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Indole as an intercellular signal in microbial communities
Open accessAbstract
Bacteria can utilize signal molecules to coordinate their behavior to survive in dynamic multispecies communities. Indole is widespread in the natural environment, as a variety of both Gram-positive and Gram-negative bacteria (to date, 85 species) produce large quantities of indole. Although it has been known for over 100 years that many bacteria produce indole, the real biological roles of this molecule are only now beginning to be unveiled. As an intercellular signal molecule, indole controls diverse aspects of bacterial physiology, such as spore formation, plasmid stability, drug resistance, biofilm formation, and virulence in indole-producing bacteria. In contrast, many non-indole-producing bacteria, plants and animals produce diverse oxygenases which may interfere with indole signaling. It appears indole plays an important role in bacterial physiology, ecological balance, and possibly human health. Here we discuss our current knowledge and perspectives on indole signaling.
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“Several bacterial taxa can also affect tryptophan levels by direct utilization for growth or via tryptophanase expression (28, 203, 204)”
From Signalling cognition: The gut microbiota and hypothalamic-pituitary-adrenal axis (2023) · cites this paper as [203]
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Cites
QUORUM SENSING: Cell-to-Cell Communication in Bacteria
Waters, C. M., & Bassler, B. L. (2005) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev.cellbio.21.012704.131001 · Cited by 3,989
Fuqua, W. C., Winans, S. C., & Greenberg, E. P. (1994) · Journal of Bacteriology · doi:10.1128/jb.176.2.269-275.1994 · Cited by 2,941
Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites
Wikoff, W. R., Anfora, A. T., Liu, J., Schultz, P. G., Lesley, S. A., Peters, E. C., & Siuzdak, G. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0812874106 · Cited by 2,677
Commensal Host-Bacterial Relationships in the Gut
Hooper, L. V., & Gordon, J. I. (2001) · Science · doi:10.1126/science.1058709 · Cited by 2,362
Attenuation of Pseudomonas aeruginosa virulence by quorum sensing inhibitors
Hentzer, M., Wu, H., Andersen, J. B., Riedel, K., Rasmussen, T. B., Bagge, N., Kumar, N., Schembri, M. A., Song, Z., Kristoffersen, P., et al. (2003) · The EMBO Journal · doi:10.1093/emboj/cdg366 · Cited by 1,440
Microbes in Gastrointestinal Health and Disease
Neish, A. S. (2008) · Gastroenterology · doi:10.1053/j.gastro.2008.10.080 · Cited by 1,423
Schuster, M., Lostroh, P., Ogi, T., & Greenberg, E. P. (2003) · Journal of Bacteriology · doi:10.1128/jb.185.7.2066-2079.2003 · Cited by 1,127
Hentzer, M., Riedel, K., Rasmussen, T. B., Heydorn, A., Andersen, J. B., Parsek, M. R., Rice, S. A., Eberl, L., Molin, S., Høiby, N., et al. (2002) · Microbiology · doi:10.1099/00221287-148-1-87 · Cited by 1,053
How bacteria talk to each other: regulation of gene expression by quorum sensing
Bassler, B. L. (1999) · Current Opinion in Microbiology · doi:10.1016/s1369-5274(99)00025-9 · Cited by 1,046
Cruciferous vegetables and human cancer risk: epidemiologic evidence and mechanistic basis
Higdon, J. V., Delage, B., WILLIAMS, D., & Dashwood, R. H. (2007) · Pharmacological Research · doi:10.1016/j.phrs.2007.01.009 · Cited by 1,038
Research works printed but not linked: 1
- Pittard AJ (1996) Biosynthesis of the aromatic amino acids: the tryptophan pathway. Escherichia coli and Salmonella: Cellular and Molecular Biology ( Neidhardt FC , ed), pp. 458–484. ASM Press, Washington, DC.
