Age‐associated increase in heterochromatic marks in murine and primate tissues
Open accessAbstract
Summary: Chromatin is highly dynamic and subject to extensive remodeling under many physiologic conditions. Changes in chromatin that occur during the aging process are poorly documented and understood in higher organisms, such as mammals. We developed an immunofluorescence assay to quantitatively detect, at the single cell level, changes in the nuclear content of chromatin‐associated proteins. We found increased levels of the heterochromatin‐associated proteins histone macro H2A (mH2A) and heterochromatin protein 1 beta (HP1β) in human fibroblasts during replicative senescence in culture, and for the first time, an age‐associated increase in these heterochromatin marks in several tissues of mice and primates. Mouse lung was characterized by monophasic mH2A expression histograms at both ages, and an increase in mean staining intensity at old age. In the mouse liver, we observed increased age‐associated localization of mH2A to regions of pericentromeric heterochromatin. In the skeletal muscle, we found two populations of cells with either low or high mH2A levels. This pattern of expression was similar in mouse and baboon, and showed a clear increase in the proportion of nuclei with high mH2A levels in older animals. The frequencies of cells displaying evidence of increased heterochromatinization are too high to be readily accounted for by replicative or oncogene‐induced cellular senescence, and are prominently found in terminally differentiated, postmitotic tissues that are not conventionally thought to be susceptible to senescence. Our findings distinguish specific chromatin states in individual cells of mammalian tissues, and provide a foundation to investigate further the progressive epigenetic changes that occur during aging.
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- Findingown data
mH2A and HP1β levels increase in human fibroblasts during replicative senescence in culture.
“We find increased levels of the heterochromatin-associated proteins histone macro H2A (mH2A) and heterochromatin protein 1 beta (HP1β) in human fibroblasts during replicative senescence in culture”
Quote in the paperSubstantial claim - Findingown data
In cultured fibroblasts, mH2A and HP1β nuclear content correlate strongly within individual cells across every replicative age.
“Double staining of cultures with antibodies against both mH2A and HP1β showed a high level of correlation at the single-cell level at all replicative ages.”
Quote in the paperSubstantial claim - Findingown data
The biphasic pattern of mH2A expression in skeletal muscle is similar in mouse and baboon.
“This pattern of expression was similar in mouse and baboon”
- Also stated in: § Discussion · plain
“The pattern of expression was very similar in mouse and baboon.”
Quote in the paperSubstantial claim - Also stated in: § Discussion · plain
- Findingown data
mH2A and HP1β nuclear staining intensity increases with passage in cultured human fibroblasts.
“Images acquired under these conditions for mH2A and HP1β (Fig. 1), two known components of SAHF, showed a clear passage-associated increase in nuclear staining intensity.”
Quote in the paperSubstantial claim - Findingown data
In mouse liver, mH2A localization to pericentromeric heterochromatin regions increases with age.
“In the mouse liver we observed increased age-associated localization of mH2A to regions of pericentromeric heterochromatin.”
- Also stated in: § Expression of heterochromatic marks in murine tissues · plain
“old nuclei typically display prominent mH2A foci that colocalize with the DAPI foci.”
Quote in the paperSubstantial claim- Rests on an assumption: Age-related differences in mH2A immunofluorescence intensity reflect differences in target protein amount rather than differences in antibody access, epitope availability, or tissue processing between young and old samples.
- Rests on an assumption: The young and old animals compared differ in age but not in other factors that would alter mH2A levels.
- Also stated in: § Expression of heterochromatic marks in murine tissues · plain
- Findingown data
Heterochromatin marks mH2A and HP1β increase with age in several tissues of mice and primates.
“for the first time, an age-associated increase in these heterochromatin marks in several tissues of mice and primates.”
Quote in the paperSubstantial claim - Findingown data
Cells at late passage have 3-5 times as much total protein as cells at early passage.
“our late passage cells contained 3–5-fold more total protein than early passage cells.”
Quote in the paperSubstantial claim - Findingown data
Increased heterochromatinization is prominently found in terminally differentiated, post-mitotic tissues not conventionally thought susceptible to senescence.
“and are prominently found in terminally differentiated, post mitotic tissues that are not conventionally thought to be susceptible to senescence.”
Quote in the paperSubstantial claim - Findingown data
Skeletal muscle contains two populations of cells with low or high mH2A levels.
“In skeletal muscle we found two populations of cells with either low or high mH2A levels.”
- Also stated in: § Expression of heterochromatic marks in murine tissues · plain
“Both age groups showed two distinct populations of nuclei with either low or high levels of mH2A”
Quote in the paperNot a substantial claim - Also stated in: § Expression of heterochromatic marks in murine tissues · plain
- Findingown data
HP1β protein expression is increased 2-fold in late passage human fibroblasts.
“and HP1β was increased 2-fold.”
Quote in the paperSubstantial claim - Findingown data
The proportion of skeletal muscle nuclei with high mH2A levels increases in older animals.
“showed a clear increase in the proportion of nuclei with high mH2A levels in older animals.”
- Also stated in: § Expression of heterochromatic marks in murine tissues · plain
“the proportion of nuclei in the low and high expression groups changed with age, with an increased fraction of cells displaying higher levels of mH2A in the old animals”
Quote in the paperSubstantial claim - Also stated in: § Expression of heterochromatic marks in murine tissues · plain
- Findingown data
mH2A and HP1β mRNA levels show only minimal changes under any condition.
