The intestinal microbiota in inflammatory bowel disease
Abstract
The intestinal microbiota has important metabolic and host-protective functions. Conversely to these beneficial functions, the intestinal microbiota is thought to play a central role in the etiopathogenesis of inflammatory bowel disease (IBD; Crohn's disease and ulcerative colitis), a chronic inflammation of the gut mucosa. Genetic screens and studies in experimental mouse models have clearly demonstrated that IBD can develop due to excessive translocation of bacteria into the bowel wall or dysregulated handling of bacteria in genetically susceptible hosts. In healthy individuals, the microbiota is efficiently separated from the mucosal immune system of the gut by the gut barrier, a single layer of highly specialized epithelial cells, some of which are equipped with innate immune functions to prevent or control access of bacterial antigens to the mucosal immune cells. It is currently unclear whether the composition of the microbial flora or individual bacterial strains or pathogens induces or supports the pathogenesis of IBD. Further research will be necessary to carefully dissect the contribution of individual bacterial species to this disease and to ascertain whether specific modulation of the intestinal microbiome may represent a valuable further option for future therapeutic strategies.
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The gastrointestinal tract is constantly confronted with food antigens, possible pathogens, and symbiotic intestinal microbiota that present a risk factor for intestinal inflammation.
“The gastrointestinal tract is constantly confronted with food antigens, possible pathogens, and symbiotic intestinal microbiota that present a risk factor for intestinal inflammation (63).”
From Vagus Nerve as Modulator of the Brain–Gut Axis in Psychiatric and Inflammatory Disorders (2018) · cites this paper as [63]
Cites
A human gut microbial gene catalogue established by metagenomic sequencing
MetaHIT Consortium, Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K. S., Manichanh, C., Nielsen, T., Pons, N., Levenez, F., et al. (2010) · Nature · doi:10.1038/nature08821 · Cited by 11,624 · see citing works
Human gut microbes associated with obesity
Ley, R. E., Turnbaugh, P. J., Klein, S., & Gordon, J. I. (2006) · Nature · doi:10.1038/4441022a · Cited by 8,785 · see citing works
Diversity of the Human Intestinal Microbial Flora
Eckburg, P. B., Bik, E. M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S. R., Nelson, K. E., & Relman, D. A. (2005) · Science · doi:10.1126/science.1110591 · Cited by 7,913 · see citing works
A core gut microbiome in obese and lean twins
Turnbaugh, P. J., Hamady, M., Yatsunenko, T., Cantarel, B. L., Duncan, A., Ley, R. E., Sogin, M. L., Jones, W. J., Roe, B. A., Affourtit, J. P., et al. (2009) · Nature · doi:10.1038/nature07540 · Cited by 7,823 · see citing works
Human gut microbiome viewed across age and geography
Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G., Contreras, M., Magris, M., Hidalgo, G., Baldassano, R. N., Anokhin, A. P., et al. (2012) · Nature · doi:10.1038/nature11053 · Cited by 7,815 · see citing works
Enterotypes of the human gut microbiome
MetaHIT Consortium (additional members), Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, T., Mende, D. R., Fernandes, G. R., Tap, J., Bruls, T., et al. (2011) · Nature · doi:10.1038/nature09944 · Cited by 7,548 · see citing works
Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease
Hugot, J.-P., Chamaillard, M., Zouali, H., Lesage, S., Cézard, J.-P., Belaiche, J., Almer, S., Tysk, C., O'Morain, C. A., Gassull, M., et al. (2001) · Nature · doi:10.1038/35079107 · Cited by 5,591 · see citing works
Diversity, stability and resilience of the human gut microbiota
Lozupone, C. A., Stombaugh, J. I., Gordon, J. I., Jansson, J. K., & Knight, R. (2012) · Nature · doi:10.1038/nature11550 · Cited by 5,533 · see citing works
Diarrheagenic Escherichia coli
Nataro, J. P., & Kaper, J. B. (1998) · Clinical Microbiology Reviews · doi:10.1128/cmr.11.1.142 · Cited by 5,109 · see citing works
A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease
Ogura, Y., Bonen, D. K., Inohara, N., Nicolae, D. L., Chen, F. F., Ramos, R., Britton, H., Moran, T., Karaliuskas, R., Duerr, R. H., et al. (2001) · Nature · doi:10.1038/35079114 · Cited by 5,030 · see citing works
Dominguez-Bello, M. G., Costello, E. K., Contreras, M., Magris, M., Hidalgo, G., Fierer, N., & Knight, R. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1002601107 · Cited by 4,774 · see citing works
Host-gut microbiota metabolic interactions
Nicholson, J. K., Holmes, E., Kinross, J., Burcelin, R., Gibson, G., Jia, W., & Pettersson, S. (2012) · Science · doi:10.1126/science.1223813 · Cited by 4,760 · see citing works
Host–microbe interactions have shaped the genetic architecture of inflammatory bowel disease
The International IBD Genetics Consortium (IIBDGC), Jostins, L., Ripke, S., Weersma, R. K., Duerr, R. H., McGovern, D. P., Hui, K. Y., Lee, J. C., Philip Schumm, L., Sharma, Y., et al. (2012) · Nature · doi:10.1038/nature11582 · Cited by 4,722 · see citing works
Richness of human gut microbiome correlates with metabolic markers
Le Chatelier, E., Nielsen, T., Qin, J., Prifti, E., Hildebrand, F., Falony, G., Almeida, M., Arumugam, M., Batto, J.-M., Kennedy, S., et al. (2013) · Nature · doi:10.1038/nature12506 · Cited by 4,662 · see citing works
Frank, D. N., St. Amand, A. L., Feldman, R. A., Boedeker, E. C., Harpaz, N., & Pace, N. R. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0706625104 · Cited by 4,611 · see citing works
Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria
Ivanov, I. I., Atarashi, K., Manel, N., Brodie, E. L., Shima, T., Karaoz, U., Wei, D., Goldfarb, K. C., Santee, C. A., Lynch, S. V., et al. (2009) · Cell · doi:10.1016/j.cell.2009.09.033 · Cited by 4,554 · see citing works
The Treatment-Naive Microbiome in New-Onset Crohn’s Disease
Gevers, D., Kugathasan, S., Denson, L. A., Vázquez-Baeza, Y., Van Treuren, W., Ren, B., Schwager, E., Knights, D., Song, S. J., Yassour, M., et al. (2014) · Cell Host & Microbe · doi:10.1016/j.chom.2014.02.005 · Cited by 3,220 · see citing works
Podolsky, D. K. (2002) · New England Journal of Medicine · doi:10.1056/nejmra020831 · Cited by 3,183 · see citing works
A Genome-Wide Association Study Identifies <i>IL23R</i> as an Inflammatory Bowel Disease Gene
Duerr, R. H., Taylor, K. D., Brant, S. R., Rioux, J. D., Silverberg, M. S., Daly, M. J., Steinhart, A. H., Abraham, C., Regueiro, M., Griffiths, A., et al. (2006) · Science · doi:10.1126/science.1135245 · Cited by 3,039 · see citing works
Development of the Human Infant Intestinal Microbiota
Palmer, C., Bik, E. M., DiGiulio, D. B., Relman, D. A., & Brown, P. O. (2007) · PLoS Biology · doi:10.1371/journal.pbio.0050177 · Cited by 2,877 · see citing works
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
Morgan, X. C., Tickle, T. L., Sokol, H., Gevers, D., Devaney, K. L., Ward, D. V., Reyes, J. A., Shah, S. A., LeLeiko, N., Snapper, S. B., et al. (2012) · Genome Biology · doi:10.1186/gb-2012-13-9-r79 · Cited by 2,713 · see citing works
Succession of microbial consortia in the developing infant gut microbiome
Koenig, J. E., Spor, A., Scalfone, N., Fricker, A. D., Stombaugh, J., Knight, R., Angenent, L. T., & Ley, R. E. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000081107 · Cited by 2,540 · see citing works
Reduced diversity of faecal microbiota in Crohn’s disease revealed by a metagenomic approach
Manichanh, C., Rigottier-Gois, L., Bonnaud, E., Gloux, K., Pelletier, E., Frangeul, L., Nalin, R., Jarrin, C., Chardon, P., Marteau, P., et al. (2006) · Gut · doi:10.1136/gut.2005.073817 · Cited by 2,277 · see citing works
Role of the gut microbiota in immunity and inflammatory disease
Kamada, N., Seo, S.-U., Chen, G. Y., & Núñez, G. (2013) · Nature reviews. Immunology · doi:10.1038/nri3430 · Cited by 2,256 · see citing works
Gutierrez, M. G., Master, S. S., Singh, S. B., Taylor, G. A., Colombo, M. I., & Deretic, V. (2004) · Cell · doi:10.1016/j.cell.2004.11.038 · Cited by 2,252 · see citing works
The Long-Term Stability of the Human Gut Microbiota
Faith, J. J., Guruge, J. L., Charbonneau, M., Subramanian, S., Seedorf, H., Goodman, A. L., Clemente, J. C., Knight, R., Heath, A. C., Leibel, R. L., et al. (2013) · Science · doi:10.1126/science.1237439 · Cited by 2,058 · see citing works
Hampe, J., Franke, A., Rosenstiel, P. C., Till, A., Teuber, M., Huse, K., Albrecht, M., Gabriele Mayr, B., Vega, F. M. D. L., Briggs, J. C., et al. (2006) · Nature Genetics · doi:10.1038/ng1954 · Cited by 1,899 · see citing works
