Epigenetic mechanisms of longevity and aging
Open accessAbstract
Aging is an inevitable outcome of life, characterized by progressive decline in tissue and organ function and increased risk of mortality. Accumulating evidence links aging to genetic and epigenetic alterations. Given the reversible nature of epigenetic mechanisms, these pathways provide promising avenues for therapeutics against age-related decline and disease. In this review, we provide a comprehensive overview of epigenetic studies from invertebrate organisms, vertebrate models, tissues, and in vitro systems. We establish links between common operative aging pathways and hallmark chromatin signatures that can be used to identify "druggable" targets to counter human aging and age-related disease.
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Aging and aging-related diseases: from molecular mechanisms to interventions and treatments
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Epigenetic plasticity and the hallmarks of cancer
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Cytoplasmic chromatin triggers inflammation in senescence and cancer
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Self-citationBiomolecular condensates at the nexus of cellular stress, protein aggregation disease and ageing
Alberti, S., & Hyman, A. A. (2021) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-020-00326-6 · Cited by 1,135 · see citing works
Mitochondrial dysfunction in cell senescence and aging
Miwa, S., Kashyap, S., Chini, E., & von Zglinicki, T. (2022) · Journal of Clinical Investigation · doi:10.1172/jci158447 · Cited by 1,061 · see citing works
In Vivo Amelioration of Age-Associated Hallmarks by Partial Reprogramming.
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Immunosenescence: molecular mechanisms and diseases
Liu, Z., Liang, Q., Ren, Y., Guo, C., Ge, X., Wang, L., Cheng, Q., Luo, P., Zhang, Y., & Han, X. (2023) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-023-01451-2 · Cited by 1,023 · see citing works
Unmasking senescence: context-dependent effects of SASP in cancer
Faget, D. V., Ren, Q., & Stewart, S. A. (2019) · Nature Reviews Cancer · doi:10.1038/s41568-019-0156-2 · Cited by 863 · see citing works
Reprogramming to recover youthful epigenetic information and restore vision
Lu, Y., Brommer, B., Tian, X., Krishnan, A., Meer, M., Wang, C., Vera, D. L., Zeng, Q., Yu, D., Bonkowski, M. S., et al. (2020) · Nature · doi:10.1038/s41586-020-2975-4 · Cited by 820 · see citing works
Benefits of Metformin in Attenuating the Hallmarks of Aging
Kulkarni, A. S., Gubbi, S., & Barzilai, N. (2020) · Cell Metabolism · doi:10.1016/j.cmet.2020.04.001 · Cited by 766 · see citing works
Metabolic Flexibility as an Adaptation to Energy Resources and Requirements in Health and Disease
Smith, R. L., Soeters, M. R., Wüst, R. C. I., & Houtkooper, R. H. (2018) · Endocrine Reviews · doi:10.1210/er.2017-00211 · Cited by 787 · see citing works
Loss of epigenetic information as a cause of mammalian aging
Yang, J.-H., Hayano, M., Griffin, P. T., Amorim, J. A., Bonkowski, M. S., Apostolides, J. K., Salfati, E. L., Blanchette, M., Munding, E. M., Bhakta, M., et al. (2023) · Cell · doi:10.1016/j.cell.2022.12.027 · Cited by 643 · see citing works
Self-citationThe roles of DNA, RNA and histone methylation in ageing and cancer
Michalak, E. M., Burr, M. L., Bannister, A. J., & Dawson, M. A. (2019) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-019-0143-1 · Cited by 549 · see citing works
Molecular and physiological manifestations and measurement of aging in humans
Khan, S. S., Singer, B. D., & Vaughan, D. E. (2017) · Aging Cell · doi:10.1111/acel.12601 · Cited by 530 · see citing works
The ageing epigenome and its rejuvenation
Zhang, W., Qu, J. T., Liu, G., & Belmonte, J. C. I. (2020) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-019-0204-5 · Cited by 472 · see citing works
The role of retrotransposable elements in ageing and age-associated diseases
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Evaluating intrinsic and non-intrinsic cancer risk factors
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Aging Hallmarks and the Role of Oxidative Stress
