 · Cited by 299 · see citing works
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McEvilly, R. J., de Diaz, M. O., Schonemann, M. D., Hooshmand, F., & Rosenfeld, M. G. (2002) · Science · doi:10.1126/science.1067132 · Cited by 271 · see citing works
Chen, J.-G., Rašin, M.-R., Kwan, K. Y., & Šestan, N. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0509032102 · Cited by 246 · see citing works
Self-citationArea and layer patterning in the developing cerebral cortex
Rash, B. G., & Grove, E. A. (2006) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2006.01.004 · Cited by 169 · see citing works
Nakagawa, Y., & O’Leary, D. D. M. (2003) · Developmental Neuroscience · doi:10.1159/000072271 · Cited by 121 · see citing works
Jacobs, E. C., Campagnoni, C. W., Kampf, K., Reyes, S. D., Kalra, V., Handley, V., Xie, Y., Hong‐Hu, Y., Spreuer, V., Fisher, R. S., et al. (2007) · European Journal of Neuroscience · doi:10.1111/j.1460-9568.2006.05258.x · Cited by 112 · see citing works
Er81 is expressed in a subpopulation of layer 5 neurons in rodent and primate neocortices
Yoneshima, H., Yamasaki, S., Voelker, C., Molnár, Z., Christophe, E., Audinat, É., Takemoto, M., Nishiwaki, M., Tsuji, S., Fujita, I., et al. (2005) · Neuroscience · doi:10.1016/j.neuroscience.2005.08.075 · Cited by 105 · see citing works
Connective tissue growth factor: a novel marker of layer vii neurons in the rat cerebral cortex
Heuer, H., Christ, S., Friedrichsen, S., Brauer, D., Winckler, M., Bauer, K., & Raivich, G. (2003) · Neuroscience · doi:10.1016/s0306-4522(03)00100-3 · Cited by 83 · see citing works
Iwasato, T., Inan, M., Kanki, H., Erzurumlu, R. S., Itohara, S., & Crair, M. C. (2008) · Journal of Neuroscience · doi:10.1523/jneurosci.0815-08.2008 · Cited by 78 · see citing works
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Silbereis, J. C., Pochareddy, S., Zhu, Y., Li, M., & Sestan, N. (2016) · Neuron · doi:10.1016/j.neuron.2015.12.008 · Cited by 818 · see citing works
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“Among the transcription factors identified, SOX5 was of particular interest because of its known role in mammalian corticogenesis 23,24 , its sole membership in the ACP set, and its correlation with predicted targets in the brains of control subjects, which is lost in ASD (Fig.”
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Bilgüvar, K., Öztürk, A. K., Louvi, A., Kwan, K. Y., Choi, M., Tatlı, B., Yalnızoğlu, D., Tüysüz, B., Çağlayan, A. O., Gökben, S., et al. (2010) · Nature · doi:10.1038/nature09327 · Cited by 503 · see citing works
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Bedogni, F., Hodge, R. D., Elsen, G. E., Nelson, B. R., Daza, R. A. M., Beyer, R. P., Bammler, T. K., Rubenstein, J. L. R., & Hevner, R. F. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1002285107 · Cited by 322 · see citing works
McKenna, W. L., Betancourt, J., Larkin, K. A., Abrams, B., Guo, C., Rubenstein, J. L. R., & Chen, B. (2011) · The Journal of Neuroscience · doi:10.1523/jneurosci.4131-10.2011 · Cited by 252 · see citing works
Han, W., Kwan, K. Y., Shim, S., Lam, M. M. S., Shin, Y., Xu, X., Zhu, Y., Li, M., & Šestan, N. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1016723108 · Cited by 206 · see citing works
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Shim, S., Kwan, K. Y., Li, M., Lefebvre, V., & Šestan, N. (2012) · Nature · doi:10.1038/nature11094 · Cited by 183 · see citing works
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Lamb, A. N., Rosenfeld, J. A., Neill, N. J., Talkowski, M. E., Blumenthal, I., Girirajan, S., Keelean-Fuller, D., Fan, Z., Pouncey, J., Stevens, C., et al. (2012) · Human Mutation · doi:10.1002/humu.22037 · Cited by 107 · see citing works
Fertuzinhos, S., Krsnik, Ž., Kawasawa, Y. I., Rašin, M.-R., Kwan, K. Y., Chen, J.-G., Judaš, M., Hayashi, M., & Šestan, N. (2009) · Cerebral Cortex · doi:10.1093/cercor/bhp009 · Cited by 106 · see citing works
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Ip, B. K., Bayatti, N., Howard, N. J., Lindsay, S., & Clowry, G. J. (2011) · Cerebral Cortex · doi:10.1093/cercor/bhq219 · Cited by 58 · see citing works
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- Authors
- Kwan, K. Y., Lam, M. M. S., Krsnik, Ž., Kawasawa, Y. I., Lefebvre, V., & Šestan, N.
- Affiliations
- Yale University (US)
- Department of Cell Biology and Orthopaedic Research Center, Lerner Research Institute, Cleveland Clinic, Cleveland, OH 44195
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2008-10-14
- Volume
- 105
- Issue
- 41
- Pages
- 16021-16026
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC2572944
- OpenAlex
- W1985705162
- Cited by
- 271
- References
- 36
- Citations by year
- 2026: 6 · 2025: 9 · 2024: 15 · 2023: 14 · 2022: 13 · 2021: 18 · 2020: 14 · 2019: 14 · 2018: 10 · 2017: 14 · 2016: 22 · 2015: 19 · 2014: 19 · 2013: 26 · 2012: 14
- FWCI
- 4.49
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- March of Dimes Foundation
- Whitehall Foundation
- Cincinnati Children's Hospital Medical Center
- National Institutes of Health
- Canadian Institutes of Health Research
- RIKEN
- National Institute of Neurological Disorders and Stroke (R01NS054273, NS 054273)
- RIKEN Brain Science Institute
- Topics
- Life Sciences › Neuroscience › Developmental Neuroscience › Neurogenesis and neuroplasticity mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Axon Guidance and Neuronal Signaling
- Keywords
- SOX5, neuronal migration, subplate neurons, Fezf2, BCL11B, enhancer repression, cortical lamination, neocortex development
- MeSH terms
- Animals, Cell Differentiation, Cell Movement, DNA-Binding Proteins, Mitosis, Neurons, Repressor Proteins, Down-Regulation, Cell Adhesion Molecules, Mice, Knockout, Neocortex, Cell Surface Extensions, Tumor Suppressor Proteins, Mice, SOXD Transcription Factors
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