The Microbiome in Inflammatory Bowel Disease: Current Status and the Future Ahead
Kostic, A. D., Xavier, R. J., & Gevers, D. (2014) · Gastroenterology · doi:10.1053/j.gastro.2014.02.009 · Cited by 1,789 · see citing works
A key role for autophagy and the autophagy gene Atg16l1 in mouse and human intestinal Paneth cells
Cadwell, K., Liu, J. Y., Brown, S. L., Miyoshi, H., Loh, J., Lennerz, J. K., Kishi, C., Kc, W., Carrero, J. A., Hunt, S., et al. (2008) · Nature · doi:10.1038/nature07416 · Cited by 1,542 · see citing works
Moayyedi, P., Surette, M. G., Kim, P. T., Libertucci, J., Wolfe, M., Onischi, C., Armstrong, D., Marshall, J. K., Kassam, Z., Reinisch, W., et al. (2015) · Gastroenterology · doi:10.1053/j.gastro.2015.04.001 · Cited by 1,499 · see citing works
Gionchetti, P., Rizzello, F., Venturi, A., Brigidi, P., Matteuzzi, D., Bazzocchi, G., Poggioli, G., Miglioli, M., & Campieri, M. (2000) · Gastroenterology · doi:10.1053/gast.2000.9370 · Cited by 1,485 · see citing works
Sellon, R. K., Tonkonogy, S., Schultz, M., Dieleman, L. A., Grenther, W., Balish, E., Rennick, D. M., & Sartor, R. B. (1998) · Infection and Immunity · doi:10.1128/iai.66.11.5224-5231.1998 · Cited by 1,483 · see citing works
Nod2, a Nod1/Apaf-1 Family Member That Is Restricted to Monocytes and Activates NF-κB
Ogura, Y., Inohara, N., Benito, A., Chen, F. F., Yamaoka, S., & Núñez, G. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m008072200 · Cited by 1,357 · see citing works
The fundamental basis of inflammatory bowel disease
Strober, W., Fuss, I. J., & Mannon, P. (2007) · Journal of Clinical Investigation · doi:10.1172/jci30587 · Cited by 1,310 · see citing works
Taurog, J. D., Richardson, J. A., Croft, J. T., Simmons, W. A., Zhou, M., FERNÁNDEZ-SUEIRO, J. L., Balish, E., & Hammer, R. E. (1994) · The Journal of Experimental Medicine · doi:10.1084/jem.180.6.2359 · Cited by 1,156 · see citing works
Prophylaxis of pouchitis onset with probiotic therapy: a double-blind, placebo-controlled trial
Gionchetti, P., Rizzello, F., Helwig, U., Venturi, A., Lammers, K. M., Brigidi, P., Vitali, B., Poggioli, G., Miglioli, M., & Campieri, M. (2003) · Gastroenterology · doi:10.1016/s0016-5085(03)00171-9 · Cited by 1,147 · see citing works
Epithelial NEMO links innate immunity to chronic intestinal inflammation
Nenci, A., Becker, C., Wullaert, A., Gareus, R., Loo, G., Danese, S., Huth, M., Nikolaev, A., Neufert, C. F., Madison, B., et al. (2007) · Nature · doi:10.1038/nature05698 · Cited by 1,077 · see citing works
Self-citationSartor, R. B. (2004) · Gastroenterology · doi:10.1053/j.gastro.2004.03.024 · Cited by 1,053 · see citing works
Reduced Paneth cell α-defensins in ileal Crohn's disease
Wehkamp, J., Salzman, N. H., Porter, E. M., Nuding, S., Weichenthal, M., Petras, R. E., Shen, B., Schaeffeler, E., Schwab, M. G., Linzmeier, R. M., et al. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0505256102 · Cited by 988 · see citing works
Ubeda, C., Taur, Y., Jenq, R. R., Equinda, M. J., Son, T., Samstein, M., Viale, A., Socci, N. D., van den Brink, M. R. M., Kamboj, M., et al. (2010) · Journal of Clinical Investigation · doi:10.1172/jci43918 · Cited by 943 · see citing works
Rossen, N. G., Fuentes, S., van der Spek, M. J., Tijssen, J. G., Hartman, J. H. A., Duflou, A., Löwenberg, M., van den Brink, G. R., Mathus-Vliegen, E. M. H., de Vos, W. M., et al. (2015) · Gastroenterology · doi:10.1053/j.gastro.2015.03.045 · Cited by 921 · see citing works
Communicable Ulcerative Colitis Induced by T-bet Deficiency in the Innate Immune System
Garrett, W. S., Lord, G. M., Punit, S., Lugo‐Villarino, G., Mazmanian, S. K., Ito, S., Glickman, J. N., & Glimcher, L. H. (2007) · Cell · doi:10.1016/j.cell.2007.08.017 · Cited by 918 · see citing works
Mimura, T., Rizzello, F., Helwig, U., Poggioli, G., Schreiber, S., Talbot, I. C., Nicholls, R. J., Gionchetti, P., Campieri, M., & Kamm, M. A. (2003) · Gut · doi:10.1136/gut.53.1.108 · Cited by 912 · see citing works
Cadwell, K., Patel, K., Maloney, N. S., Liu, T., Ng, A., Storer, C. E., Head, R. D., Xavier, R. J., Stappenbeck, T. S., & Virgin, H. W. (2010) · Cell · doi:10.1016/j.cell.2010.05.009 · Cited by 897 · see citing works
Caspase-8 regulates TNF-α-induced epithelial necroptosis and terminal ileitis
Günther, C., Martini, E., Wittkopf, N., Amann, K., Weigmann, B., Neumann, H., Waldner, M. J., Hedrick, S. Μ., Tenzer, S., Neurath, M. F., et al. (2011) · Nature · doi:10.1038/nature10400 · Cited by 882 · see citing works
Self-citationPresence of adherent Escherichia coli strains in ileal mucosa of patients with Crohn's disease
Darfeuille–Michaud, A., Neut, C., Barnich, N., Lederman, E., Martino, P. D., Desreumaux, P., Gambiez, L. P., Joly, B., Cortot, A., & Colombel, J.-F. (1998) · Gastroenterology · doi:10.1016/s0016-5085(98)70019-8 · Cited by 859 · see citing works
NOD2 is a negative regulator of Toll-like receptor 2–mediated T helper type 1 responses
Watanabe, T., Kitani, A., Murray, P. J., & Strober, W. (2004) · Nature Immunology · doi:10.1038/ni1092 · Cited by 839 · see citing works
Rath, H. C., Herfarth, H. H., Ikeda, J. S., Grenther, W. B., Hamm, T. E., Balish, E., Taurog, J. D., Hammer, R. E., Wilson, K. H., & Sartor, R. B. (1996) · Journal of Clinical Investigation · doi:10.1172/jci118878 · Cited by 833 · see citing works
Garrett, W. S., Gallini, C. A., Yatsunenko, T., Michaud, M., DuBois, A., Delaney, M. L., Punit, S., Karlsson, M., Bry, L., Glickman, J. N., et al. (2010) · Cell Host & Microbe · doi:10.1016/j.chom.2010.08.004 · Cited by 788 · see citing works
Lactobacillus species prevents colitis in interleukin 10 gene–deficient mice
Madsen, K. L., Doyle, J. S. G., Jewell, L. D., Tavernini, M. M., & Fedorak, R. N. (1999) · Gastroenterology · doi:10.1016/s0016-5085(99)70013-2 · Cited by 761 · see citing works
Effect of faecal stream diversion on recurrence of Crohn's disease in the neoterminal ileum
Rutgeerts, P., Peeters, M., Hiele, M. I., Vantrappen, G. R., Pennincx, F., Aerts, R., Kerremans, R., & Goboes, K. (1991) · The Lancet · doi:10.1016/0140-6736(91)90663-a · Cited by 758 · see citing works
Walker, A. W., Sanderson, J. D., Churcher, C. M., Parkes, G. C., Hudspith, B. N., Rayment, N. B., Brostoff, J., Parkhill, J., Dougan, G., & Petrovska, L. (2011) · BMC Microbiology · doi:10.1186/1471-2180-11-7 · Cited by 727 · see citing works
Saccharomyces boulardii in Maintenance Treatment of Crohn’s Disease
Guslandi, M., Mezzi, G., Sorghi, M., & Testoni, P. A. (2000) · Digestive Diseases and Sciences · doi:10.1023/a:1005588911207 · Cited by 722 · see citing works
Naser, S. A., Ghobrial, G., Romero, C., & Valentine, J. F. (2004) · The Lancet · doi:10.1016/s0140-6736(04)17058-x · Cited by 625 · see citing works
Gut microbiota disturbance during antibiotic therapy: a multi-omic approach
Pérez‐Cobas, A. E., Gosalbes, M. J., Friedrichs, A. K., Knecht, H., Artacho, A., Eismann, K., Otto, W., Rojo, D., Bargiela, R., von Bergen�, M., et al. (2012) · Gut · doi:10.1136/gutjnl-2012-303184 · Cited by 603 · see citing works
Frank, D. N., Robertson, C. E., Hamm, C. M., Kpadeh, Z. Z., Zhang, T., Chen, H., Zhu, W., Sartor, R. B., Boedeker, E. C., Harpaz, N., et al. (2010) · Inflammatory Bowel Diseases · doi:10.1002/ibd.21339 · Cited by 594 · see citing works
Impact of Clostridium difficile on Inflammatory Bowel Disease
Issa, M., Vijayapal, A., Graham, M. B., Beaulieu, D. B., Otterson, M. F., Lundeen, S. J., Skaros, S., Weber, L. R., KOMOROWSKI, R. A., Knox, J. F., et al. (2007) · Clinical Gastroenterology and Hepatology · doi:10.1016/j.cgh.2006.12.028 · Cited by 570 · see citing works
Nod2 is required for the regulation of commensal microbiota in the intestine
Petnicki-Ocwieja, T., Hrncir, T., Liu, Y.-J., Biswas, A., Hudcovic, T., Tlaskalova-Hogenova, H., & Kobayashi, K. S. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0907722106 · Cited by 564 · see citing works
Sood, A., Midha, V., Makharia, G. K., Ahuja, V., Singal, D., Goswami, P., & Tandon, R. K. (2009) · Clinical Gastroenterology and Hepatology · doi:10.1016/j.cgh.2009.07.016 · Cited by 513 · see citing works
Mouse models of inflammatory bowel disease☆
Wirtz, S. J., & Neurath, M. F. (2007) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2007.07.003 · Cited by 508 · see citing works
Self-citationTursi, A., Brandimarte, G., Papa, A., Giglio, A., Elisei, W., Giorgetti, G. M., Forti, G., Morini, S., Hassan, C., Pistoia, M. A., et al. (2010) · American Journal of Gastroenterology · doi:10.1038/ajg.2010.218 · Cited by 489 · cited 1× · see citing works
“In several studies using VSL#3, treatment of patients with mild to moderate UC resulted in a combined induction of remission/response rate with no severe adverse effects (Sood et al. 2009; Tursi et al. 2010).”