Cited by
Sorted by citations
Microbial tryptophan catabolites in health and disease
Roager, H. M., & Licht, T. R. (2018) · Nature Communications · doi:10.1038/s41467-018-05470-4 · Cited by 2,236
Serotonin, tryptophan metabolism and the brain-gut-microbiome axis
O’Mahony, S. M., Clarke, G., Borre, Y. E., Dinan, T. G., & Cryan, J. F. (2015) · Behavioural Brain Research · doi:10.1016/j.bbr.2014.07.027 · Cited by 2,012
Tryptophan metabolism as a common therapeutic target in cancer, neurodegeneration and beyond
Platten, M., Nollen, E. A. A., Röhrig, U. F., Fallarino, F., & Opitz, C. A. (2019) · Nature Reviews Drug Discovery · doi:10.1038/s41573-019-0016-5 · Cited by 1,586
Minireview: Gut microbiota: The neglected endocrine organ
Clarke, G., Stilling, R. M., Kennedy, P. J., Stanton, C., Cryan, J. F., & Dinan, T. G. (2014) · Molecular Endocrinology · doi:10.1210/me.2014-1108 · Cited by 1,192
Auxin and Plant-Microbe InteractionsPreprint
Spaepen, S., & Vanderleyden, J. (2010) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a001438 · Cited by 1,225
Tryptophan Metabolism: A Link Between the Gut Microbiota and Brain
Gao, K., Mu, C.-L., Farzi, A., & Zhu, W.-Y. (2020) · Advances in Nutrition · doi:10.1093/advances/nmz127 · Cited by 1,029
Diet-microbiota interactions and personalized nutrition
Kolodziejczyk, A. A., Zheng, D., & Elinav, E. (2019) · Nature Reviews Microbiology · doi:10.1038/s41579-019-0256-8 · Cited by 879
Small molecules from the human microbiota
Donia, M. S., & Fischbach, M. A. (2015) · Science · doi:10.1126/science.1254766 · Cited by 760
Role of intestinal microbiota and metabolites on gut homeostasis and human diseases
Lin, L., & Zhang, J. (2017) · BMC Immunology · doi:10.1186/s12865-016-0187-3 · Cited by 731
Kynurenine pathway metabolism and the microbiota-gut-brain axis
Kennedy, P. J., Cryan, J. F., Dinan, T. G., & Clarke, G. (2017) · Neuropharmacology · doi:10.1016/j.neuropharm.2016.07.002 · Cited by 724
Yang, W., & Cong, Y. (2021) · Cellular and Molecular Immunology · doi:10.1038/s41423-021-00661-4 · Cited by 715
Bacterial charity work leads to population-wide resistance
Lee, H. H., Molla, M. N., Cantor, C. R., & Collins, J. J. (2010) · Nature · doi:10.1038/nature09354 · Cited by 638
Indole and Tryptophan Metabolism: Endogenous and Dietary Routes to Ah Receptor Activation
Hubbard, T. D., Murray, I. A., & Perdew, G. H. (2015) · Drug Metabolism and Disposition · doi:10.1124/dmd.115.064246 · Cited by 670
Bacterial metabolite indole modulates incretin secretion from intestinal enteroendocrine L cells
Chimerel, C., Emery, E., Summers, D. K., Keyser, U., Gribble, F. M., & Reimann, F. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.10.032 · Cited by 548
Roles of indole as an interspecies and interkingdom signaling molecule
Lee, J.-H., Wood, T. K., & Lee, J. (2015) · Trends in Microbiology · doi:10.1016/j.tim.2015.08.001 · Cited by 516
