Export of microRNAs and microRNA-protective protein by mammalian cells
Open accessAbstract
The discovery of microRNAs (miRNAs) as a new class of regulators of gene expression has triggered an explosion of research activities, but has left many unanswered questions about how this regulation functions and how it is integrated with other regulatory mechanisms. A number of miRNAs have been found to be present in plasma and other body fluids of humans and mice in surprisingly high concentrations. This observation was unexpected in two respects: first, the fact that these molecules are present at all outside the cell at significant concentrations and second, that these molecules appear to be stable outside of the cell. In light of this it has been suggested that the biological function of miRNAs may also extend outside of the cell and mediate cell-cell communication. We report here that after serum deprivation several human cell lines tested promptly export a substantial amount of miRNAs into the culture medium and the export process is largely energy dependent. The exported miRNAs are found both within and outside of the 16.5 and 120 K centrifugation pellets which contain most of the known cell-derived vesicles, the microvesicles and exosomes. We have identified some candidate proteins involved in this system, and one of these proteins may also play a role in protecting extracellular miRNAs from degradation. Our results point to a hitherto unrecognized and uncharacterized miRNA trafficking system in mammalian cells that is consistent with the cell-cell communication hypothesis.
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Other proteins found to bind extracellular miRNAs include high-density lipoprotein and nucleophosmin 1.
“Other proteins found to bind extracellular miRNAs include high-density lipoprotein (HDL) (126, 127) and nucleophosmin 1 (NPM1) (110, 118, 128).”
From Overview of MicroRNA Biogenesis, Mechanisms of Actions, and Circulation (2018) · cites this paper as [110]
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Valadi, H., Ekström, K., Bossios, A., Sjöstrand, M., Lee, J. J., & Lötvall, J. O. (2007) · Nature Cell Biology · doi:10.1038/ncb1596 · Cited by 12,834 · see citing works
Causes and consequences of microRNA dysregulation in cancer
Croce, C. M. (2009) · Nature Reviews Genetics · doi:10.1038/nrg2634 · Cited by 3,003 · see citing works
An Abundant Class of Tiny RNAs with Probable Regulatory Roles in <i>Caenorhabditis elegans</i>
Lau, N. C., Lim, L. P., Weinstein, E. G., & Bartel, D. P. (2001) · Science · doi:10.1126/science.1065062 · Cited by 2,713 · see citing works
Bushati, N., & Cohen, S. M. (2007) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev.cellbio.23.090506.123406 · Cited by 2,563 · see citing works
Giard, D. J., Aaronson, S. A., Todaro, G. J., Arnstein, P., Kersey, J. H., Dosik, H., & Parks, W. P. (1973) · JNCI Journal of the National Cancer Institute · doi:10.1093/jnci/51.5.1417 · Cited by 2,293 · see citing works
Knowles, B. B., Howe, C. C., & Aden, D. P. (1980) · Science · doi:10.1126/science.6248960 · Cited by 2,026 · see citing works
Circulating microRNAs, potential biomarkers for drug-induced liver injury
Wang, K., Zhang, S., Marzolf, B., Troisch, P., Brightman, A., Hu, Z., Hood, L. E., & Galas, D. J. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0813371106 · Cited by 1,149 · see citing works
Self-citationExosomes: proteomic insights and diagnostic potential
Simpson, R. J., Lim, J. W., Moritz, R. L., & Mathivanan, S. (2009) · Expert Review of Proteomics · doi:10.1586/epr.09.17 · Cited by 1,113 · see citing works
Major nucleolar proteins shuttle between nucleus and cytoplasm
Borer, R. A., Lehner, C. F., Eppenberger, H. M., & Nigg, E. A. (1989) · Cell · doi:10.1016/0092-8674(89)90241-9 · Cited by 1,113 · see citing works
Lim, L. P., Glasner, M. E., Yekta, S., Burge, C. B., & Bartel, D. P. (2003) · Science · doi:10.1126/science.1080372 · Cited by 967 · see citing works
Misumi, Y., Misumi, Y., Miki, K., Takatsuki, A., Tamura, G., & Ikehara, Y. (1986) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)67398-3 · Cited by 847 · see citing works
Kiss (2002) · doi:10.1016/s0092-8674(02)00718-3 · Cited by 816 · see citing works
Exosomes from human saliva as a source of microRNA biomarkers