“In contrast, only minimal changes in mH2A or HP1β mRNA levels were seen under any condition (Fig. S3).”
Quote in the paperNot a substantial claim - Findingown data
Mean mH2A staining intensity in mouse lung increases at old age.
“and an increase in mean staining intensity at old age.”
- Also stated in: § Expression of heterochromatic marks in murine tissues · plain
“the mean levels of mH2A calculated for groups of five young (5 month) and old (36 month) male animals showed a highly significant 1.9-fold increase in the old group (Fig. 4D).”
Quote in the paperSubstantial claim- Rests on an assumption: Age-related differences in mH2A immunofluorescence intensity reflect differences in target protein amount rather than differences in antibody access, epitope availability, or tissue processing between young and old samples.
- Rests on an assumption: The young and old animals compared differ in age but not in other factors that would alter mH2A levels.
- Also stated in: § Expression of heterochromatic marks in murine tissues · plain
- Findingown data
Mouse lung mH2A expression histograms are monophasic at both young and old ages.
“Mouse lung was characterized by monophasic mH2A expression histograms at both ages”
Quote in the paperNot a substantial claim - Findingown data
Careful examination of several human, primate, and murine tissues failed to demonstrate SAHF-like foci.
“Careful examination of several human, primate and murine tissues failed to demonstrate SAHF-like foci”
Quote in the paperSubstantial claim - Findingown data
mH2A levels increase with age in mouse skeletal muscle.
“Age-associated increases in mH2A levels were also readily apparent in skeletal muscle (Fig. 6A).”
Quote in the paperSubstantial claim- Rests on an assumption: Age-related differences in mH2A immunofluorescence intensity reflect differences in target protein amount rather than differences in antibody access, epitope availability, or tissue processing between young and old samples.
- Rests on an assumption: The young and old animals compared differ in age but not in other factors that would alter mH2A levels.
- Findingown data
The age-associated increase in mH2A affects mice near median lifespan and very old mice of both sexes.
“Examination of additional samples from 27 month old males confirmed that the increase in mH2A levels affects animals near their median lifespan as well as very old animals of both sexes.”
Quote in the paperSubstantial claim - Findingown data
Baboon skeletal muscle mH2A distributions are biphasic with distinct high- and low-intensity nuclei.
“As was the case with murine skeletal muscle, the distributions were clearly biphasic with distinct high and low intensity nuclei (Fig. 7B).”
Quote in the paperNot a substantial claim - Findingnone given
Mouse skeletal muscle shows very low frequencies of DDR-positive cells.
“Similarly, mouse muscle shows very low frequencies of DDR-positive cells”
Quote in the paperNot a substantial claim - Findingown data
Mean mH2A levels in mouse lung are 1.9-fold higher in old (36-month) than young (5-month) male mice, a highly significant difference.
“the mean levels of mH2A calculated for groups of five young (5 month) and old (36 month) male animals showed a highly significant 1.9-fold increase in the old group (Fig. 4D).”
Quote in the paperSubstantial claim- Rests on an assumption: Age-related differences in mH2A immunofluorescence intensity reflect differences in target protein amount rather than differences in antibody access, epitope availability, or tissue processing between young and old samples.
- Rests on an assumption: The young and old animals compared differ in age but not in other factors that would alter mH2A levels.
- Findingown data
Baboon skeletal muscle shows strong age-associated trends in mH2A levels.
“Examination of baboon skeletal muscle revealed strong age-associated trends (Fig. 7A).”
Quote in the paperSubstantial claim- Rests on an assumption: Age-related differences in mH2A immunofluorescence intensity reflect differences in target protein amount rather than differences in antibody access, epitope availability, or tissue processing between young and old samples.
- Rests on an assumption: The young and old animals compared differ in age but not in other factors that would alter mH2A levels.
- Findingown data
In old animals, 60-100% of cells (depending on tissue) display elevated mH2A levels.
“In contrast, we observe in old animals 60–100% of the cells (depending on the tissue) to display elevated mH2A levels.”
Quote in the paperSubstantial claim- Rests on an assumption: Age-related differences in mH2A immunofluorescence intensity reflect differences in target protein amount rather than differences in antibody access, epitope availability, or tissue processing between young and old samples.
- Rests on an assumption: The young and old animals compared differ in age but not in other factors that would alter mH2A levels.
- Findingown data
The increase in mH2A localization to pericentromeric heterochromatin also occurs in lung and skeletal muscle tissue.
“a finding that we subsequently extended to lung and skeletal muscle tissue”
Quote in the paperSubstantial claim- Rests on an assumption: mH2A and HP1β are constituents of heterochromatin.
- Findingown data
mH2A levels are elevated in lung nuclei of 24-month-old C57BL/6 female mice.
“Elevated levels of mH2A were readily apparent in lung nuclei of 24 month old C57BL/6 females (Fig. 4A).”
Quote in the paperSubstantial claim- Rests on an assumption: Age-related differences in mH2A immunofluorescence intensity reflect differences in target protein amount rather than differences in antibody access, epitope availability, or tissue processing between young and old samples.
- Rests on an assumption: The young and old animals compared differ in age but not in other factors that would alter mH2A levels.
- Findingcitation
In the tissues examined (lung, liver, dermis, skeletal muscle), SA-β-Gal-positive cells are in the range of 2-5%.