Colman, R. J., & Rubin, D. T. (2014) · Journal of Crohn's and Colitis · doi:10.1016/j.crohns.2014.08.006 · Cited by 475 · see citing works
Lindsay, J. O. (2006) · Gut · doi:10.1136/gut.2005.074971 · Cited by 471 · see citing works
Genetic variation in DLG5 is associated with inflammatory bowel disease
Stoll, M., Corneliussen, B., Costello, C. M., Waetzig, G. H., Mellgård, B., Koch, W. A., Rosenstiel, P. C., Albrecht, M., Croucher, P. J. P., Seegert, D., et al. (2004) · Nature Genetics · doi:10.1038/ng1345 · Cited by 469 · see citing works
Kullberg, M. C., Ward, J. M., Gorelick, P. L., Caspar, P., Hieny, S. E., Cheever, A. W., Jankovic, D. L., & Sher, A. (1998) · Infection and Immunity · doi:10.1128/iai.66.11.5157-5166.1998 · Cited by 456 · see citing works
Cammarota, G., Ianiro, G., & Gasbarrini, A. (2014) · Journal of Clinical Gastroenterology · doi:10.1097/mcg.0000000000000046 · Cited by 428 · see citing works
Fisher, S. A., Tremelling, M., Anderson, C. A., Gwilliam, R., Bumpstead, S., Prescott, N. J., Nimmo, E. R., Massey, D. C. O., Berzuini, C., Johnson, C., et al. (2008) · Nature Genetics · doi:10.1038/ng.145 · Cited by 424 · see citing works
Gradel, K. O., Nielsen, H. L., Schønheyder, H. C., Ejlertsen, T., Kristensen, B., & Nielsen, H. (2009) · Gastroenterology · doi:10.1053/j.gastro.2009.04.001 · Cited by 424 · see citing works
Crohn's Disease and Escherichia coli
Malchow, H. A. (1997) · Journal of Clinical Gastroenterology · doi:10.1097/00004836-199712000-00021 · Cited by 402 · see citing works
Martínez-Medina, M., Aldeguer, X., López‐Siles, M., Gónzalez‐Huix, F., López-Oliu, C., Dahbi, G., Blanco, J. E., Blanco, J., Garcia-Gil, L. J., & Darfeuille–Michaud, A. (2009) · Inflammatory Bowel Diseases · doi:10.1002/ibd.20860 · Cited by 398 · see citing works
The impact of the microbiota on the pathogenesis of IBD: lessons from mouse infection models
Nell, S., Suerbaum, S., & Josenhans, C. (2010) · Nature Reviews Microbiology · doi:10.1038/nrmicro2403 · Cited by 396 · see citing works
Schultz, M., Veltkamp, C., Dieleman, L. A., Grenther, W. B., Wyrick, P. B., Tonkonogy, S. L., & Sartor, R. B. (2002) · Inflammatory Bowel Diseases · doi:10.1097/00054725-200203000-00001 · Cited by 375 · see citing works
Mycobacterium paratuberculosis DNA in Crohn's disease tissue.
Sanderson, J. D., MOSS, M. T., Tizard, M. L., & Hermon-Taylor, J. (1992) · Gut · doi:10.1136/gut.33.7.890 · Cited by 368 · see citing works
Kang, S., Denman, S. E., Morrison, M., Yu, Z., Dore, J. M., Leclerc, M., & McSweeney, C. S. (2010) · Inflammatory Bowel Diseases · doi:10.1002/ibd.21319 · Cited by 365 · see citing works
Hold, G. L. (2014) · World Journal of Gastroenterology · doi:10.3748/wjg.v20.i5.1192 · Cited by 365 · see citing works
NOD2 and Toll-Like Receptors Are Nonredundant Recognition Systems of Mycobacterium tuberculosis
Ferwerda, G., Girardin, S. E., Kullberg, B. J., Bourhis, L. L., de Jong, D. J., Langenberg, D. M. L., van Crevel, R., Adema, G. J., Ottenhoff, T. H. M., van der Meer, J. W. M., et al. (2005) · PLoS Pathogens · doi:10.1371/journal.ppat.0010034 · Cited by 364 · see citing works
Regulatory regions and critical residues of NOD2 involved in muramyl dipeptide recognition
Tanabe, T., Chamaillard, M., Ogura, Y., Li, Z., Qiu, S., Masumoto, J., Ghosh, P., Moran, A. P., Predergast, M. M., Tromp, G. C., et al. (2004) · The EMBO Journal · doi:10.1038/sj.emboj.7600175 · Cited by 362 · see citing works
Benjamin, J. L., Hedin, C. R. H., Koutsoumpas, A., Ng, S. C., McCarthy, N. E., Hart, A. L., Kamm, M. A., Sanderson, J. D., Knight, S. C., Forbes, A., et al. (2011) · Gut · doi:10.1136/gut.2010.232025 · Cited by 361 · see citing works
Selby, W. S., Pavli, P., Crotty, B. J., Florin, T., Radford‐Smith, G. L., Gibson, P. G., Mitchell, B., Connell, W., Read, R. B., Merrett, M. N., et al. (2007) · Gastroenterology · doi:10.1053/j.gastro.2007.03.031 · Cited by 360 · see citing works
The human gut microbiome: current knowledge, challenges, and future directions
Dave, M., Higgins, P., Middha, S., & Rioux, K. P. (2012) · Translational research · doi:10.1016/j.trsl.2012.05.003 · Cited by 338 · see citing works
Inflammatory Bowel Disease as a Model for Translating the Microbiome
Huttenhower, C., Kostic, A. D., & Xavier, R. J. (2014) · Immunity · doi:10.1016/j.immuni.2014.05.013 · Cited by 332 · see citing works
Angelberger, S., Reinisch, W., Makristathis, A., Lichtenberger, C., Dejaco, C., Papay, P., Novacek, G., Trauner, M., Loy, A., & Berry, D. (2013) · American Journal of Gastroenterology · doi:10.1038/ajg.2013.257 · Cited by 330 · cited 2× · see citing works
“Interestingly, the only patient who experienced clinical improvement in the study of Angelberger and colleagues showed a microbiota composition that was, overall, very similar to the microbiota of the donor for the longest period of time (Angelberger et al. 2013).”
Bacteria-triggered CD4+ T Regulatory Cells Suppress Helicobacter hepaticus–induced Colitis
Kullberg, M. C., Jankovic, D. L., Gorelick, P. L., Caspar, P., Letterio, J. J., Cheever, A. W., & Sher, A. (2002) · The Journal of Experimental Medicine · doi:10.1084/jem.20020556 · Cited by 322 · see citing works
Picco, M. F. (2010) · Yearbook of Gastroenterology · doi:10.1016/s0739-5930(09)79399-7 · Cited by 316 · see citing works
Taylor, K. D., Norris, J. M., & Rotter, J. I. (2007) · Diabetes · doi:10.2337/db07-1324 · Cited by 307 · see citing works
Dupont, A. W., Richards, Jelinek, K. A., Krill, J. T., Rahimi, E. F., & Ghouri, Y. A. (2014) · Clinical and Experimental Gastroenterology · doi:10.2147/ceg.s27530 · Cited by 303 · see citing works
Cui, B., Feng, Q., Wang, H., Wang, M., Peng, Z., Li, P., Huang, G., Liu, Z., Wu, P., Fan, Z., et al. (2015) · Journal of Gastroenterology and Hepatology · doi:10.1111/jgh.12727 · Cited by 298 · see citing works
Rhee, K., Wu, S., Wu, X., Huso, D. L., Karim, B. O., Franco, A. A., Rabizadeh, S., Golub, J. E., Mathews, L. E., Shin, J. W., et al. (2009) · Infection and Immunity · doi:10.1128/iai.00814-08 · Cited by 297 · see citing works
A Pathobiont of the Microbiota Balances Host Colonization and Intestinal Inflammation
Chow, J., & Mazmanian, S. K. (2010) · Cell Host & Microbe · doi:10.1016/j.chom.2010.03.004 · Cited by 292 · see citing works
The Cytokine IL-22 Promotes Pathogen Colonization by Suppressing Related Commensal Bacteria
Behnsen, J., Jellbauer, S., Wong, C. P., Edwards, R. A., George, M. D., Ouyang, W., & Raffatellu, M. (2014) · Immunity · doi:10.1016/j.immuni.2014.01.003 · Cited by 279 · see citing works
Adherent and InvasiveEscherichia coliIs Associated with Granulomatous Colitis in Boxer Dogs
Simpson, K. W., Dogan, B., Rishniw, M., Goldstein, R. E., Klaessig, S., McDonough, P. L., German, A. J., Yates, R. M., Russell, D. G., Johnson, S. E., et al. (2006) · Infection and Immunity · doi:10.1128/iai.00067-06 · Cited by 278 · see citing works
Bacterial and fungal microbiota in relation to probiotic therapy (VSL#3) in pouchitis
Kühbacher, T., Ott, S. J., Helwig, U., Mimura, T., Rizzello, F., Kleessen, B., Gionchetti, P., Blaut, M., Campieri, M., Fölsch, U. R., et al. (2006) · Gut · doi:10.1136/gut.2005.078303 · Cited by 257 · see citing works
Fecal microbiota transplantation as novel therapy in gastroenterology: A systematic review
Rossen, N. (2015) · World Journal of Gastroenterology · doi:10.3748/wjg.v21.i17.5359 · Cited by 243 · see citing works
Jonkers, D., Penders, J., Masclee, A., & Pierik, M. (2012) · Drugs · doi:10.2165/11632710-000000000-00000 · Cited by 240 · see citing works
Bień, J., Palagani, V., & Bozko, P. M. (2012) · Therapeutic Advances in Gastroenterology · doi:10.1177/1756283x12454590 · Cited by 238 · see citing works
Li, E., Hamm, C. M., Gulati, A., Sartor, R. B., Chen, H., Wu, X., Zhang, T., Rohlf, F. J., Zhu, W., Gu, C. C., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0026284 · Cited by 236 · see citing works
Dieleman, L. A., Goerres, M. S., Arends, A., Sprengers, D., Torrice, C., Hoentjen, F., Grenther, W. B., & Sartor, R. B. (2003) · Gut · doi:10.1136/gut.52.3.370 · Cited by 231 · see citing works