Maldonado, E., Morales, S., Urbina, F., & Solari, A. (2023) · Antioxidants · doi:10.3390/antiox12030651 · Cited by 454 · see citing works
Zhu, X., Chen, Z., Shen, W., Huang, G., Sedivy, J. M., Wang, H., & Ju, Z. (2021) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-021-00646-9 · Cited by 410 · see citing works
Universal DNA methylation age across mammalian tissues
Lu, A. T.-H., Fei, Z., Haghani, A., Robeck, T. R., Zoller, J. A., Li, C. Z., Lowe, R., Yan, Q. J., Zhang, J., Vu, H., et al. (2023) · Nature Aging · doi:10.1038/s43587-023-00462-6 · Cited by 495 · see citing works
Epigenetic Regulation in Neurodegenerative Diseases
Berson, A., Nativio, R., Berger, S. L., & Bonini, N. M. (2018) · Trends in Neurosciences · doi:10.1016/j.tins.2018.05.005 · Cited by 386 · see citing works
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Self-citationSIRT6 is responsible for more efficient DNA double-strand break repair in long-lived species
Tian, X., Firsanov, D., Zhang, Z., Cheng, Y., Luo, L., Tombline, G., Tan, R., Simon, M., Henderson, S., Steffan, J., et al. (2019) · Cell · doi:10.1016/j.cell.2019.03.043 · Cited by 353 · see citing works
Dysregulation of the epigenetic landscape of normal aging in Alzheimer’s disease
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Self-citationGuidelines for minimal information on cellular senescence experimentation in vivo
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“Advanced age is the largest risk factor for impaired mental and physical function and many non-communicable diseases including cancer, neurodegeneration, type 2 diabetes, and cardiovascular disease [1, 2].”
BackgroundAnti-Aging Implications of Astragalus Membranaceus (Huangqi): A Well-Known Chinese Tonic
Liu, P., Zhao, H., & Luo, Y. (2017) · Aging and Disease · doi:10.14336/ad.2017.0816 · Cited by 348 · see citing works
Mono-unsaturated fatty acids link H3K4me3 modifiers to C. elegans lifespan
Han, S., Schroeder, E. A., Silva-García, C. G., Hebestreit, K., Mair, W. B., & Brunet, A. (2017) · Nature · doi:10.1038/nature21686 · Cited by 314 · see citing works
The role of histone modifications: from neurodevelopment to neurodiseases
Park, J., Lee, K., Kim, K., & Yi, S.-J. (2022) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-022-01078-9 · Cited by 321 · see citing works
Aging and Alzheimer's disease: comparison and associations from molecular to system level
Xia, X., Jiang, Q., McDermott, J., & Han, J. J. (2018) · Aging Cell · doi:10.1111/acel.12802 · Cited by 301 · see citing works
Epigenetic changes during aging and their reprogramming potential
Kane, A. E., & Sinclair, D. A. (2019) · Critical Reviews in Biochemistry and Molecular Biology · doi:10.1080/10409238.2019.1570075 · Cited by 283 · see citing works
Glycation Damage: A Possible Hub for Major Pathophysiological Disorders and Aging
Fournet, M., Bonté, F., & Desmoulière, A. (2018) · Aging and Disease · doi:10.14336/ad.2017.1121 · Cited by 300 · see citing works
Epigenetic Modifications in Cardiovascular Aging and Diseases
Zhang, W., Song, M., Qu, J. T., & Liu, G. (2018) · Circulation Research · doi:10.1161/circresaha.118.312497 · Cited by 291 · see citing works
Molecular mechanisms of environmental exposures and human disease
Wu, H., Eckhardt, C. M., & Baccarelli, A. (2023) · Nature Reviews Genetics · doi:10.1038/s41576-022-00569-3 · Cited by 279 · see citing works
Regulation of Stem Cell Aging by Metabolism and Epigenetics
Ren, R., Ocampo, A., Liu, G., & Belmonte, J. C. I. (2017) · Cell Metabolism · doi:10.1016/j.cmet.2017.07.019 · Cited by 269 · see citing works
Aging Hallmarks and Progression and Age-Related Diseases: A Landscape View of Research Advancement
Tenchov, R., Sasso, J. M., Wang, X., & Zhou, Q. A. (2024) · ACS Chemical Neuroscience · doi:10.1021/acschemneuro.3c00531 · Cited by 276 · see citing works
Brain Endothelial Cells Are Exquisite Sensors of Age-Related Circulatory Cues
Chen, M. B., Yang, A. C., Yousef, H., Lee, D., Chen, W., Schaum, N., Lehallier, B., Quake, S. R., & Wyss-Coray, T. (2020) · Cell Reports · doi:10.1016/j.celrep.2020.03.012 · Cited by 233 · see citing works
“Whether this emerging hallmark of aging and its modulation have functional consequences will be the focus of future work (Pal and Tyler, 2016; Sen et al., 2016).”