“When stained for the senescence-associated β-galactosidase (SA-β-Gal) marker, the tissues examined here (lung, liver, dermis, skeletal muscle) show positive cells in the range of 2–5% (Dimri et al., 1995; Wang et al., 2009) (our data).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites Dimri et al., 1995
Not checked in the free run.
- cites Wang et al., 2009
Not checked in the free run.
- Findingown data
The same age-associated redistribution of mH2A to pericentromeric foci occurs in mouse lung nuclei.
“Examination of lung nuclei, which are smaller and do not undergo polyploidization revealed the same phenomenon (Fig. 5B).”
Quote in the paperSubstantial claim- Rests on an assumption: Age-related differences in mH2A immunofluorescence intensity reflect differences in target protein amount rather than differences in antibody access, epitope availability, or tissue processing between young and old samples.
- Rests on an assumption: The young and old animals compared differ in age but not in other factors that would alter mH2A levels.
- Findingown data
mH2A levels in mouse liver do not increase when assessed by immunoblotting and normalized to DNA or H2B.
“Likewise, mH2A levels did not increase when assessed by immunoblotting and normalized to either DNA or H2B.”
Quote in the paperNot a substantial claim - Findingown data
The fraction of mouse skeletal muscle nuclei with high mH2A levels increases with age.
“the proportion of nuclei in the low and high expression groups changed with age, with an increased fraction of cells displaying higher levels of mH2A in the old animals (Fig. 6C).”
Quote in the paperSubstantial claim - Findingown data
In liver cells, mH2A localization to pericentromeric heterochromatin clearly increases with age.
“The prominent pericentromeric heterochromatin found in these cells allowed us, however, to detect a clear increase of mH2A localization to this compartment”
Quote in the paperSubstantial claim- Rests on an assumption: mH2A and HP1β are constituents of heterochromatin.
- Findingown data
HP1β shows the same age-associated trends and patterns in mouse tissues as mH2A.
“Finally, using HP1β antibody in the immunofluorescence and imunoblotting assays showed the same trends and patterns for this antigen as seen with mH2A.”
Quote in the paperNot a substantial claim - Findingown data
The ratio of low- to high-intensity mH2A nuclei in baboon skeletal muscle changes more than 3-fold from 1.45 in young animals to 0.44 in old animals.
“the shift in the ratio of low to high intensity nuclei was very pronounced, changing more than 3-fold from 1.45 in the young animals to 0.44 in the old animals (Fig. 7C).”
Quote in the paperSubstantial claim - Findingown data
Immunoblotting of total lung extracts confirms an age-associated increase in mH2A levels.
“Immunoblotting analysis of total lung tissue extracts confirmed the age-associated increase of mH2A levels (Fig. 4C).”
Quote in the paperSubstantial claim - Findingown data
Higher mH2A levels in old mouse skeletal muscle were confirmed by immunoblotting.
“Higher levels of mH2A in old animals were also confirmed by immunoblotting (data not shown).”
Quote in the paperNot a substantial claim - Findingown data
The authors show, for the first time, an age-associated increase in these heterochromatin marks in several mouse and primate tissues.
“and for the first time, an age-associated increase in these heterochromatin marks in several tissues of mice and primates.”
Quote in the paperSubstantial claim - Findingown data
In mouse and baboon skeletal muscle, approximately 40% of nuclei display high mH2A levels even in young animals.
“A significant number of nuclei (approximately 40% in both mouse and baboon) displayed high mH2A levels even in young animals.”
Quote in the paperNot a substantial claim - Findingown data
Dermal fibroblasts in baboon skin biopsies show a more subtle increase in mH2A levels with age.
“analysis of dermal fibroblasts in skin biopsies revealed a more subtle increase in mH2A levels (Fig. S4).”
Quote in the paperNot a substantial claim - Findingown data
In mouse skeletal muscle, both age groups show biphasic mH2A histograms with distinct low and high populations and few intermediate nuclei.
“Both age groups showed two distinct populations of nuclei with either low or high levels of mH2A, with relatively few nuclei falling in between, giving rise to biphasic histogram distributions (Fig. 6B).”
Quote in the paperNot a substantial claim - Findingown data
mH2A undergoes significant redistribution within nuclei of old mouse liver.
“We did however observe a significant redistribution of mH2A within the nuclei of old animals (Fig 5A).”
Quote in the paperSubstantial claim- Rests on an assumption: Age-related differences in mH2A immunofluorescence intensity reflect differences in target protein amount rather than differences in antibody access, epitope availability, or tissue processing between young and old samples.
- Rests on an assumption: The young and old animals compared differ in age but not in other factors that would alter mH2A levels.
- Findingown data
Using the assay, the authors show increased levels of mH2A and HP1β in human fibroblasts undergoing replicative senescence in culture.
“We use the assay to demonstrate increased levels of the heterochromatin-associated proteins mH2A and HP1β in human fibroblasts during replicative senescence in culture”
Quote in the paperSubstantial claim - Premisecitation
Chromatin is subject to extensive age-associated remodeling.
“it is rapidly becoming apparent that it may be subject to extensive age-associated remodeling (Fraga et al., 2005; Sedivy et al., 2008).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites Fraga et al., 2005
Not checked in the free run.
- cites Sedivy et al., 2008
Not checked in the free run.
- Study design and conductown data
An immunofluorescence assay was developed that quantitatively measures nuclear content of chromatin-associated proteins at the single-cell level.