Epithelial barrier: an interface for the cross‐communication between gut flora and immune system
Goto, Y., & Kiyono, H. (2012) · Immunological Reviews · doi:10.1111/j.1600-065x.2011.01078.x · Cited by 230 · see citing works
Bibiloni, R., Mangold, M., Madsen, K. L., Fedorak, R. N., & Tannock, G. W. (2006) · Journal of Medical Microbiology · doi:10.1099/jmm.0.46498-0 · Cited by 226 · see citing works
A new vision of immunity: homeostasis of the superorganism
Eberl, G. (2010) · Mucosal Immunology · doi:10.1038/mi.2010.20 · Cited by 222 · see citing works
The microbial basis of inflammatory bowel diseases
Dalal, S. R., & Chang, E. B. (2014) · Journal of Clinical Investigation · doi:10.1172/jci72330 · Cited by 195 · see citing works
Lara‐Villoslada, F., Debras, E., Nieto, A., Concha, Á., Gálvez, J., López‐Huertas, E., Bozá, J., Obled, C., & Xaus, J. (2006) · Clinical Nutrition · doi:10.1016/j.clnu.2005.11.004 · Cited by 188 · see citing works
Saccharomyces boulardii Does Not Prevent Relapse of Crohn's Disease
Bourreille, A., Cadiot, G., Dréau, G. L., Laharie, D., Beaugerie, L., Dupas, J., Marteau, P. R., Rampal, P., Moyse, D., Saleh, A., et al. (2013) · Clinical Gastroenterology and Hepatology · doi:10.1016/j.cgh.2013.02.021 · Cited by 186 · see citing works
Ward, J. M., Anver, M. R., Haines, D. C., Melhorn, J. M., Gorelick, P. L., Yan, L., & Fox, J. G. (1996) · PubMed · Cited by 186 · see citing works
Martínez, I., Muller, C. E., & Walter, J. (2013) · PLoS ONE · doi:10.1371/journal.pone.0069621 · Cited by 181 · see citing works
Wirtz, S. J., Finotto, S., Kanzler, S., Lohse, A. W., Blessing, M., Lehr, H. A., Galle, P. R., & Neurath, M. F. (1999) · PubMed · Cited by 179 · see citing works
Self-citationGrowth and host interaction of mouse segmented filamentous bacteria in vitro
Schnupf, P., Gaboriau‐Routhiau, V., Gros, M., Friedman, R. C., Moya‐Nilges, M., Nigro, G., Cerf–Bensussan, N., & Sansonetti, P. J. (2015) · Nature · doi:10.1038/nature14027 · Cited by 175 · see citing works
Rahimi, R., Nikfar, S., Rahimi, F. C., Elahi, B., Derakhshani, S., Vafaie, M., & Abdollahi, M. R. (2008) · Digestive Diseases and Sciences · doi:10.1007/s10620-007-0171-0 · Cited by 173 · see citing works
Plein, K., & Hotz, J. (1993) · PubMed · Cited by 167 · see citing works
Novel probiotics and prebiotics: road to the market
Kumar, H., Salminen, S., Verhagen, H., Rowland, I. R., Heimbach, J., Bañares, S., Young, T., Nomoto, K., & Lalonde, M. (2014) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2014.11.021 · Cited by 165 · see citing works
Multicenter analysis of fecal microbiota profiles in Japanese patients with Crohn’s disease
Andoh, A., Kuzuoka, H., Tsujikawa, T., Nakamura, S., Hirai, F., Suzuki, Y., Matsui, T., Fujiyama, Y., & Matsumoto, T. (2012) · Journal of Gastroenterology · doi:10.1007/s00535-012-0605-0 · Cited by 163 · see citing works
The gut microbiota in mouse models of inflammatory bowel disease
Gkouskou, K. K., Deligianni, C., Tsatsanis, C., & Eliopoulos, A. G. (2014) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2014.00028 · Cited by 163 · see citing works
Veltkamp, C., Tonkonogy, S. L., de Jong, Y. P., Albright, C. A., Grenther, W. B., Balish, E., Terhorst, C., & Sartor, R. B. (2001) · Gastroenterology · doi:10.1053/gast.2001.22547 · Cited by 148 · see citing works
Wirtz, S. J., Finotto, S., Kanzler, S., Lohse, A. W., Blessing, M., Lehr, H. A., Galle, P. R., & Neurath, M. F. (1999) · The Journal of Immunology · doi:10.4049/jimmunol.162.4.1884 · Cited by 148 · see citing works
Self-citationMycobacterium paratuberculosisis recognized by Toll-like receptors and NOD2
Ferwerda, G., Kullberg, B. J., de Jong, D. J., Girardin, S. E., Langenberg, D. M. L., van Crevel, R., Ottenhoff, T. H. M., van der Meer, J. W. M., & Netea, M. G. (2007) · Journal of Leukocyte Biology · doi:10.1189/jlb.0307147 · Cited by 131 · see citing works
Helicobacter hepaticusDoes Not Induce or Potentiate Colitis in Interleukin-10-Deficient Mice
Dieleman, L. A., Arends, A., Tonkonogy, S. L., Goerres, M. S., Craft, D. W., Grenther, W. B., Sellon, R. K., Balish, E., & Sartor, R. B. (2000) · Infection and Immunity · doi:10.1128/iai.68.9.5107-5113.2000 · Cited by 121 · see citing works
The role of infection in the aetiology of inflammatory bowel disease
Hansen, R., Thomson, J., El-Omar, E. M., & Hold, G. L. (2010) · Journal of Gastroenterology · doi:10.1007/s00535-009-0191-y · Cited by 120 · see citing works
Preventative Effects of Lactulose in the Trinitrobenzenesulphonic Acid Model of Rat Colitis
Camuesco, D., Perán, L., Comalada, M., Nieto, A., Stasi, L. C. D., Rodríguez‐Cabezas, M. E., Concha, Á., Zarzuelo, A., & Gálvez, J. (2005) · Inflammatory Bowel Diseases · doi:10.1097/01.mib.0000160808.30988.d9 · Cited by 109 · see citing works
Navaneethan, U. (2010) · World Journal of Gastroenterology · doi:10.3748/wjg.v16.i39.4892 · Cited by 97 · see citing works
Mycobacterium avium subspecies paratuberculosis in children with early-onset Crohnʼs disease
Kirkwood, C. D., Wagner, J., Boniface, K., Vaughan, J. A., Michalski, W. P., Catto‐Smith, A. G., Cameron, D. J. S., & Bishop, R. F. (2009) · Inflammatory Bowel Diseases · doi:10.1002/ibd.20967 · Cited by 96 · see citing works
The Role of Bacteria in the Pathogenesis of Inflammatory Bowel Disease
Friswell, M. K., Campbell, B. J., & Rhodes, J. M. (2010) · Gut and Liver · doi:10.5009/gnl.2010.4.3.295 · Cited by 91 · see citing works
Dysbiosis as a prerequisite for IBD.
Tamboli, C., Neut, C., Desreumaux, P., & Colombel, J. F. (2004) · Europe PMC (PubMed Central) · Cited by 85 · see citing works
Effector and memory T cell responses to commensal bacteria
Belkaid, Y., Bouladoux, N. J., & Hand, T. W. (2013) · Trends in Immunology · doi:10.1016/j.it.2013.03.003 · Cited by 80 · see citing works
The genetics of Crohn’s disease and ulcerative colitis –status quoand beyond
Ellinghaus, D., Bethune, J., Petersen, B., & Franke, A. (2014) · Scandinavian Journal of Gastroenterology · doi:10.3109/00365521.2014.990507 · Cited by 79 · see citing works
Gastrointestinal infection as a trigger for inflammatory bowel disease
Mann, E. A., & Saeed, S. A. (2011) · Current Opinion in Gastroenterology · doi:10.1097/mog.0b013e32834c453e · Cited by 79 · see citing works
Salmonella Modulation of Host Cell Gene Expression Promotes Its Intracellular Growth
Hannemann, S., Gao, B., & Galán, J. E. (2013) · PLoS Pathogens · doi:10.1371/journal.ppat.1003668 · Cited by 77 · see citing works
Towards a molecular risk map—Recent advances on the etiology of inflammatory bowel disease
Rosenstiel, P. C., Sina, C., Franke, A., & Schreiber, S. (2009) · Seminars in Immunology · doi:10.1016/j.smim.2009.10.001 · Cited by 76 · see citing works
Juste, R. A., Elguezábal, N., Garrido, J. M., Pavón, A., Geijó, M., Sevilla, I. A., Cabriada, J. L., Tejada, A., García-Campos, F., Casado, R., et al. (2008) · PLoS ONE · doi:10.1371/journal.pone.0002537 · Cited by 70 · see citing works
Sheil, B., MacSharry, J. A., O'Callaghan, L., O'Riordan, A., Waters, A., Morgan, J. G., Collins, J. K., O’Mahony, L., & Shanahan, F. (2006) · Clinical & Experimental Immunology · doi:10.1111/j.1365-2249.2006.03051.x · Cited by 70 · see citing works
Pierce, E. S. (2010) · Gut Pathogens · doi:10.1186/1757-4749-2-21 · Cited by 66 · see citing works
Analysis of the c- kit gene in patients with slow transit constipation
Tong, W.-D., Liu, B.-H., Zhang, L.-Y., & Zhang, S.-B. (2006) · Gut · doi:10.1136/gut.2006.094953 · Cited by 65 · see citing works
Berg, D., Clemente, J. C., & Colombel, J. (2015) · Expert Review of Gastroenterology & Hepatology · doi:10.1586/17474124.2015.1013031 · Cited by 64 · see citing works
Kim, H., Rhee, S. H., Pothoulakis, C., & LaMont, J. T. (2007) · Gastroenterology · doi:10.1053/j.gastro.2007.06.063 · Cited by 63 · see citing works
Human Defensins in Crohn’s Disease
Wehkamp, J., Fellermann, K., & Stange, E. F. (2005) · KARGER eBooks · doi:10.1159/000086672 · Cited by 60 · see citing works
Intestinal microbiota: The explosive mixture at the origin of inflammatory bowel disease?