Gasparoni, G., Bultmann, S., Lutsik, P., Kraus, T. F. J., Sordon, S., Vlcek, J., Dietinger, V., Steinmaurer, M., Haider, M., Mulholland, C. B., et al. (2018) · Epigenetics & Chromatin · doi:10.1186/s13072-018-0211-3 · Cited by 229 · see citing works
Sirtuins, epigenetics and longevity
Wątroba, M., Dudek, I., Skoda, M., Stangret, A., Rzodkiewicz, P., & Szukiewicz, D. (2017) · Ageing Research Reviews · doi:10.1016/j.arr.2017.08.001 · Cited by 221 · see citing works
Mechanisms of Short-Chain Fatty Acids Derived from Gut Microbiota in Alzheimer's Disease
Qian, X., Xie, R.-Y., Liu, X., Chen, S., & Tang, H. (2022) · Aging and Disease · doi:10.14336/ad.2021.1215 · Cited by 219 · see citing works
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Tan, L., Ma, W., Wu, H., Zheng, Y., Xing, D., Chen, R., Li, X., Daley, N., Deisseroth, K. A., & Xie, X. S. (2021) · Cell · doi:10.1016/j.cell.2020.12.032 · Cited by 190 · see citing works
Mitophagy, Mitochondrial Dynamics, and Homeostasis in Cardiovascular Aging
Wu, N. N., Zhang, Y., & Ren, J. T. (2019) · Oxidative Medicine and Cellular Longevity · doi:10.1155/2019/9825061 · Cited by 196 · see citing works
METTL3 counteracts premature aging via m6A-dependent stabilization of MIS12 mRNA
Wu, Z., Shi, Y. X., Lu, M., Song, M., Yu, Z., Wang, J., Wang, S., Ren, J., Yang, Y., Liu, G., et al. (2020) · Nucleic Acids Research · doi:10.1093/nar/gkaa816 · Cited by 190 · see citing works
Molecular and phenotypic biomarkers of aging
Xia, X., Chen, W., McDermott, J., & Han, J.-D. J. (2017) · F1000Research · doi:10.12688/f1000research.10692.1 · Cited by 187 · see citing works
Advances in Understanding of the Role of Lipid Metabolism in Aging
Chung, K. W. (2021) · Cells · doi:10.3390/cells10040880 · Cited by 185 · see citing works
Acetyl-CoA Metabolism and Histone Acetylation in the Regulation of Aging and Lifespan
Bradshaw, P. C. (2021) · Antioxidants · doi:10.3390/antiox10040572 · Cited by 185 · see citing works
Hepatic stellate cell senescence in liver fibrosis: Characteristics, mechanisms and perspectives
Zhang, M., Salas, S. S., Damba, T., Borghesan, M., Demaria, M., & Moshage, H. J. (2021) · Mechanisms of Ageing and Development · doi:10.1016/j.mad.2021.111572 · Cited by 180 · see citing works
Hallmarks of the aging T‐cell system
Zhang, H., Weyand, C. M., & Goronzy, J. J. (2021) · FEBS Journal · doi:10.1111/febs.15770 · Cited by 177 · see citing works
Antioxidative nanomaterials and biomedical applications
Liu, Y., & Shi, J. (2019) · Nano Today · doi:10.1016/j.nantod.2019.05.008 · Cited by 173 · see citing works
Cardiac ageing: extrinsic and intrinsic factors in cellular renewal and senescence
Gude, N. A., Broughton, K. M., Firouzi, F., & Sussman, M. A. (2018) · Nature Reviews Cardiology · doi:10.1038/s41569-018-0061-5 · Cited by 166 · see citing works
DNA methylation predicts age and provides insight into exceptional longevity of bats
Wilkinson, G. S., Adams, D. M., Haghani, A., Lu, A. T.-H., Zoller, J. A., Breeze, C. E., Arnold, B. D., Ball, H. C., Carter, G. G., Cooper, L. N., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-21900-2 · Cited by 175 · see citing works
Aging of mesenchymal stem cell: machinery, markers, and strategies of fighting
Al‐Azab, M., Safi, M., Idiiatullina, E., Al‐Shaebi, F., & Zaky, M. Y. (2022) · Cellular & Molecular Biology Letters · doi:10.1186/s11658-022-00366-0 · Cited by 172 · see citing works
BiT age: A transcriptome‐based aging clock near the theoretical limit of accuracy