“We developed an immunofluorescence assay to quantitatively detect, at the single cell level, changes in the nuclear content of chromatin-associated proteins.”
Quote in the paperSubstantial claim - Interpretationown data
The rise in mH2A and HP1β with passage is not simply due to cells ceasing to cycle.
“No increase was seen in early passage cells rendered quiescent by contact inhibition and serum deprivation, indicating that the effect is not a general consequence of cell cycle arrest.”
Quote in the paperSubstantial claim - Premisecitation
Aging tissues are mosaics of normal cells with interspersed senescent or age-compromised cells.
“our work, as well as other studies on single cells (Bahar et al., 2006), indicate that aging tissues are mosaics of normal cells with interspersed senescent (or otherwise age-compromised) cells.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Bahar et al., 2006
Not checked in the free run.
- Study design and conductown data
Saturating antibody concentrations for mH2A and HP1β were at least 10-fold higher than typically recommended.
“These saturating concentrations were found to be at least 10-fold higher (Table S1) than typically recommended in standard immunofluorescence assays.”
Quote in the paperSubstantial claim - Interpretationreasoning
The frequencies of cells with increased heterochromatinization are too high to be readily explained by replicative or oncogene-induced cellular senescence.
“The frequencies of cells displaying evidence of increased heterochromatinization are too high to be readily accounted for by replicative or oncogene-induced cellular senescence”
Quote in the paperSubstantial claim - Premisecitation
In skeletal muscle, p16 shows only a very marginal increase with age.
“skeletal muscle also displays very marginal age-asssociated upregulation of p16 (Edwards et al., 2007)”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Edwards et al., 2007
Not checked in the free run.
- Interpretationown data
The findings point to rising mH2A amounts within constitutive heterochromatin regions.
“Our data are indicative of increasing concentrations of mH2A in regions of constitutive heterochromatin”
Quote in the paperSubstantial claim- Rests on an assumption: The anti-centromere autoantibody used to verify pericentromeric localization recognizes mouse centromeres specifically.
- Study design and conductown data
A human anti-centromere autoantibody was used to confirm that mH2A foci in mouse liver lie at pericentromeric regions.
“The pericentromeric localization of the mH2A foci was verified using a human anti-centromere autoantibody.”
Quote in the paperNot a substantial claim- Rests on an assumption: The anti-centromere autoantibody used to verify pericentromeric localization recognizes mouse centromeres specifically.
- Interpretationown data
In mouse and baboon, SAHF do not build up during aging as discrete microscopic structures.
“we believe it is reasonable to conclude that SAHF do not accumulate with aging in vivo, at least as morphologically distinct structures that can be visualized by microscopy in mouse or baboon.”
Quote in the paperSubstantial claim - Interpretationreasoning
The increased mH2A levels observed in vivo are unlikely to represent only senescent cells.
“Several lines of evidence suggest that this is unlikely to be the whole story.”
Quote in the paperSubstantial claim - Interpretationreasoning
Mature myocytes with high mH2A levels are unlikely to be senescent, under current definitions and understanding of cellular senescence.
“It is thus unlikely that the mature myocytes with high mH2A levels are senescent, at least using our current definitions and understanding of cellular senescence.”
Quote in the paperSubstantial claim - Study design and conductown data
The paper describes an immunofluorescence microscopy assay that can quantitatively detect, at the single-cell level, changes in nuclear content of chromatin-associated proteins.
“In this communication we describe the development of an assay, based on immunofluorescence microscopy, capable of quantitatively detecting, at the single cell level, changes in the nuclear content of chromatin associated proteins.”
Quote in the paperSubstantial claim - Premisecitation
In baboons, the number of cells did not rise with age.
“number did not increase with age in the baboon (Jeyapalan et al., 2007).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Jeyapalan et al., 2007
Not checked in the free run.
- Interpretationreasoning
It is unlikely that all mH2A-positive cells in aged mouse lung are senescent.
“While the DDR-positive cells may be senescent, we consider it unlikely that all of the mH2A-positive cells are senescent.”
Quote in the paperSubstantial claim - Interpretationown data
Most normal cells in old mouse lung that show no DNA damage response still have higher mH2A levels.
“it is also evident that the majority of normal cells in the lung without any evidence of DDR display elevated mH2A levels with age.”
Quote in the paperSubstantial claim - Study design and conductown data
The fold-change increase in mH2A measured by immunoblotting and immunofluorescence correlates excellently.
“The correlation between the fold-change increase observed by the immunoblotting and immunofluorescence methods was excellent (Fig. 4D).”
Quote in the paperNot a substantial claim
- The quote only partly states this claim. 3
- May combine two claims. 26
- Classified as probably not a substantial claim. 19
The quote only partly states this claim.
Findingown datamH2A protein expression is increased 3-fold in late passage human fibroblasts.
“We found that mH2A expression was increased 3-fold in late passage cells”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataIn human fibroblasts approaching senescence, mH2A upregulation correlates with p16 upregulation, while γH2AX or 53BP1 upregulation does not correlate with p16.
“We have also observed no correlation between the upregulation of γ H2AX or 53BP1 and p16, but we did observe a correlation between the upregulation of mH2A and p16 (data not shown).”
Quote in the paperSubstantial claimThe quote only partly states this claim.