Michael, A., Bajracharya, S., Yuen, P. S. T., Zhou, H., Star, R., Illei, G. G., & Alevizos, I. (2009) · Oral Diseases · doi:10.1111/j.1601-0825.2009.01604.x · Cited by 725 · see citing works
Hanke, M., Hoefig, K. P., Merz, H., Feller, A. C., Kausch, I., Jocham, D., Warnecke, J. M., & Sczakiel, G. (2009) · Urologic Oncology Seminars and Original Investigations · doi:10.1016/j.urolonc.2009.01.027 · Cited by 638 · see citing works
Circulating microRNA-1 as a potential novel biomarker for acute myocardial infarction
Ai, J., Zhang, R., Li, Y., Pu, J., Lu, Y., Jiao, J., Li, K., Yu, B., Li, Z., Wang, R., et al. (2009) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2009.11.005 · Cited by 526 · see citing works
HSP60 trafficking in adult cardiac myocytes: role of the exosomal pathway
Gupta, S., & Knowlton, A. A. (2007) · American Journal of Physiology-Heart and Circulatory Physiology · doi:10.1152/ajpheart.01355.2006 · Cited by 390 · see citing works
Hanson, E., Lubenow, H., & Ballantyne, J. (2009) · Analytical Biochemistry · doi:10.1016/j.ab.2009.01.037 · Cited by 379 · see citing works
Kesimer, M., Scull, M., Brighton, B., DeMaria, G., Burns, K., O'Neal, W., Pickles, R. J., & Sheehan, J. K. (2009) · The FASEB Journal · doi:10.1096/fj.08-119131 · Cited by 346 · see citing works
Urinary exosomal transcription factors, a new class of biomarkers for renal disease
Zhou, H., Cheruvanky, A., Hu, X., Matsumoto, T., Hiramatsu, N., Cho, M. E., Berger, A. J., Leelahavanichkul, A., Doi, K., Chawla, L. S., et al. (2008) · Kidney International · doi:10.1038/ki.2008.206 · Cited by 276 · see citing works
Nucleophosmin Serves as a Rate-Limiting Nuclear Export Chaperone for the Mammalian Ribosome
Maggi, L. B., Kuchenruether, M., Dadey, D. Y. A., Schwope, R. M., Grisendi, S., Townsend, R. R., Pandolfi, P. P., & Weber, J. D. (2008) · Molecular and Cellular Biology · doi:10.1128/mcb.01548-07 · Cited by 212 · see citing works
Self-citationPeng, X., Li, Y., Walters, K., Rosenzweig, E., Lederer, S., Aicher, L. D., Proll, S. C., & Katze, M. G. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-373 · Cited by 186 · see citing works
MicroRNA-127 modulates fetal lung development
Bhaskaran, M., Wang, Y., Zhang, H., Weng, T., Baviskar, P. S., Guo, Y., Gou, D., & Liu, L. (2009) · Physiological Genomics · doi:10.1152/physiolgenomics.90268.2008 · Cited by 146 · see citing works
Christensen, M., & Schratt, G. M. (2009) · Neuroscience Letters · doi:10.1016/j.neulet.2009.04.043 · Cited by 107 · see citing works
MicroRNA Gene Networks in Oncogenesis
Drakaki, A., & Iliopoulos, D. (2009) · Current Genomics · doi:10.2174/138920209787581299 · Cited by 103 · see citing works
Biggiogera, M., Bürki, K., Kaufmann, S. H., et al. (1990) · Development · doi:10.1242/dev.110.4.1263 · Cited by 100 · see citing works
Hanson, E., Lubenow, H., & Ballantyne, J. (2009) · Forensic science international. Genetics supplement series · doi:10.1016/j.fsigss.2009.08.184 · Cited by 97 · see citing works
Epstein-Barr virus-mediated dysregulation of human microRNA expression
Godshalk, S. E., Bhaduri‐McIntosh, S., & Slack, F. J. (2008) · Cell Cycle · doi:10.4161/cc.7.22.7120 · Cited by 88 · see citing works
Serum deprivation-induced HepG2 cell death is potentiated by CYP2E1
Zhuge, J., & Cederbaum, A. I. (2005) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2005.08.012 · Cited by 70 · see citing works
Nucleophosmin may act as an alarmin: implications for severe sepsis
Nawa, Y., Kawahara, K., Tancharoen, S., Meng, X., Sameshima, H., Ito, T., Masuda, Y., Imaizumi, H., Hashiguchi, T., & Maruyama, I. (2009) · Journal of Leukocyte Biology · doi:10.1189/jlb.1008644 · Cited by 43 · see citing works
Increased MicroRNA Activity in Human Cancers
Israel, A., Sharan, R., Ruppin, E., & Galun, E. (2009) · PLoS ONE · doi:10.1371/journal.pone.0006045 · Cited by 43 · see citing works
Elucidation of apoptosis induced by serum deprivation in cultured conjunctival epithelial cells
Higuchi, A. (2006) · British Journal of Ophthalmology · doi:10.1136/bjo.2005.088203 · Cited by 39 · see citing works
Tyler, D. D., Gonze, J., Lamy, F., et al. (1968) · Biochemical Journal · doi:10.1042/bj1060123 · Cited by 35 · see citing works
Identification of microRNAs with regulatory potential using a matched microRNA-mRNA time-course data
Jayaswal, V., Lutherborrow, M. A., Ma, D. D. F., et al. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp153 · Cited by 35 · see citing works
MicroRNA and stem cell regulation.