Alexeev, E. E., Lanis, J. M., Kao, D. J., Campbell, E. L., Kelly, C. J., Battista, K. D., Gerich, M. E., Jenkins, B. R., Walk, S. T., Kominsky, D. J., et al. (2018) · The American Journal of Pathology · doi:10.1016/j.ajpath.2018.01.011 · Cited by 532
Antimicrobial heteroresistance: An emerging field in need of clarity
El-Halfawy, O. M., & Valvano, M. A. (2015) · Clinical Microbiology Reviews · doi:10.1128/cmr.00058-14 · Cited by 489
The Ecological Role of Volatile and Soluble Secondary Metabolites Produced by Soil Bacteria
Tyc, O., Song, C., Dickschat, J. S., Vos, M., & Garbeva, P. (2016) · Trends in Microbiology · doi:10.1016/j.tim.2016.12.002 · Cited by 508
Quorum-Sensing Systems as Targets for Antivirulence Therapy
Defoirdt, T. (2017) · Trends in Microbiology · doi:10.1016/j.tim.2017.10.005 · Cited by 483
Role of bacterial volatile compounds in bacterial biology
Audrain, B., Farag, M. A., Ryu, C., & Ghigo, J. (2015) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuu013 · Cited by 457
Signalling cognition: The gut microbiota and hypothalamic-pituitary-adrenal axis
Rusch, J. A., Layden, B. T., & Dugas, L. R. (2023) · Frontiers in Endocrinology · doi:10.3389/fendo.2023.1130689 · Cited by 415
Gut Microbiota-Derived Tryptophan Metabolites Maintain Gut and Systemic Homeostasis
Su, X., Gao, Y., & Yang, R. (2022) · Cells · doi:10.3390/cells11152296 · Cited by 424
Commensal bacteria-dependent indole production enhances epithelial barrier function in the colon
Shimada, Y., Kinoshita, M., Harada, K., Mizutani, M., Masahata, K., Kayama, H., & Takeda, K. (2013) · PLoS ONE · doi:10.1371/journal.pone.0080604 · Cited by 404
Formation, physiology, ecology, evolution and clinical importance of bacterial persisters
den Bergh, B. V., Fauvart, M., & Michiels, J. J. (2017) · FEMS Microbiology Reviews · doi:10.1093/femsre/fux001 · Cited by 400
Adaptation of the human aryl hydrocarbon receptor to sense microbiota-derived indoles
Hubbard, T. D., Murray, I. A., Bisson, W. H., Lahoti, T. S., Gowda, K., Amin, S. G., Patterson, A. D., & Perdew, G. H. (2015) · Scientific Reports · doi:10.1038/srep12689 · Cited by 377
Indole-3-acetic acid: A widespread physiological code in interactions of fungi with other organisms
Fu, S., Wei, J.-Y., Chen, H., Liu, Y.-Y., Lu, H.-Y., & Chou, J. (2015) · Plant Signaling & Behavior · doi:10.1080/15592324.2015.1048052 · Cited by 387
The impact of the microbiota-gut-brain axis on Alzheimer’s disease pathophysiology
Doifode, T., Giridharan, V. V., Generoso, J. S., Bhatti, G., Collodel, A., Schulz, P. E., Forlenza, O. V., & Barichello, T. (2021) · Pharmacological Research · doi:10.1016/j.phrs.2020.105314 · Cited by 347
Tryptophan (Trp) modulates gut homeostasis via aryl hydrocarbon receptor (AhR)
Sun, M., Ma, N., He, T., Johnston, L. J., & Ma, X. (2019) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2019.1598334 · Cited by 345
Irritable bowel syndrome: A microbiome-gut-brain axis disorder?