Findingown dataIn LF1 human diploid fibroblasts, mH2A increase occurs with essentially the same kinetics as SA-β-Gal and SAHF as cells approach senescence.
“We observed the same relationship in LF1 HDF using the quantitative mH2A assay (data not shown).”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataThe overall mean mH2A intensity in old baboon skin specimens increased but fell just below statistical significance (p = 0.065).
“The overall mean intensity in the old specimens increased, but fell just below statistical significance (p = 0.065).”
Quote in the paperNot a substantial claimClassified as probably not a substantial claim.
Findingown dataThe authors have recently been able to obtain quantitative information on H3K9Me3 and H3K27Me3.
“we have recently been able to obtain quantitative information on H3K9Me3 and H3K27Me3.”
Quote in the paperSubstantial claimMay combine two claims. The quote only partly states this claim.
FindingcitationThe authors confirmed in baboon muscle that DDR-positive cell frequency is very low and does not increase with age.
“a finding that we confirmed in baboon muscle (Jeyapalan et al., 2007).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Jeyapalan et al., 2007
Not checked in the free run.
May combine two claims.
Findingown dataTotal mH2A intensity in mouse liver increases with age, but normalized mH2A intensity does not increase significantly because old liver nuclei are larger and more polyploid.
“Examination of liver tissue showed that total mH2A intensity increased with age; however, because of a significant increase in the size and volume of the liver nuclei in old animals (due to the age-associated polyploidization seen in this tissue) the normalized mH2A intensity did not increase significantly.”
Quote in the paperSubstantial claim- Rests on an assumption: Age-related differences in mH2A immunofluorescence intensity reflect differences in target protein amount rather than differences in antibody access, epitope availability, or tissue processing between young and old samples.
- Rests on an assumption: The young and old animals compared differ in age but not in other factors that would alter mH2A levels.
May combine two claims.
Findingown dataIn young mouse liver nuclei, mH2A staining is fairly uniform, while old nuclei show prominent mH2A foci overlapping DAPI foci.
“while young nuclei stain relatively uniformly with mH2A, old nuclei typically display prominent mH2A foci that colocalize with the DAPI foci.”
Quote in the paperSubstantial claim- Rests on an assumption: Age-related differences in mH2A immunofluorescence intensity reflect differences in target protein amount rather than differences in antibody access, epitope availability, or tissue processing between young and old samples.
- Rests on an assumption: The young and old animals compared differ in age but not in other factors that would alter mH2A levels.
May combine two claims.
Findingown dataIn liver, overall mH2A levels increase with age, but age-related polyploidization obscures this increase, so the ratio of mH2A to DAPI changes little.
“In the liver, while we saw an overall increase in mH2A levels, this was obscured by the polyploidization that occurs with age in this tissue, so the ratios of mH2A to DAPI did not change much.”
Quote in the paperSubstantial claim- Rests on an assumption: Polyploidization occurs with age in liver tissue.
May combine two claims.
FindingcitationFewer than 2% of baboon skeletal muscle cells show telomeric damage, and this proportion stays constant with age.
“we observed very low levels (<2%) of cells with telomeric damage, and their number did not increase with age in the baboon (Jeyapalan et al., 2007).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Jeyapalan et al., 2007
Not checked in the free run.
May combine two claims.
Findingown dataIn mouse skeletal muscle, SA-β-Gal-positive cells are rare (<1%) and do not become more frequent with age.
“mouse skeletal muscle contains very few SA-β-Gal positive cells (<1%) and their frequency does not increase with age (our observations).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataIn old mice, lung mH2A histograms are broadened, shifted to higher intensities, and often have high-intensity shoulders.
“In old animals the histograms were broadened, shifted to higher intensities, and often displayed high intensity shoulders.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataIn young mouse lung and liver, about 30% of nuclei have at least one mH2A-positive pericentromeric focus, and this number doubles in older animals.
“In both lung and liver, approximately 30% of nuclei had at least one mH2A-postive pericentromeric focus in young animals, while the number of nuclei containing mH2A-positive foci doubled in older animals (Fig. 5C).”
Quote in the paperSubstantial claim- Rests on an assumption: Age-related differences in mH2A immunofluorescence intensity reflect differences in target protein amount rather than differences in antibody access, epitope availability, or tissue processing between young and old samples.
- Rests on an assumption: The young and old animals compared differ in age but not in other factors that would alter mH2A levels.
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationSAHF contain HP1, mH2A, and H3K9Me3.
“SAHF contain heterochromatin protein 1 (HP1), the histone variant macro H2A (mH2A) and repressive histone marks such as histone H3 trimethylated on lysine 9 (H3K9Me3).”
Quote in the paperNot a substantial claimMay combine two claims.
Study design and conductown dataThe increases in mH2A and HP1β in late passage cells are statistically significant across three separate experiments and correlate with microscopic assay results.
“Both results were statistically significant across three separate experiments and correlate well with the increases observed with the microscopic assay.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationGlobal DNA methylation decreases in aging cells and organisms.
“Global decreases in DNA methylation have been documented in aging cells and organisms (Wilson et al., 1987; Sedivy et al., 2008; Calvanese et al., 2009).”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites Wilson et al., 1987
Not checked in the free run.
- cites Sedivy et al., 2008
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- cites Calvanese et al., 2009
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationReplicative senescence due to replicative exhaustion is caused by telomere shortening.