Bringiotti, R. (2014) · World Journal of Gastrointestinal Pathophysiology · doi:10.4291/wjgp.v5.i4.550 · Cited by 60 · see citing works
Olsen, I., Tollefsen, S., Aagaard, C., Reitan, L. J., Bannantine, J. P., Andersen, P. L., Sollid, L. M., & Lundin, K. E. A. (2009) · PLoS ONE · doi:10.1371/journal.pone.0005641 · Cited by 59 · see citing works
Abdelouhab, K., Rafa, H., Toumi, R., Bouaziz, S., Medjeber, O., & Touil–Boukoffa, C. (2012) · Immunopharmacology and Immunotoxicology · doi:10.3109/08923973.2011.641971 · Cited by 43 · see citing works
Intestinal MicrobiOMICS to Define Health and Disease in Human and Mice
Sérino, M., Chabo, C., & Burcelin, R. (2012) · Current Pharmaceutical Biotechnology · doi:10.2174/138920112799857567 · Cited by 39 · see citing works
Elguezábal, N., Chamorro, S., Molina, E., Garrido, J. M., Izeta, A., Rodrigo, L., & Juste, R. A. (2012) · Gut Pathogens · doi:10.1186/1757-4749-4-6 · Cited by 35 · see citing works
Antibiotics and Inflammatory Bowel Diseases
Scribano, M. L., & Prantera, C. (2013) · Digestive Diseases · doi:10.1159/000354704 · Cited by 27 · see citing works
Microbial Learning Lessons: SFB Educate the Immune System
Lee, Y. K., & Mazmanian, S. K. (2014) · Immunity · doi:10.1016/j.immuni.2014.04.002 · Cited by 24 · see citing works
Commensal-Innate Immune Miscommunication in IBD Pathogenesis
Cario, E. (2012) · Digestive Diseases · doi:10.1159/000338120 · Cited by 16 · see citing works
VSL#3 for Ulcerative Colitis: Growing Evidence?
Scott, F. I., & Aberra, F. N. (2011) · Gastroenterology · doi:10.1053/j.gastro.2011.03.032 · Cited by 4 · see citing works
Intestinal microbiota: The explosive mixture at the origin of inflammatory bowel disease?
Cruz, R. C., Bringiotti, Enzo, Ierardi, Rosa, R., Lovero, Giuseppe, Losurdo, Alfredo, Di, et al. (2014) · 世界胃肠病理生理学杂志:英文版(电子版) · Cited by 1 · see citing works
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Vagus Nerve as Modulator of the Brain–Gut Axis in Psychiatric and Inflammatory Disorders
Breit, S., Kupferberg, A., Rogler, G., & Hasler, G. (2018) · Frontiers in Psychiatry · doi:10.3389/fpsyt.2018.00044 · Cited by 1,189 · see citing works
“immune Homeostasis The gastrointestinal tract is constantly confronted with food antigens, possible pathogens, and symbiotic intestinal microbiota that present a risk factor for intestinal inflammation (63).”
BackgroundSartor, R. B., & Wu, G. D. (2017) · Gastroenterology · doi:10.1053/j.gastro.2016.10.012 · Cited by 808 · see citing works
Dolinger, M. T., Torres, J., & Vermeire, S. (2024) · The Lancet · doi:10.1016/s0140-6736(23)02586-2 · Cited by 617 · see citing works
Nishino, K., Nishida, A., Inoüe, R., Kawada, Y., Ohno, M., Sakai, S., Inatomi, O., Bamba, S., Sugimoto, M., Kawahara, M., et al. (2017) · Journal of Gastroenterology · doi:10.1007/s00535-017-1384-4 · Cited by 463 · see citing works
“adherent/invasive Escherichia coli) [3, 4], the majority of bacterial species that characterize the dysbiosis of IBD have not been fully identified.”
BackgroundResultInfluentialAnanthakrishnan, A. N., Luo, C., Yajnik, V., Khalili, H., Garber, J. J., Stevens, B. W., Cleland, T., & Xavier, R. J. (2017) · Cell Host & Microbe · doi:10.1016/j.chom.2017.04.010 · Cited by 451 · see citing works
“The gut microbiome is a key determinant of initiation and propagation of luminal inflammation in IBD(Becker et al., 2015; Forbes et al., 2016; Gevers et al., 2014; Knights et al., 2013; Kostic et al., 2014).”
BackgroundInfluentialThe Gut Microbiota in Immune-Mediated Inflammatory Diseases
Forbes, J. D., Domselaar, G. V., & Bernstein, C. N. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.01081 · Cited by 430 · see citing works
Interactions between Intestinal Microbiota and Host Immune Response in Inflammatory Bowel Disease
Zhang, M., Sun, K., Wu, Y., Yang, Y., Tso, P., & Wu, Z. (2017) · Frontiers in Immunology · doi:10.3389/fimmu.2017.00942 · Cited by 347 · see citing works
“However, it should be kept in mind that the diversity and composition of bacteria among experimental animal studies or IBD patients are not consistent, and the results are contradictory under some conditions (72).”
BackgroundResultInfluentialDietary simple sugars alter microbial ecology in the gut and promote colitis in mice
Khan, S., Waliullah, S., Godfrey, V., Khan, M. A. W., Ramachandran, R. A., Cantarel, B. L., Behrendt, C. L., Peng, L., Hooper, L. V., & Zaki, H. (2020) · Science Translational Medicine · doi:10.1126/scitranslmed.aay6218 · Cited by 322 · see citing works
“exerts protective functions and maintains gut homeostasis through multiple mechanisms including induction of anti-inflammatory cytokines and protection against colonization of pathobionts to intestinal epithelium (55).”
BackgroundTryptophan Metabolism by Gut Microbiome and Gut-Brain-Axis: An in silico Analysis
Kaur, H., Bose, C., & Mande, S. S. (2019) · Frontiers in Neuroscience · doi:10.3389/fnins.2019.01365 · Cited by 320 · see citing works
The Role of Gut Microbiota in Intestinal Inflammation with Respect to Diet and Extrinsic Stressors
Lobionda, S., Sittipo, P., Kwon, H. Y., & Lee, Y. K. (2019) · Microorganisms · doi:10.3390/microorganisms7080271 · Cited by 319 · see citing works
“Proteobacteria species, belonging to the Enterobacteriaceae phylum, are commonly observed to be abundant in specific diseases, including inflammatory bowel disease (IBD) [15,19].”
BackgroundInfluentialIngestible electronics for diagnostics and therapy
Steiger, C., Abramson, A., Nadeau, P., Chandrakasan, A. P., Langer, R., & Traverso, G. (2018) · Nature Reviews Materials · doi:10.1038/s41578-018-0070-3 · Cited by 278 · see citing works
Risk of colorectal cancer in inflammatory bowel diseases
Nadeem, M. S., Kumar, V., Al-Abbasi, F. A., Kamal, M. A., & Anwar, F. (2019) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2019.05.001 · Cited by 250 · see citing works
Fábrega, M.-J., Rodríguez-Nogales, A., Garrido-Mesa, J., Algieri, F., Badía, J., Giménez, R., Gálvez, J., & Baldomà, L. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.01274 · Cited by 240 · see citing works
“Different letters indicate significant differences between groups (P < 0.05). genetically susceptible individuals, leading to the inflammatory status that characterizes these intestinal conditions (Becker et al., 2015).”
BackgroundInfluentialRintala, A., Pietilä, S., Munukka, E., Eerola, E., Pursiheimo, J.-P., Laiho, A., Pekkala, S., & Huovinen, P. (2017) · Journal of Biomolecular Techniques : JBT · doi:10.7171/jbt.17-2801-003 · Cited by 194 · see citing works
Intestinal microbiota mediates Enterotoxigenic Escherichia coli-induced diarrhea in piglets
Bin, P., Tang, Z., Liu, S., Chen, S., Xia, Y., Liu, J., Wu, H., & Zhu, G. (2018) · BMC Veterinary Research · doi:10.1186/s12917-018-1704-9 · Cited by 158 · see citing works
Prebiotics and the Human Gut Microbiota: From Breakdown Mechanisms to the Impact on Metabolic Health
Bedu-Ferrari, C., Biscarrat, P., Langella, P., & Cherbuy, C. (2022) · Nutrients · doi:10.3390/nu14102096 · Cited by 153 · see citing works
“Thus, diabetes [11], cardiovascular disease [12,13], obesity [14], inflammatory bowel disease [15,16], and non-alcoholic fatty liver disease (NAFLD) are examples of diseases associated with a shift in microbial patterns compared to healthy individuals [17].”
BackgroundIntestinal Bacteria Composition and Translocation of Bacteria in Inflammatory Bowel Disease
Vrakas, S., Mountzouris, K. C., Michalopoulos, G., Karamanolis, G. P., Papatheodoridis, G., Tzathas, C., & Gazouli, M. (2017) · PLoS ONE · doi:10.1371/journal.pone.0170034 · Cited by 130 · see citing works
Hirano, A., Umeno, J., Okamoto, Y., Shibata, H., Ogura, Y., Moriyama, T., Torisu, T., Fujioka, S., Fuyuno, Y., Kawarabayasi, Y., et al. (2018) · Journal of Gastroenterology and Hepatology · doi:10.1111/jgh.14129 · Cited by 129 · see citing works
Xie, J., Liu, Y., Chen, B., Zhang, G., Ou, S., Luo, J., & Peng, X. (2019) · Food & Nutrition Research · doi:10.29219/fnr.v63.1559 · Cited by 128 · see citing works
“of IBD, as indicated by experimental mouse model studies that demonstrated that the development of IBD was due to excessive translocation of bacteria into the bowel wall or the dysregulation of bacteria in genetically susceptible hosts (4).”