Wang, Y., Russell, I., & Chen, C. (2009) · PubMed · Cited by 30 · see citing works
The Chicken or the Egg: MicroRNA-Mediated Regulation of mRNA Translation or mRNA Stability
Omer, A. D., Janas, M. M., & Novina, C. D. (2009) · Molecular Cell · doi:10.1016/j.molcel.2009.09.003 · Cited by 27 · see citing works
Yang, M.-H., Yoo, K. H., Yook, Y. J., Park, E.-Y., Jeon, J.-O., Choi, S.-H., Park, S., Woo, Y. M., Lee, M.-J., & Park, J. H. (2007) · BMB Reports · doi:10.5483/bmbrep.2007.40.2.277 · Cited by 9 · see citing works
Hijacking ZIP codes: posttanscriptional regulation of CCN2 by nucleophosmin
Leask, A. (2009) · Journal of Cell Communication and Signaling · doi:10.1007/s12079-009-0039-5 · Cited by 1 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Biogenesis, Secretion, and Intercellular Interactions of Exosomes and Other Extracellular Vesicles
Colombo, M., Raposo, G., & Théry, C. (2014) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-101512-122326 · Cited by 6,186 · see citing works
Overview of MicroRNA Biogenesis, Mechanisms of Actions, and Circulation
O'Brien, J., Hayder, H., Zayed, Y., & Peng, C. (2018) · Frontiers in Endocrinology · doi:10.3389/fendo.2018.00402 · Cited by 5,287 · see citing works
Arroyo, J. D., Chevillet, J. R., Kroh, E. M., Ruf, I. K., Pritchard, C. C., Gibson, D. F., Mitchell, P. S., Bennett, C. F., Pogosova-Agadjanyan, E. L., Stirewalt, D. L., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1019055108 · Cited by 3,294 · see citing works
Characterization of extracellular circulating microRNA
Turchinovich, A., Weiz, L., Langheinz, A., & Burwinkel, B. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr254 · Cited by 1,941 · see citing works
Fong, M. Y., Zhou, W., Liu, L., Alontaga, A. Y., Chandra, M., Ashby, J., Chow, A., O’Connor, S. T. F., Li, S., Chin, A. R., et al. (2015) · Nature Cell Biology · doi:10.1038/ncb3094 · Cited by 1,118 · see citing works
Turturici, G., Tinnirello, R., Sconzo, G., & Geraci, F. (2014) · American Journal of Physiology-Cell Physiology · doi:10.1152/ajpcell.00228.2013 · Cited by 483 · see citing works
Exosome-mediated delivery of hydrophobically modified siRNA for huntingtin mRNA silencing
Didiot, M.-C., Hall, L. M., Coles, A. H., Haraszti, R. A., Godinho, B. M., Chase, K., Sapp, E., Ly, S., Alterman, J. F., Hassler, M. R., et al. (2016) · Molecular Therapy · doi:10.1038/mt.2016.126 · Cited by 483 · see citing works
Regulation of exosome production and cargo sorting
Wei, H., Chen, Q., Lin, L., Sha, C., Li, T., Liu, Y., Yin, X., Xu, Y., Chen, L., Gao, W., et al. (2021) · International Journal of Biological Sciences · doi:10.7150/ijbs.53671 · Cited by 385 · see citing works
Muscle releases alpha-sarcoglycan positive extracellular vesicles carrying miRNAs in the bloodstream
Guescini, M., Canonico, B., Lucertini, F., Maggio, S., Annibalini, G., Barbieri, E., Luchetti, F., Papa, S., & Stocchi, V. (2015) · PLoS ONE · doi:10.1371/journal.pone.0125094 · Cited by 228 · see citing works
“Recent studies have suggested that circulating miRNAs could mediate gene expression in target cells such as hormones and cytokines [13–15].”