“The underlying cause of senescence due to replicative exhaustion is telomere shortening (Bodnar et al., 1998; Wright & Shay, 2002).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Bodnar et al., 1998
Not checked in the free run.
- cites Wright & Shay, 2002
Not checked in the free run.
May combine two claims.
Study design and conductown dataIn human fibroblasts, counts of cells, DNA amounts, and H2B or H3 levels remain tightly correlated and unchanged at every replicative age.
“We found that cell number, DNA content, and H2B or H3 expression were very closely correlated and constant across all replicative ages.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataThe results support placing γH2AX, 53BP1, and p21 together in one pathway, and HIRA, mH2A, and p16 together in a separate pathway.
“These data are consistent with γ H2AX, 53BP1 and p21 being in one pathway, and with HIRA, mH2A and p16 being in a distinct pathway.”
Quote in the paperSubstantial claimMay combine two claims.
Study design and conductown dataFor abundant chromatin proteins, the dilutions usually advised do not fall within the linear response range; one must titrate to saturating concentrations for accurate quantification.
“for abundant proteins, such as chromatin components, recommended antibody dilutions are not in the linear response range. It is first necessary to titrate the antibody concentration such that using either more antibody or longer incubation times does not result in increased signal.”
Quote in the paperSubstantial claimClassified as probably not a substantial claim.
Premisenone givenWhether SAHF form in an organismal context is not known.
“but whether SAHF form in an organismal context is not known.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationA terminal step of senescence induced by telomere exhaustion, oncogenes, and genotoxic stress is extensive heterochromatinization and formation of SAHF.
“A terminal step of senescence frequently induced by telomere exhaustion, oncogenes and genotoxic stress is extensive heterochromatinization and formation of nuclear structures designated senescence-associated heterochromatin foci (SAHF) (Narita et al., 2003).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Narita et al., 2003
Not checked in the free run.
May combine two claims.
Interpretationown dataBecause mouse lung mH2A histograms lack separate peaks, the authors infer that every lung cell type shows the age-related mH2A rise.
“The absence of distinct subpopulations in our immunofluorescence data (which would appear as shoulders or multiple peaks in the histograms) indicate that all cell types are affected by increased mH2A levels, although it remains possible that some cell types may be affected more than others.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationSimilar findings to the liver mH2A localization increase have been reported in mouse liver using an H3K9Me3 antibody.
“(very similar findings have recently been reported in mouse liver using an antibody to H3K9Me3 (Jin et al., 2010)).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Jin et al., 2010
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
InterpretationreasoningAnother advantage is that only a small amount of biological material is needed, at the limit a handful of 6-8 μm tissue sections, allowing examination of microscopic structures such as stem cells in their niches or limited archival material.
“Another important advantage is the small amount of biological material that is needed (at the limit, a handful of 6–8 μm tissue sections) allowing the examination of microscopic structures, such as stem cells in their native niches, or limited and valuable archival material.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataIn immunoblots, both antibodies visualize a single major band for mH2A1.1 or mH2A1.2, depending on the tissue.
“In immunoblots, both antibodies visualize a single major band for mH2A1.1 or mH2A1.2, depending on the tissue.”
Quote in the paperNot a substantial claimMay combine two claims.
InterpretationcitationThe age-associated increase in heterochromatin marks found here and in other studies contrasts with the well-documented age-associated decrease in DNA methylation.
“The age-associated increase of heterochromatin marks documented here and in other recent studies (Sarg et al., 2002; Jin et al., 2010; Wood et al., 2010) contrasts with the well documented decrease in DNA methylation (Sedivy et al., 2008; Calvanese et al., 2009).”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites Sarg et al., 2002
Not checked in the free run.
- cites Jin et al., 2010
Not checked in the free run.
- cites Wood et al., 2010
Not checked in the free run.
- Rests on an assumption: mH2A and HP1β are constituents of heterochromatin.
Probably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataThe independently raised mH2A1.1 and mH2A1.2 antibodies behaved equivalently in all assays presented.
“The independently raised mH2A1.1. and mH2A1.2 antibodies behaved equivalently in all the assays presented in this communication.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
InterpretationreasoningThe principles of the assay can be generalized to any nuclear antigen of interest.
“but the principles of the assay are generalizable to any nuclear antigen of interest.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductreasoningThe resulting antisera react with both mH2A1.1 and mH2A1.2 proteins.
“Not surprisingly, the resulting antisera react with both the mH2A1.1 and mH2A1.2 proteins.”
Quote in the paperNot a substantial claimMay combine two claims.
InterpretationcitationThese results together are consistent with the authors' findings and indicate an increase in transcriptionally repressive heterochromatin, especially at gene coding regions.
“Together, these results are consistent with our findings and indicative an increase in transcriptionally repressive heterochromatin, particularly at gene coding regions.”
Quote in the paperSubstantial claim- Rests on an assumption: mH2A and HP1β are constituents of heterochromatin.
May combine two claims.
PremisecitationIn mouse muscle, DDR-positive cells occur at very low frequencies and their frequency does not increase with age.
“Similarly, mouse muscle shows very low frequencies of DDR-positive cells which do not increase with age (Wang et al., 2009)”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Wang et al., 2009
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductreasoningLike any immunofluorescence-based assay, it can be limited by the availability of antibodies with adequate affinity and limited cross-reactivity.