MethodAlemany-Cosme, E., González, E. S., Moret, I., Mateos, B., Iborra, M., Nos, P., Sandoval, J., & Beltrán, B. (2021) · Antioxidants · doi:10.3390/antiox10010064 · Cited by 127 · see citing works
“Most of these genes play an important role in the mucosal barrier function, antimicrobial recognition and function, and immune regulation [61].”
BackgroundEftychi, C., Schwarzer, R., Vlantis, K., Wachsmuth, L., Basic, M., Wagle, P., Neurath, M. F., Becker, C., Bleich, A., & Pasparakis, M. (2019) · Immunity · doi:10.1016/j.immuni.2019.06.008 · Cited by 118 · see citing works
Self-citationAhlawat, S., Kumar, P., Mohan, H., Goyal, S., & Sharma, K. K. (2021) · Critical Reviews in Microbiology · doi:10.1080/1040841x.2021.1876631 · Cited by 111 · see citing works
Han, B., Lv, X., Liu, G., Li, S., Fan, J., Chen, L., Huang, Z., Lin, G., Xu, X., Huang, Z., et al. (2023) · Gut Microbes · doi:10.1080/19490976.2023.2232143 · Cited by 116 · see citing works
“, Firmicutes) decreased.(3,19,21) Recently, the baseline gut microbiota was used to predict the treatment response in a prospective study of IBD patients receiving anti-α4β7-integrin as an initial treatment, and the researchers discovered that remission-achieving CD patients at week 14 had higher baseline levels of Ro…”
Resolution of ulcerative colitis
Neurath, M. F., & Leppkes, M. (2019) · Seminars in Immunopathology · doi:10.1007/s00281-019-00751-6 · Cited by 103 · see citing works
Self-citationINTESTINAL MICROBIOTA IN DIGESTIVE DISEASES
Passos, M. D. C. F., & Moraes-Filho, J. P. P. (2017) · Arquivos de Gastroenterologia · doi:10.1590/s0004-2803.201700000-31 · Cited by 101 · see citing works
Alteration of the Gut Microbiome in Inflammatory Bowel Disease
Andoh, A., & Nishida, A. (2023) · Digestion · doi:10.1159/000525925 · Cited by 88 · see citing works
Gut microbiome: a new player in gastrointestinal disease
Gorkiewicz, G., & Moschen, A. R. (2017) · Archiv für Pathologische Anatomie und Physiologie und für Klinische Medicin · doi:10.1007/s00428-017-2277-x · Cited by 87 · see citing works
“tified not only significant compositional alterations of the microbiome with reduction of potentially-protective commensals such as Faecalibacterium prausnitzii [113] but also a less”
BackgroundBacterial associations in the healthy human gut microbiome across populations
Loftus, M. G., Hassouneh, S. A.-D., & Yooseph, S. (2021) · Scientific Reports · doi:10.1038/s41598-021-82449-0 · Cited by 77 · see citing works
de Bruyn, M., Vandooren, J., Ugarte-Berzal, E., Arijs, I., Vermeire, S., & Opdenakker, G. (2016) · Critical Reviews in Biochemistry and Molecular Biology · doi:10.1080/10409238.2016.1199535 · Cited by 77 · see citing works
“In IBD, an imbalance in the composition of the gut microbiota, termed dysbiosis, has been determined to play an important role in the disease pathogenesis (Becker et al, 2015; Kamada et al, 2013; Round & Mazmanian, 2009; Sartor, 2008).”
BackgroundDovrolis, N., Michalopoulos, G., Theodoropoulos, G. E., Arvanitidis, K. I., Kolios, G. C., Sechi, L. A., Eliopoulos, A. G., & Gazouli, M. (2020) · Microorganisms · doi:10.3390/microorganisms8030438 · Cited by 73 · see citing works
“Unfortunately, this approach also prohibits us from detecting low-burden infections from bacteria that, for example, reside in mesenteric lymph nodes like the Mycobacterium avium paratuberculosis, which has been implicated in previous IBD studies [41,42], even though we detected an increase in other Actinobacteria lik…”
BackgroundVitamin A supplementation ameliorates ulcerative colitis in gut microbiota–dependent manner
Pang, B., Han, J., Liao, N., Li, J., Jiang, C., & Shi, J. (2021) · Food Research International · doi:10.1016/j.foodres.2021.110568 · Cited by 76 · see citing works
Modulating Composition and Metabolic Activity of the Gut Microbiota in IBD Patients
Matijašić, M., Meštrović, T., Perić, M., Paljetak, H. Č., Panek, M., Bender, D. V., Kelečić, D. L., Krznarić, Ž., & Verbanac, D. (2016) · International Journal of Molecular Sciences · doi:10.3390/ijms17040578 · Cited by 71 · see citing works
“Animal models of IBD suggest that not all bacterial species are created equal when it comes to inducing inflammation of the gastrointestinal tract [130,131]; hence it is not reasonable to expect that all antibiotic regimens will be similarly effective in all groups of patients.”
BackgroundIs there a relationship between intestinal microbiota, dietary compounds, and obesity?
Kałużna‐Czaplińska, J., Gątarek, P., Chartrand, M. S., Dadar, M., & Bjørklund, G. (2017) · Trends in Food Science & Technology · doi:10.1016/j.tifs.2017.10.010 · Cited by 72 · see citing works
Metagenomic analysis of bile salt biotransformation in the human gut microbiome
Das, P., Marcišauskas, S., Ji, B., & Nielsen, J. (2019) · BMC Genomics · doi:10.1186/s12864-019-5899-3 · Cited by 71 · see citing works
TH17 Cell and Epithelial Cell Crosstalk during Inflammatory Bowel Disease and Carcinogenesis
Kempski, J., Brockmann, L., Gagliani, N., & Huber, S. (2017) · Frontiers in Immunology · doi:10.3389/fimmu.2017.01373 · Cited by 66 · see citing works
“Additionally, several bacterial pathogens have been implicated in the onset or progression of the disease (10).”
BackgroundPang, B., Han, J., Liao, N., Li, J., Jiang, C., Shao, D., & Shi, J. (2021) · Food & Function · doi:10.1039/d0fo03479g · Cited by 66 · see citing works
Blaylock, R. L. (2017) · Surgical Neurology International · doi:10.4103/sni.sni_441_16 · Cited by 66 · see citing works
“coli translocation and in probiotic diversity and concentrations.[13,54,94] E.”
BackgroundLai, S., Molfino, A., Testorio, M., Perrotta, A. M., Currado, A., Pintus, G., Pietrucci, D., Unida, V., Rocca, D. L., Biocca, S., et al. (2019) · Nutrients · doi:10.3390/nu11123006 · Cited by 63 · see citing works
“Disturbance of normal gut microbiota (dysbiosis) has been implicated in the pathogenesis of diverse clinical conditions, such as obesity [1], type 2 diabetes [2], inflammatory bowel disease [3], and cardiovascular [4] and neurological diseases [5].”
BackgroundTranscriptional Signatures That Define Ulcerative Colitis in Remission
Fenton, C. G., Taman, H., Florholmen, J., Sørbye, S. W., & Paulssen, R. H. (2020) · Inflammatory Bowel Diseases · doi:10.1093/ibd/izaa075 · Cited by 63 · see citing works
Sanz, Y. (2015) · Annals of Nutrition and Metabolism · doi:10.1159/000440991 · Cited by 62 · see citing works
Age-related changes in the gut microbiota and the core gut microbiome of healthy Thai humans
La-ongkham, O., Nakphaichit, M., Nakayama, J., Keawsompong, S., & Nitisinprasert, S. (2020) · 3 Biotech · doi:10.1007/s13205-020-02265-7 · Cited by 61 · see citing works
“2009) and inflammatory bowel disease (Becker et al. 2015).”
Gao, R., Tian, S., Wang, J., & Zhu, W. (2021) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/s40104-021-00612-z · Cited by 60 · see citing works
“As research on the intestinal microbiota continues to deepen, researchers have found a close relationship between intestinal inflammatory diseases as well as intestinal health and intestinal microbiota in piglets [9].”
BackgroundGut-Brain Axis a Key Player to Control Gut Dysbiosis in Neurological Diseases
Pan, I., Issac, P. K., Rahman, M. M., Guru, A., & Arockiaraj, J. (2023) · Molecular Neurobiology · doi:10.1007/s12035-023-03691-3 · Cited by 60 · see citing works
“Antigens derived from food, potential pathogens, and symbiotic intestinal microorganisms are available throughout the GI tract and enhance the chances of intestinal inflammation [50].”
Microbial Butyrate Synthesis Indicates Therapeutic Efficacy of Azathioprine in IBD Patients
Effenberger, M., Reider, S., Waschina, S., Bronowski, C., Enrich, B., Adolph, T. E., Koch, R., Moschen, A. R., Rosenstiel, P. C., Aden, K., et al. (2020) · Journal of Crohn s and Colitis · doi:10.1093/ecco-jcc/jjaa152 · Cited by 59 · see citing works
Inflammatory bowel disease: Therapeutic limitations and prospective of the stem cell therapy
Mishra, R., Dhawan, P., Srivastava, A. S., & Singh, A. B. (2020) · World Journal of Stem Cells · doi:10.4252/wjsc.v12.i10.1050 · Cited by 58 · see citing works
Yu, J., Liu, T., Guo, Q., Wang, Z., Chen, Y., & Dong, Y. (2023) · Microbiology Spectrum · doi:10.1128/spectrum.04698-22 · Cited by 58 · see citing works
“Lactobacillus could induce the expression of anti-inflammatory cytokines and prevent the colonization of pathogens into the intestinal epithelium, thus maintaining intestinal homeostasis (47).”