BackgroundMicroRNAs in placental health and disease
Mouillet, J.-F., Ouyang, Y., Coyne, C. B., & Sadovsky, Y. (2015) · American Journal of Obstetrics and Gynecology · doi:10.1016/j.ajog.2015.05.057 · Cited by 195 · see citing works
Role of Alix in miRNA packaging during extracellular vesicle biogenesis
IAVELLO, A., FRECH, V. S. L., GAI, C., DEREGIBUS, M. C., QUESENBERRY, P. J., & CAMUSSI, G. (2016) · International Journal of Molecular Medicine · doi:10.3892/ijmm.2016.2488 · Cited by 175 · see citing works
Emerging role of microRNAs in major depressive disorder: diagnosis and therapeutic implications
Dwivedi, Y. (2014) · Dialogues in Clinical Neuroscience · doi:10.31887/dcns.2014.16.1/ydwivedi · Cited by 169 · see citing works
Fang, Y., Qiu, Q., Zhang, S., Sun, L., Li, G., Xiao, S., & Li, X. (2018) · Journal of Affective Disorders · doi:10.1016/j.jad.2017.11.090 · Cited by 90 · see citing works
Self-citationIftikhar, H., & Carney, G. E. (2016) · BioEssays · doi:10.1002/bies.201500130 · Cited by 87 · see citing works
Noncoding RNAs regulate NF-κB signaling to modulate blood vessel inflammation
Cheng, H. S., Njock, M.-S., Khyzha, N., Dang, L. T., & Fish, J. E. (2014) · Frontiers in Genetics · doi:10.3389/fgene.2014.00422 · Cited by 69 · see citing works
Tissue and circulating microRNA influence reproductive function in endometrial disease
Louise Hull, M., & Nisenblat, V. (2013) · Reproductive BioMedicine Online · doi:10.1016/j.rbmo.2013.07.012 · Cited by 69 · see citing works
Matsuzaka, Y., Tanihata, J., Komaki, H., Ishiyama, A., Oya, Y., Rüegg, U., Takeda, S.-I., & Hashido, K. (2016) · PLoS ONE · doi:10.1371/journal.pone.0167811 · Cited by 68 · see citing works
Zhu, J.-J., Liu, Y.-F., Zhang, Y.-P., Zhao, C.-R., Yao, W.-J., Li, Y.-S., Wang, K.-C., Huang, T.-S., Pang, W., Wang, X.-F., et al. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1700561114 · Cited by 56 · see citing works
Self-citationSegaran, R. C., Chan, L. Y., Wang, H., Sethi, G., & Tang, F. R. (2020) · Current Medicinal Chemistry · doi:10.2174/0929867327666200121122910 · Cited by 42 · see citing works
- Authors
- Wang, K., Zhang, S., Weber, J., Baxter, D., & Galas, D. J.
- Affiliations
- Institute for Systems Biology (US)
- Corresponding author
- Galas, David J.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2010-07-07
- Volume
- 38
- Issue
- 20
- Pages
- 7248-7259
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- PMC
- PMC2978372
- OpenAlex
- W2003206209
- Cited by
- 1,002
- References
- 37
- Citations by year
- 2026: 15 · 2025: 21 · 2024: 30 · 2023: 35 · 2022: 46 · 2021: 67 · 2020: 76 · 2019: 61 · 2018: 76 · 2017: 69 · 2016: 87 · 2015: 87 · 2014: 98 · 2013: 94 · 2012: 87
- FWCI
- 30.47
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Nucleic Acids Research (publishedVersion, cc-by-nc)
- PubMed Central (publishedVersion, cc-by-nc)
- PubMed (publishedVersion)
- HighWire Press Open Archive (submittedVersion)
- Funders
- Battelle
- Ohio State University
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Extracellular vesicles in disease
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › MicroRNA in disease regulation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Interference and Gene Delivery
- Keywords
- extracellular microRNAs, serum deprivation, intercellular communication, microvesicles, exosomes, extracellular vesicles, miRNA stability
- MeSH terms
- Nucleophosmin, Adenosine Triphosphate, Cell Communication, Cell Line, Humans, Nuclear Proteins, RNA-Binding Proteins, Culture Media, Serum-Free, RNA Stability, RNA Transport, MicroRNAs
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