Kennedy, P. J. (2014) · World Journal of Gastroenterology · doi:10.3748/wjg.v20.i39.14105 · Cited by 347
Tryptophan Metabolism by Gut Microbiome and Gut-Brain-Axis: An in silico Analysis
Kaur, H., Bose, C., & Mande, S. S. (2019) · Frontiers in Neuroscience · doi:10.3389/fnins.2019.01365 · Cited by 331
Bacterial persisters: molecular mechanisms and therapeutic development
Niu, H., Gu, J., & Zhang, Y. (2024) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-024-01866-5 · Cited by 348
Koh, A., & Bäckhed, F. (2020) · Molecular Cell · doi:10.1016/j.molcel.2020.03.005 · Cited by 322
The Impact of CKD on Uremic Toxins and Gut Microbiota
Rysz, J., Franczyk, B., Ławiński, J., Olszewski, R., Ciałkowska-Rysz, A. D., & Gluba-Brzózka, A. (2021) · Toxins · doi:10.3390/toxins13040252 · Cited by 324
Modulation of a Circulating Uremic Solute via Rational Genetic Manipulation of the Gut Microbiota
Devlin, A. S., Marcobal, A. M., Dodd, D., Nayfach, S., Plummer, N. S., Meyer, T., Pollard, K. S., Sonnenburg, J. L., & Fischbach, M. A. (2016) · Cell Host & Microbe · doi:10.1016/j.chom.2016.10.021 · Cited by 300
Relationship Between Quorum Sensing and Secretion Systems
Trastoy, R., Blasco, L., Ambroa, A., González‐Pedrajo, B., Fernández-García, L., López, M. C., Bleriot, I., Bou, G., García‐Contreras, R., Wood, T. K., et al. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.01100 · Cited by 324
Small molecule control of bacterial biofilms
Worthington, R. J., Richards, J. J., & Melander, C. (2012) · Organic & Biomolecular Chemistry · doi:10.1039/c2ob25835h · Cited by 303
Gut microbial metabolites in depression: understanding the biochemical mechanisms
Caspani, G., Kennedy, S. H., Foster, J. A., & Swann, J. R. (2019) · Microbial Cell · doi:10.15698/mic2019.10.693 · Cited by 289
Dual Role of Indoles Derived From Intestinal Microbiota on Human Health
Ye, X., Li, H., Anjum, K., Zhong, X., Miao, S., Zheng, G., Liu, W., & Li, L. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.903526 · Cited by 288
Sinha, A. K., Laursen, M. F., Brinck, J. E., Rybtke, M., Hjørne, A. P., Procházková, N., Pedersen, M., Roager, H. M., & Licht, T. R. (2024) · Nature Microbiology · doi:10.1038/s41564-024-01737-3 · Cited by 313
Agents that Inhibit Bacterial Biofilm Formation
Rabin, N., Zheng, Y., Opoku‐Temeng, C., Du, Y., Bonsu, E., & Sintim, H. O. (2015) · Future Medicinal Chemistry · doi:10.4155/fmc.15.7 · Cited by 276
Jaglin, M., Rhimi, M., Philippe, C., Pons, N., Bruneau, A., Goustard, B., Daugé, V., Maguin, E., Naudon, L., & Rabot, S. (2018) · Frontiers in Neuroscience · doi:10.3389/fnins.2018.00216 · Cited by 269
Li, G., & Young, K. D. (2013) · Microbiology · doi:10.1099/mic.0.064139-0 · Cited by 266
Shiga Toxin-Producing Escherichia coli
Smith, J. L., Fratamico, P. M., & Gunther, N. W., IV (2014) · Advances in applied microbiology · doi:10.1016/b978-0-12-800262-9.00003-2 · Cited by 249
Lee, J., Regmi, S. C., Kim, J.-A., Cho, M. H., Yun, H., Lee, C., & Lee, J. (2011) · Infection and Immunity · doi:10.1128/iai.05580-11 · Cited by 246
Synthetic microbial consortia: from systematic analysis to construction and applications
Song, H., Ding, M., Jia, X., Ma, Q., & Yuan, Y. (2014) · Chemical Society Reviews · doi:10.1039/c4cs00114a · Cited by 235
Ziklo, N., Vidgen, M. E., Taing, K., Huston, W. M., & Timms, P. (2018) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2018.00001 · Cited by 237