“As is the case for any immunofluorescence-based assay, it can be limited by the availability of antibodies of adequate affinity and limited cross-reactivity.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationH3K9Me3 and HP1 levels increase with age, suggesting strong conservation of these processes.
“Of relevance to our findings, the levels of H3K9Me3 and HP1 increased with age, hinting at strong conservation in these processes.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Wood et al., 2010
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
InterpretationreasoningThe most likely explanation for the weaker skin mH2A age trend is environmental exposure obscuring an underlying age-associated pattern.
“The most likely explanation is that the skin is subject to environmental exposure, which could obscure an underlying age-associated pattern.”
Quote in the paperNot a substantial claimMay combine two claims.
Study design and conductreasoningThe assay was extensively developed and validated by immunoblotting and can accurately assess differences of 1.5-fold, or lower with sufficiently large numbers of cells scored.
“The assay has undergone extensive development and validation by immunoblotting, and is capable of accurately assessing differences of 1.5-fold (and even lower if sufficiently large numbers of cells are scored).”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataIn addition to overall increases in mH2A in some tissues, mH2A undergoes profound age-associated redistribution.
“Thus, in addition to an overall increase in mH2A levels in certain tissues, mH2A can also undergo a profound age-associated redistribution.”
Quote in the paperSubstantial claimClassified as probably not a substantial claim.
Premisecitationp16 is an important marker of cellular senescence.
“another important marker of senescence (Krishnamurthy et al., 2004)”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Krishnamurthy et al., 2004
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataControl immunofluorescence experiments using mH2A1 knockout mouse MEF and tissues assessed nonspecific background.
“Control immunofluorescence experiments using mH2A1 knockout mouse MEF and tissues to assess nonspecific background are shown in Fig. S5.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductreasoningThe authors focused on mH2A and HP1β, known heterochromatin constituents, because they could obtain very good antibodies against them.
“Here we have focused on mH2A and HP1β, two known constituents of heterochromatin against which we were able to locate very good antibodies”
Quote in the paperNot a substantial claim- Rests on an assumption: mH2A and HP1β are constituents of heterochromatin.
Classified as probably not a substantial claim. May combine two claims.
Study design and conductnone givenAll microscope settings and exposure times were set below saturation and kept constant for all images in one experiment.
“All microscope settings and exposure times were set to collect images below saturation and were kept constant for all images taken in one experiment.”
Quote in the paperSubstantial claimMay combine two claims.
InterpretationreasoningThe additional mH2A in old cells is targeted, at least partly, to constitutive heterochromatin, though this does not explain the overall increase, and higher signal is seen throughout the nucleus.
“It thus appears that the additional mH2A in old cells is targeted, at least in part, to constitutive heterochromatin, although this does not account for the overall increase, and higher signal is evident throughout the nucleus.”
Quote in the paperSubstantial claim- Rests on an assumption: mH2A and HP1β are constituents of heterochromatin.
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationLittle is known about the epigenetics of aging, but chromatin is subject to profound age-associated changes.
“We still know very little about the epigenetics of aging, but it is rapidly coming to light that chromatin is subject to profound age-associated changes (Fraga et al., 2005).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Fraga et al., 2005
Not checked in the free run.
The paper relies on this without support.
The anti-centromere autoantibody used to verify pericentromeric localization recognizes mouse centromeres specifically.
“The pericentromeric localization of the mH2A foci was verified using a human anti-centromere autoantibody.”
The paper relies on this without support.
Age-related differences in mH2A immunofluorescence intensity reflect differences in target protein amount rather than differences in antibody access, epitope availability, or tissue processing between young and old samples.
“Elevated levels of mH2A were readily apparent in lung nuclei of 24 month old C57BL/6 females (Fig. 4A).”
The paper relies on this without support.
The young and old animals compared differ in age but not in other factors that would alter mH2A levels.
“the mean levels of mH2A calculated for groups of five young (5 month) and old (36 month) male animals showed a highly significant 1.9-fold increase in the old group (Fig. 4D).”
The paper relies on this without support.
mH2A and HP1β are constituents of heterochromatin.
“two known constituents of heterochromatin”
The paper relies on this without support.
Polyploidization occurs with age in liver tissue.
“the polyploidization that occurs with age in this tissue”
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The same changes documented in ageing cells, such as demethylation of retrotransposons and satellite DNA and high levels of their transcription, are also observed in human cancer.
“Of note, the same changes documented in ageing cells, such as demethylation of retrotransposons and satellite DNA and high levels of their transcription, are also observed in human cancer 73-75 .”
From The roles of DNA, RNA and histone methylation in ageing and cancer (2019) · cites this paper as [74]
Demethylation of retrotransposons and satellites and high levels of their transcription are observed in ageing cells and in human cancer.
“Demethylation of retrotransposons and satellites and high levels of their transcription are observed in ageing cells 47 and in human cancer 73-75 .”
From The roles of DNA, RNA and histone methylation in ageing and cancer (2019) · cites this paper as [74]
SAHF contain silent heterochromatin domains consisting of H3K9Me2/3, macroH2A, and HP1 proteins.
“Structurally, SAHF contain silent hetero-chromatin domains consisting of a di-or tri-methylated lysine 9 of histone H3 (H3K9Me2/3), a histone H2A variant (macroH2A), and heterochromatin protein 1 (HP1) proteins [74, 76, 77].”