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Histone Acetyltransferase p300 Induces De Novo Super-Enhancers to Drive Cellular Senescence
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Epigenetics, DNA damage, and aging
Soto-Palma, C., Niedernhofer, L. J., Faulk, C. D., & Dong, X. (2022) · Journal of Clinical Investigation · doi:10.1172/jci158446 · Cited by 153 · see citing works
WTAP-mediated m6A modification of lncRNA NORAD promotes intervertebral disc degeneration
Li, G., Ma, L., He, S., Luo, R., Wang, B., Zhang, W., Song, Y., Liao, Z., Ke, W., Xiang, Q., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-28990-6 · Cited by 155 · see citing works
Metabolic programs tailor T cell immunity in viral infection, cancer, and aging
Møller, S. H., Hsueh, P., Yu, Y.-R., Zhang, L., & Ho, P. (2022) · Cell Metabolism · doi:10.1016/j.cmet.2022.02.003 · Cited by 148 · see citing works
Heterochromatin: an epigenetic point of view in aging
Lee, J., Kim, E. W., Croteau, D. L., & Bohr, V. A. (2020) · Experimental & Molecular Medicine · doi:10.1038/s12276-020-00497-4 · Cited by 154 · see citing works
Fruit development and epigenetic modifications
Tang, D., Gallusci, P., & Lang, Z. (2020) · New Phytologist · doi:10.1111/nph.16724 · Cited by 148 · see citing works
Linking Lipid Metabolism to Chromatin Regulation in Aging
Papsdorf, K., & Brunet, A. (2018) · Trends in Cell Biology · doi:10.1016/j.tcb.2018.09.004 · Cited by 150 · see citing works
Cellular proteostasis decline in human senescence
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Epigenetic Regulation of Skin Cells in Natural Aging and Premature Aging Diseases
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Dynamic DNA methylation during aging: A "prophet" of age-related outcomes
Xiao, F.-H., Wang, H.-T., & Kong, Q.-P. (2019) · Frontiers in Genetics · doi:10.3389/fgene.2019.00107 · Cited by 140 · see citing works
Vitamin D deficiency accelerates ageing and age‐related diseases: a novel hypothesis
Berridge, M. J. (2017) · The Journal of Physiology · doi:10.1113/jp274887 · Cited by 142 · see citing works
Ashapkin, V. V., Suvorov, A., Pilsner, J. R., Krawetz, S. A., & Sergeyev, O. (2022) · Human Reproduction Update · doi:10.1093/humupd/dmac033 · Cited by 143 · see citing works
Genome-wide RNA polymerase stalling shapes the transcriptome during aging
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The interaction between ageing and Alzheimer's disease: insights from the hallmarks of ageing
Liu, Y., Tan, Y., Zhang, Z., Yi, M., Zhu, L., & Peng, W. (2024) · Translational Neurodegeneration · doi:10.1186/s40035-024-00397-x · Cited by 144 · see citing works
Epigenetic drift of H3K27me3 in aging links glycolysis to healthy longevity in Drosophila
Ma, Z., Wang, H., Cai, Y. A., Wang, H., Niu, K., Wu, X., Ma, H., Yang, Y., Tong, W., Liu, F., et al. (2018) · eLife · doi:10.7554/elife.35368 · Cited by 132 · see citing works
Universal DNA methylation age across mammalian tissuesPreprint
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Putting the brakes on the cell cycle: mechanisms of cellular growth arrest
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New Insights into the Role of Histone Changes in Aging
Yi, S.-J., & Kim, K. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21218241 · Cited by 132 · see citing works
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Self-defense of macrophages against oxidative injury: Fighting for their own survival
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In Vivo Reprogramming Ameliorates Aging Features in Dentate Gyrus Cells and Improves Memory in Mice.