BackgroundThe influence of vitamin D on M1 and M2 macrophages in patients with Crohn's disease
Dionne, S., Duchatellier, C.-F., & Seidman, E. G. (2017) · Innate Immunity · doi:10.1177/1753425917721965 · Cited by 57 · see citing works
Gut microbiota imbalance mediates intestinal barrier damage in high‐altitude exposed mice
Wang, Y., Shi, Y., Li, W., Wang, S., Zheng, J., Xu, G., Li, G., Shen, X., & Yang, J. (2022) · FEBS Journal · doi:10.1111/febs.16409 · Cited by 55 · see citing works
The gut dysbiosis-cancer axis: illuminating novel insights and implications for clinical practice
Asseri, A. H., Bakhsh, T., Abuzahrah, S. S., Ali, S., & Rather, I. A. (2023) · Frontiers in Pharmacology · doi:10.3389/fphar.2023.1208044 · Cited by 54 · see citing works
“Microbial dysbiosis is characterized by a shift from a diverse bacterial composition to a maladaptive and pathogenic one, and has been linked to numerous diseases, including diabetes, cardiovascular disease, obesity, inflammatory bowel disease, and various cancers (Koren et al., 2011; Karlsson et al., 2012; Karlsson e…”
BackgroundZhang, Y., Cai, L., Qi, J.-Y., Lin, Y., Dai, Y.-C., Jiao, N., Chen, Y., Zheng, L., Wang, B., Zhu, L., et al. (2019) · World Journal of Gastroenterology · doi:10.3748/wjg.v25.i25.3242 · Cited by 55 · see citing works
Bakır-Güngör, B., Hacılar, H., Jabeer, A., Nalbantoğlu, Ö. U., Aran, O., & Yousef, M. (2022) · PeerJ · doi:10.7717/peerj.13205 · Cited by 52 · see citing works
Kujiraoka, M., Kuroda, M., Asai, K., Sekizuka, T., Kato, K., Watanabe, M., Matsukiyo, H., Saito, T., Ishii, T., Katada, N., et al. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.00685 · Cited by 52 · see citing works
“coliwas generally detected in a smaller percentage in feces and saliva (Becker et al., 2015), this result suggested that it was a marked etiological agent of AC and that dysbiosis may be related to postoperative complications.”
BackgroundCombined Signature of the Fecal Microbiome and Plasma Metabolome in Patients with Ulcerative Colitis
Sun, M., Du, B., Shi, Y., Lu, Y., Zhou, Y. Y., & Liu, B.-R. (2019) · Medical Science Monitor · doi:10.12659/msm.916009 · Cited by 51 · see citing works
“Inflammatory bowel disease (IBD) involves chronic, idiopathic, and relapsing inflammation in the gastrointestinal (GI) tract, including Crohn’s disease (CD) and ulcerative colitis (UC) [1].”
BackgroundNatural products targeting Nrf2/ARE signaling pathway in the treatment of inflammatory bowel disease
Li, B., Wang, Y., Jiang, X., Du, H., Shi, Y., Xiu, M., Liu, Y., & He, J. (2023) · Biomedicine & Pharmacotherapy · doi:10.1016/j.biopha.2023.114950 · Cited by 50 · see citing works
Wall of Resilience: How the Intestinal Epithelium Prevents Inflammatory Onslaught in the Gut
Liebing, E., Krug, S. M., Neurath, M. F., Siegmund, B., & Becker, C. (2024) · Cellular and Molecular Gastroenterology and Hepatology · doi:10.1016/j.jcmgh.2024.101423 · Cited by 52 · see citing works
Self-citationComposition of the Intestinal Microbiota Determines the Outcome of Virus-Triggered Colitis in Mice
Bolsega, S., Basic, M., Smoczek, A., Büettner, M., Eberl, C., Ahrens, D., Odum, K. A., Stecher, B., & Bleich, A. (2019) · Frontiers in Immunology · doi:10.3389/fimmu.2019.01708 · Cited by 50 · see citing works
“The intestinal microbiota was shown to be crucial for the development of IBD, while genetic susceptibility and environmental factors can also play an important role (13, 14).”
BackgroundBamola, V. D., Dubey, D., Samanta, P., Kedia, S., Ahuja, V., Madempudi, R. S., Neelamraju, J., & Chaudhry, R. (2022) · Anaerobe · doi:10.1016/j.anaerobe.2022.102652 · Cited by 53 · see citing works
Khan, S., Imran, A., Malik, A., Chaudhary, A. A., Rub, A., Jan, A. T., Syed, J. B., & Rolfo, C. D. (2018) · Critical Reviews in Clinical Laboratory Sciences · doi:10.1080/10408363.2018.1517144 · Cited by 49 · see citing works
Lü, Z., Xiong, W., Xiao, S., Lin, Y., Yu, K., Yue, G., Liu, Q., Li, F., & Liang, J. (2020) · Chinese Medicine · doi:10.1186/s13020-020-00327-9 · Cited by 47 · see citing works
Crosstalk between microbiota, pathogens and the innate immune responses
Günther, C., Josenhans, C., & Wehkamp, J. (2016) · International Journal of Medical Microbiology · doi:10.1016/j.ijmm.2016.03.003 · Cited by 48 · see citing works
Hu, Y., Ye, Z., Wu, M., She, Y., Li, L., Xu, Y.-J., Qin, K., Hu, Z., Yang, M., Lu, F., et al. (2021) · Frontiers in Medicine · doi:10.3389/fmed.2021.766126 · Cited by 44 · see citing works
“So far, many experts believe that the dysbiosis of intestinal microbiota can lead to the dysregulation of the immune response to bacterial antigens, and ultimately leads to the occurrence of IBD (45, 46).”
BackgroundInfluentialHaange, S., Jehmlich, N., Hoffmann, M., Weber, K., Lehmann, J., von Bergen�, M., & Slanina, U. (2019) · Journal of Proteome Research · doi:10.1021/acs.jproteome.8b00974 · Cited by 43 · see citing works
Qi, M., Cao, Z., Shang, P., Zhang, H., Hussain, R., Mehmood, K., Chang, Z., Wu, Q., & Dong, H. (2021) · Microbial Pathogenesis · doi:10.1016/j.micpath.2021.105106 · Cited by 43 · see citing works
Models to evaluate the barrier properties of mucus during drug diffusion
Liu, L., Tian, C., Dong, B., Xia, M., Cai, Y., Hu, R., & Chu, X. (2021) · International Journal of Pharmaceutics · doi:10.1016/j.ijpharm.2021.120415 · Cited by 42 · see citing works
Mirjalali, H., Abbasi, M. R., Naderi, N., Hasani, Z., Mirsamadi, E. S., Stensvold, C. R., Balaii, H., Aghdaei, H. A., & Zali, M. R. (2017) · European Journal of Clinical Microbiology & Infectious Diseases · doi:10.1007/s10096-017-3065-x · Cited by 42 · see citing works
Dai, Z. F., Xu, Y., Yang, R., Wang, H., Xu, D., Yang, J., Guo, X., Meng, S., Xu, R., Li, Y., et al. (2021) · Experimental and Therapeutic Medicine · doi:10.3892/etm.2021.10757 · Cited by 41 · see citing works
“In response to various stresses, such as inflammation and antibi‐ otics, the microbial diversity decreases, the normal bacterial functions cannot be performed and anecological imbalance occurs, which indicates that the gut microbiota diversity is required to maintain balance (13,46,55,56).”
BackgroundSchmidt, J., Weigert, M., Leuschner, C., Hartmann, H., Raddatz, D., Haak, R., Mausberg, R. F., Kottmann, T., Schmalz, G., & Ziebolz, D. (2018) · Journal of Periodontology · doi:10.1002/jper.17-0486 · Cited by 40 · see citing works
“Tf IBD 24 (41) 5 (8) 3 (5) 11 (19) 16 (27) 59 % 0.”
InfluentialTili, E., & Michaille, J. (2016) · Molecules · doi:10.3390/molecules21091263 · Cited by 40 · see citing works
“Indeed, fecal microbiota transplantation has been developed as a new promising therapeutics for treatment of several gut inflammatory diseases [97].”
BackgroundThe Mammalian Microbiome and Its Importance in Laboratory Animal Research
Bleich, A., & Fox, J. G. (2015) · ILAR Journal · doi:10.1093/ilar/ilv031 · Cited by 38 · see citing works
“Effects of the intestinal microbiota on the host are reviewed by Becker and colleagues and Hörmannsperger and colleagues (Becker et al. 2015; Hörmannsperger et al. 2015).”
BackgroundNiu, W., Yang, F., Fu, Z., Dong, Y., Zhang, Z., & Ju, J. (2021) · Microbial Pathogenesis · doi:10.1016/j.micpath.2021.105381 · Cited by 39 · see citing works
Yacoub, R., Jacob, A., Wlaschin, J. J., McGregor, M. M., Quigg, R. J., & Alexander, J. J. (2017) · Immunobiology · doi:10.1016/j.imbio.2017.11.004 · Cited by 36 · see citing works
Treatment of murine colitis by Saccharomyces boulardii secreting atrial natriuretic peptide
Liu, C., Chang, J.-H., Chang, Y.-C., & Mou, K. Y. (2020) · Journal of Molecular Medicine · doi:10.1007/s00109-020-01987-8 · Cited by 35 · see citing works
“It is generally accepted that the abnormal alteration of gut microbiota plays an important role in IBD pathogenesis [18], and the ability of probiotics to positively regulate the gut flora can be beneficial to the disease [19, 20].”
BackgroundStolzer, I., Kaden-Volynets, V., Ruder, B., Letizia, M., Bittel, M., Rausch, P., Basic, M., Bleich, A., Baines, J. F., Neurath, M. F., et al. (2019) · Inflammatory Bowel Diseases · doi:10.1093/ibd/izz142 · Cited by 31 · see citing works
Self-citationWang, Y., Song, X., Wang, Z., Li, Z., & Geng, Y. (2023) · Polymers · doi:10.3390/polym15061414 · Cited by 32 · see citing works
“Gut flora plays a key role in the metabolism, development, and function of the host immune system [12].”
BackgroundPeng-fei, X., Lv, T., Dong, S., Cui, Z., Luo, X., Jia, B., Jeon, C. O., & Zhang, J. (2022) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2022.04.006 · Cited by 31 · see citing works
“However, there is no evidence that changes in intestinal microbes are the cause or result of IBD [56].”