From Markers of cellular senescence. Telomere shortening as a marker of cellular senescence (2016) · cites this paper as [77]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
Each contradiction between two passages listed here was confirmed by an independent check.
Old lung histograms both have and lack shoulders
MajorThe results say old mouse lung histograms often have high-intensity shoulders. The discussion instead treats shoulders as absent when inferring that there are no distinct cell subpopulations.
“In old animals the histograms were broadened, shifted to higher intensities, and often displayed high intensity shoulders.”
“The absence of distinct subpopulations in our immunofluorescence data (which would appear as shoulders or multiple peaks in the histograms) indicate that all cell types are affected by increased mH2A levels, although it remains possible that some cell types may be affected more than others.”
Mouse muscle DNA-damage frequency is described as unchanged despite rising fivefold
MinorThe paper reports DDR-positive cells in mouse skeletal muscle increasing from 0.3% in young animals to 1.5% in old animals, but later says their frequency does not increase with age.
“Wang et al. (2009) reported frequencies of DNA damage foci in lung, liver and skeletal muscle of 6.7%, 8.4% and 0.3% in young mice, and 19%, 17% and 1.5% in old animals.”
“Similarly, mouse muscle shows very low frequencies of DDR-positive cells which do not increase with age (Wang et al., 2009), a finding that we confirmed in baboon muscle (Jeyapalan et al., 2007).”
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“Another method to determine the frequency of senescent cells is to score cells that stain positive for DNA damage foci-associated proteins c-H2AX or 53BP1 (Bartkova et al., 2006; Di Micco et al., 2006; Herbig et al., 2006; Jeyapalan et al., 2007; Sedelnikova et al., 2008; Wang et al., 2009; Le et al., 2010).”
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Self-citationThe Heterochromatin Protein 1 (HP1) Family: Put Away a Bias toward HP1
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“Additionally, we observed distended satellite heterochromatin in senescent cells within PIN cancer tissues, which is significant because other heterochromatin changes (SAHF) have not been observed in vivo (Kreiling et al., 2010).”
BackgroundThe hallmarks of fibroblast ageing
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Dubey, S. K., Dubey, R., Prajapati, S. C., Jung, K., Mohan, K., Liu, X., Roney, J., Tian, W., Abney, J., Giarmarco, M. M., et al. (2024) · Aging Cell · doi:10.1111/acel.14108 · Cited by 27 · see citing works
Gut microbiota–astrocyte axis: new insights into age-related cognitive decline
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Potential of Mesenchymal Stem Cells in the Rejuvenation of the Aging Immune System
Yeo, G. E. C., Ng, M. H., Nordin, F., & Law, J. X. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22115749 · Cited by 27 · see citing works
Cellular senescence in normal and premature lung aging
Bartling, B. (2013) · Zeitschrift für Gerontologie und Geriatrie · doi:10.1007/s00391-013-0543-3 · Cited by 24 · see citing works
Ohsawa, R., Seol, J.-H., & Tyler, J. K. (2013) · Frontiers in Genetics · doi:10.3389/fgene.2013.00136 · Cited by 23 · see citing works
Comparison of several commonly used detection indicators of cell senescence
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Increased Mammogram-Induced DNA Damage in Mammary Epithelial Cells Aged In Vitro
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- Authors
- Kreiling, J. A., Tamamori‐Adachi, M., Sexton, A. N., Jeyapalan, J. C., Munoz‐Najar, U., Peterson, A. L., Manivannan, J., Rogers, E. S., Pchelintsev, N. A., Adams, P. D., & Sedivy, J. M.
- Affiliations
- Brown University (US)
- Cancer Research UK Scotland Institute (GB)
- Corresponding author
- Kreiling, Jill A.
- Sedivy, John M.
- Venue
- Aging Cell
- Publisher
- Wiley
- Published
- 2010-12-30
- Volume
- 10
- Issue
- 2
- Pages
- 292-304
- ISSN
- 1474-9718 (ISSN-L)
- 1474-9726
- PMC
- PMC3079313
- OpenAlex
- W1918957812
- Cited by
- 152
- References
- 62
- Citations by year
- 2026: 2 · 2025: 3 · 2024: 10 · 2023: 7 · 2022: 6 · 2021: 12 · 2020: 6 · 2019: 14 · 2018: 14 · 2017: 13 · 2016: 10 · 2015: 13 · 2014: 8 · 2013: 16 · 2012: 13
- FWCI
- 4.43
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Aging Cell (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam) (submittedVersion)
- Institutional Repositories DataBase (IRDB) (submittedVersion)
- Funders
- Brown University
- University of Pennsylvania
- National Institutes of Health
- Biotechnology and Biological Sciences Research Council (BB/H021019/1)
- National Institute on Aging (P01AG031862, R37AG016694)
- National Center for Research Resources (P20RR015578)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Nuclear Structure and Function
- Health Sciences › Medicine › Physiology › Telomeres, Telomerase, and Senescence
- Keywords
- aging, heterochromatin, HP1β, chromatin remodeling, replicative senescence, pericentromeric heterochromatin, skeletal muscle, lung, liver, postmitotic tissues, epigenetic modifications, baboons
- MeSH terms
- Chromobox Protein Homolog 5, Aging, Animals, Fibroblasts, Fluorescent Antibody Technique, Heterochromatin, Humans, Liver, Lung, Primates, Muscle, Skeletal, Epigenesis, Genetic, Mice
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