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Epigenetic Mechanisms of Aging and Aging-Associated Diseases
la Torre, A., Vecchio, F. L., & Greco, A. (2023) · Cells · doi:10.3390/cells12081163 · Cited by 120 · see citing works
Consensus Paper: Cerebellum and Ageing
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The role of epigenetics in renal ageing
Shiels, P. G., McGuinness, D., Eriksson, M., Kooman, J. P., & Stenvinkel, P. (2017) · Nature Reviews Nephrology · doi:10.1038/nrneph.2017.78 · Cited by 114 · see citing works
Two conserved epigenetic regulators prevent healthy ageing
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Sample multiplexing for targeted pathway proteomics in aging mice
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Current Perspective in the Discovery of Anti-aging Agents from Natural Products
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Basic science and pathogenesis of ageing with HIV
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Epigenetic Priming in Cancer Initiation
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Large-scale chromatin reorganization reactivates placenta-specific genes that drive cellular aging
Liu, Z., Ji, Q., Ren, J., Yan, P., Wu, Z., Wang, S., Sun, L., Wang, Z., Li, J., Sun, G., et al. (2022) · Developmental Cell · doi:10.1016/j.devcel.2022.05.004 · Cited by 109 · see citing works
Sirtuin 6: linking longevity with genome and epigenome stability
Korotkov, A., Seluanov, A., & Gorbunova, V. A. (2021) · Trends in Cell Biology · doi:10.1016/j.tcb.2021.06.009 · Cited by 114 · see citing works
Temporal inhibition of autophagy reveals segmental reversal of ageing with increased cancer risk
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The Role of microRNAs in Organismal and Skin Aging
Gerasymchuk, M., Cherkasova, V., Kovalchuk, O., & Kovalchuk, I. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21155281 · Cited by 111 · see citing works
Histone Modifications in Alzheimer’s Disease
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Genomic Instability and Epigenetic Changes during Aging
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Effects of exercise on cellular and tissue aging
Carapeto, P. V., & Aguayo-Mazzucato, C. (2021) · Aging · doi:10.18632/aging.203051 · Cited by 107 · see citing works
Inflammation and its resolution and the musculoskeletal system
Gallo, J., Raška, M., Kriegová, E., & Goodman, S. B. (2017) · Journal of Orthopaedic Translation · doi:10.1016/j.jot.2017.05.007 · Cited by 107 · see citing works
Martin-Herranz, D. E., Aref‐Eshghi, E., Bonder, M. J., Stubbs, T. M., Choufani, S., Weksberg, R., Stegle, O., Sadiković, B., Reik, W., & Thornton, J. M. (2019) · Genome biology · doi:10.1186/s13059-019-1753-9 · Cited by 100 · see citing works
The Impact of Caloric Restriction on the Epigenetic Signatures of Aging
Gensous, N., Franceschi, C., Santoro, A., Milazzo, M., Garagnani, P., & Bacalini, M. G. (2019) · International Journal of Molecular Sciences · doi:10.3390/ijms20082022 · Cited by 103 · see citing works
- Authors
- Sen, P., Shah, P. P., Nativio, R., & Berger, S. L.
- Affiliations
- University of Pennsylvania (US)
- Corresponding author
- Berger, Shelley L.
- Venue
- Cell
- Publisher
- Elsevier BV
- Published
- 2016-08
- Volume
- 166
- Issue
- 4
- Pages
- 822-839
- ISSN
- 0092-8674 (ISSN-L)
- PMC
- PMC5821249
- OpenAlex
- W2517275410
- Cited by
- 956
- References
- 188
- Citations by year
- 2026: 76 · 2025: 96 · 2024: 111 · 2023: 116 · 2022: 97 · 2021: 128 · 2020: 113 · 2019: 87 · 2018: 76 · 2017: 51 · 2016: 5
- FWCI
- 7.31
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Cell (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- American Heart Association
- National Institutes of Health (4r01ns078283-05)
- National Institute on Aging (P01AG031862)
- National Institute of Neurological Disorders and Stroke (R01-NS078283)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Aging › Genetics, Aging, and Longevity in Model Organisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Keywords
- aging, longevity, epigenetic mechanisms, chromatin signatures, age-related diseases, anti-aging therapeutics, druggable targets, invertebrate models, vertebrate models, tissue aging
- MeSH terms
- Aging, Animals, Histones, Humans, Longevity, DNA Methylation, Chromatin Assembly and Disassembly, Epigenesis, Genetic
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Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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