BackgroundMucosa-Associated Microbiota in the Gastrointestinal Tract of Healthy Japanese Subjects
Kashiwagi, S., Naito, Y., Inoüe, R., Takagi, T., Nakano, T., Inada, Y., Fukui, A., Katada, K., Mizushima, K., Kamada, K., et al. (2019) · Digestion · doi:10.1159/000496102 · Cited by 31 · see citing works
Exposure to copper altered the intestinal microbiota in Chinese brown frog (Rana chensinensis)
Yang, Y., Song, X., Chen, A., Wang, H., & Chai, L. (2020) · Environmental Science and Pollution Research · doi:10.1007/s11356-020-07856-8 · Cited by 31 · see citing works
Aximujiang, K., Kaheman, K., Wushouer, X., Wu, G., Ahemaiti, A., & Yunusi, K. (2022) · Frontiers in Pharmacology · doi:10.3389/fphar.2022.859628 · Cited by 31 · see citing works
Loss of RHBDF2 results in an early-onset spontaneous murine colitis
Geesala, R., Schanz, W., Biggs, M., Dixit, G., Skurski, J., Gurung, P., Meyerholz, D. K., Elliott, D. E., Issuree, P. D. A., & Maretzky, T. (2019) · Journal of Leukocyte Biology · doi:10.1002/jlb.4a0718-283rr · Cited by 30 · see citing works
Prevalence of allergic diseases in children with inflammatory bowel disease
Wasielewska, Z., Dolińska, A., Wilczyńska, D., Szaflarska‐Popławska, A., & Krogulska, A. (2019) · Advances in Dermatology and Allergology · doi:10.5114/ada.2018.81189 · Cited by 29 · see citing works
Ren, R., Zhao, A., Chen, L., Wu, S., Hung, W., & Wang, B. (2022) · Journal of the Science of Food and Agriculture · doi:10.1002/jsfa.12414 · Cited by 29 · see citing works
Dong, J., Zheng, Y., Wu, T., He, Q., Teng, G.-G., & Wang, H. (2019) · Chinese Medical Journal · doi:10.1097/cm9.0000000000000364 · Cited by 29 · see citing works
Innate lymphoid cells in intestinal cancer development
Atreya, I., Kindermann, M., & Wirtz, S. J. (2019) · Seminars in Immunology · doi:10.1016/j.smim.2019.02.001 · Cited by 28 · see citing works
Self-citationGuo, M., Miao, M., Wang, Y., Duan, M., Yang, F., Chen, Y., Yuan, W., & Zheng, H. (2020) · Scientific Reports · doi:10.1038/s41598-020-76591-4 · Cited by 27 · see citing works
Microbiota, not host origin drives ex vivo intestinal epithelial responses
Arnauts, K., Sudhakar, P., Verstockt, S., Lapierre, C., Potche, S., Caenepeel, C., Verstockt, B., Raes, J., Vermeire, S., Sabino, J., et al. (2022) · Gut Microbes · doi:10.1080/19490976.2022.2089003 · Cited by 26 · see citing works
Farhadfar, N., Gharaibeh, R. Z., Dahl, W. J., Mead, L., Alabasi, K. M., Newsome, R. C., Irizarry-Gatell, V., Weaver, M. T., Al‐Mansour, Z., Jobin, C., et al. (2021) · Transplantation and Cellular Therapy · doi:10.1016/j.jtct.2021.02.017 · Cited by 25 · see citing works
Zhou, J., Yang, C., Lei, W., Yang, Z., Chen, J., Lin, H., Li, Q., & Yuan, W. (2022) · BMC Nephrology · doi:10.1186/s12882-022-02704-y · Cited by 25 · see citing works
Precision medicine and drug optimization in adult inflammatory bowel disease patients
Vieujean, S., & Louis, E. J. (2023) · Therapeutic Advances in Gastroenterology · doi:10.1177/17562848231173331 · Cited by 25 · see citing works
A phytopharmacological overview of medicinal plants used for prophylactic and treatment of colitis
Akkol, E. K., Karpuz, B., Sobarzo‐Sánchez, E., & Khan, H. Z. (2020) · Food and Chemical Toxicology · doi:10.1016/j.fct.2020.111628 · Cited by 23 · see citing works
Udayan, S., Buttó, L. F., Rossini, V., Velmurugan, J., Martínez‐López, M., Sancho, D., Melgar, S., O’Toole, P. W., & Nally, K. (2021) · Scientific Reports · doi:10.1038/s41598-021-85347-7 · Cited by 23 · see citing works
Bosch, S., Wintjens, D., Wicaksono, A. N., Kuijvenhoven, J. P., van der Hulst, R. W. M., Stokkers, P. C. F., Daulton, E., Pierik, M. J., Covington, J. A., de Meij, T. G. J., et al. (2020) · Digestive and Liver Disease · doi:10.1016/j.dld.2020.03.007 · Cited by 22 · see citing works
Role of melatonin in murine “restraint stress”-induced dysfunction of colonic microbiota
Lin, R., Wang, Z., Cao, J., Gao, T., Dong, Y., & Chen, Y. (2021) · The Journal of Microbiology · doi:10.1007/s12275-021-0305-7 · Cited by 22 · see citing works
Interleukin-37 exacerbates experimental colitis in an intestinal microbiome-dependent fashion
Cong, J., Wu, D., Dai, H., Ma, Y., Liao, C., Li, L., Ye, L., & Huang, Z. W. (2022) · Theranostics · doi:10.7150/thno.69616 · Cited by 22 · see citing works
“It can cause colon inflammation by allowing more bacteria to translocate to the laminal propria compartment and triggering inappropriate host immune responses when confronted with the commensal microbiota [3-6].”
BackgroundAn improved rat model for chronic inflammatory bowel disease
Ghattamaneni, N. K. R., Panchal, S. K., & Brown, L. (2018) · Pharmacological Reports · doi:10.1016/j.pharep.2018.10.006 · Cited by 22 · see citing works
“During dysbiosis in IBD, decreases in Firmicutes and Bacteroidetes are observed with increases in Proteobacteria and Actinobacteria [27].”
BackgroundInfluentialRegulation of Human Innate Lymphoid Cells in the Context of Mucosal Inflammation
Schulz-Kuhnt, A., Wirtz, S. J., Neurath, M. F., & Atreya, I. (2020) · Frontiers in Immunology · doi:10.3389/fimmu.2020.01062 · Cited by 21 · see citing works
Self-citationFeatures of the gut prokaryotic virome of Japanese patients with Crohn’s disease
Imai, T., Inoüe, R., Nishida, A., Yokota, Y., Morishima, S., Kawahara, M., Kusada, H., Tamaki, H., & Andoh, A. (2022) · Journal of Gastroenterology · doi:10.1007/s00535-022-01882-8 · Cited by 20 · see citing works
Chamorro, N., Montero, D. A., Gallardo, P., Farfán, M. J., Mauricio Contreras, G., la Fuente, M. D., Dubois‐Camacho, K., Hermoso, M. A., Quera, R., Pizarro‐Guajardo, M., et al. (2021) · Microbial Cell · doi:10.15698/mic2021.09.760 · Cited by 21 · see citing works
“Previous studies have also shown the same alteration in the abundance of these phyla in the mucosa-associated microbiota of IBD patients [35, 63, 64].”
ResultRajesh, K. M., Kinra, M., Ranadive, N., Pawaskar, G. M., Mudgal, J., & Raval, R. (2023) · Naunyn-Schmiedeberg s Archives of Pharmacology · doi:10.1007/s00210-023-02710-3 · Cited by 18 · see citing works
“Chronic inflammatory gastrointestinal tract disorders fall under the umbrella term of Inflammatory Bowel Disease (IBD), which encompasses conditions such as ulcerative colitis (UC) and Crohn disease (CD) (Becker et al. 2015b).”
BackgroundJatrorrhizine alleviates ulcerative colitis via regulating gut microbiota and NOS2 expression
Zhang, J. L., Zhang, M.-N., Wang, H., Yang, X. Z., & Yu, C. G. (2022) · Gut Pathogens · doi:10.1186/s13099-022-00514-z · Cited by 17 · see citing works
“Discussion Several studies have shown evidence that gut dysbiosis is closely related to UC [33, 34].”
BackgroundGao, R., Wang, C., Aricha, H., Tian, Y., Ren, S., Lv, W., Chen, A., & Zhang, J. (2021) · Animals · doi:10.3390/ani11113314 · Cited by 17 · see citing works
“Alterations in the composition of the gut microbiota can lead to a variety of diseases and dysfunctions, including inflammatory bowel disease [6], obesity [7], colorectal cancer [8], and type 2 diabetes [9].”
Background
- Authors
- Becker, C., Neurath, M. F., & Wirtz, S.
- Affiliations
- Friedrich-Alexander-Universität Erlangen-Nürnberg (DE)
- Corresponding author
- Becker, Christoph
- Venue
- ILAR Journal
- Publisher
- Oxford University Press (OUP)
- Published
- 2015-08-31
- Volume
- 56
- Issue
- 2
- Pages
- 192-204
- ISSN
- 1084-2020 (ISSN-L)
- 1930-6180
- OpenAlex
- W2235910927
- Cited by
- 185
- References
- 144
- Citations by year
- 2026: 8 · 2025: 5 · 2024: 14 · 2023: 15 · 2022: 31 · 2021: 25 · 2020: 20 · 2019: 24 · 2018: 11 · 2017: 18 · 2016: 9 · 2015: 3
- FWCI
- 1.32
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- ILAR Journal (publishedVersion)
- PubMed (publishedVersion)
- HighWire Press Open Archive (submittedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Inflammatory Bowel Disease
- Health Sciences › Dentistry › Periodontics › Oral microbiology and periodontitis research
- Keywords
- gut microbiota, inflammatory bowel disease, Crohn's disease, ulcerative colitis, intestinal barrier, mucosal immunity, bacterial translocation, host susceptibility, microbiota modulation, treatment options
- MeSH terms
- Gastrointestinal Microbiome, Animals, Colitis, Ulcerative, Crohn Disease, Humans, Inflammatory Bowel Diseases, Models, Animal
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