New Insights Into Gut-Bacteria-Derived Indole and Its Derivatives in Intestinal and Liver Diseases
Li, X., Zhang, B., Hu, Y., & Zhao, Y. (2021) · Frontiers in Pharmacology · doi:10.3389/fphar.2021.769501 · Cited by 244
Hunziker, L., Bönisch, D., Groenhagen, U., Bailly, A., Schulz, S., & Weisskopf, L. (2014) · Applied and Environmental Microbiology · doi:10.1128/aem.02999-14 · Cited by 222
The function of gut microbiota in immune-related neurological disorders: a review
Sittipo, P., Choi, J., Lee, S., & Lee, Y. K. (2022) · Journal of Neuroinflammation · doi:10.1186/s12974-022-02510-1 · Cited by 221
Sepsis: mechanisms of bacterial injury to the patient
Minasyan, H. A. (2019) · Scandinavian Journal of Trauma Resuscitation and Emergency Medicine · doi:10.1186/s13049-019-0596-4 · Cited by 235
Hou, Y., Li, J., & Ying, S. (2023) · Metabolites · doi:10.3390/metabo13111166 · Cited by 244
Gryp, T., Paepe, K. D., Vanholder, R. C., Kerckhof, F., Biesen, W. V., de Wiele, T. V., Verbeke, F., Speeckaert, M. M., Joossens, M., Couttenye, M. M., et al. (2020) · Kidney International · doi:10.1016/j.kint.2020.01.028 · Cited by 219
Focus on the essentials: tryptophan metabolism and the microbiome-gut-brain axis
Gheorghe, C. E., Martin, J. A., Manriquez, F. V., Dinan, T. G., Cryan, J. F., & Clarke, G. (2019) · Current Opinion in Pharmacology · doi:10.1016/j.coph.2019.08.004 · Cited by 212
The gut microbiota metabolite indole alleviates liver inflammation in mice
Beaumont, M., Neyrinck, A. M., Olivares, M., Rodriguez, J., Nédélec, A., Roumain, M., Bindels, L. B., Cani, P. D., Evenepoel, P., Muccioli, G. G., et al. (2018) · The FASEB Journal · doi:10.1096/fj.201800544 · Cited by 214
Qin, H., Liu, J., Fang, W., Ravindar, L., & Rakesh, K. P. (2020) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2020.112245 · Cited by 205
Lactobacillus reuteri tryptophan metabolism promotes host susceptibility to CNS autoimmunity
Montgomery, T. L., Eckstrom, K. M., Lile, K. H., Caldwell, S. K., Heney, E. R., Lahue, K. G., D’Alessandro, A., Wargo, M. J., & Krementsov, D. N. (2022) · Microbiome · doi:10.1186/s40168-022-01408-7 · Cited by 208
Zhang, Y., Chen, R., Zhang, D., Qi, S., & Liu, Y. (2023) · Biomedicine & Pharmacotherapy · doi:10.1016/j.biopha.2023.114295 · Cited by 224
Weber, D., Oefner, P. J., Hiergeist, A., Koestler, J., Gessner, A., Weber, M., Hahn, J., Wolff, D., Stämmler, F., Spang, R., et al. (2015) · Blood · doi:10.1182/blood-2015-04-638858 · Cited by 195
Lee, J., Cho, M. H., & Lee, J. (2010) · Environmental Microbiology · doi:10.1111/j.1462-2920.2010.02308.x · Cited by 198
Sato, E., Mori, T., Mishima, E., Suzuki, A., Sugawara, S., Kurasawa, N., Saigusa, D., Miura, D., Morikawa, T., Saito, R., et al. (2016) · Scientific Reports · doi:10.1038/srep36618 · Cited by 195
Quorum sensing for population-level control of bacteria and potential therapeutic applications
Wu, S., Liu, J., Liu, C., Yang, A., & Qiao, J. (2019) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-019-03326-8 · Cited by 188
Liang, H., Dai, Z., Kou, J., Sun, K., Chen, J., Yang, Y., Wu, G., & Wu, Z. (2018) · International Journal of Molecular Sciences · doi:10.3390/ijms20010020 · Cited by 187
Salmonella typhimurium intercepts Escherichia coli signaling to enhance antibiotic tolerance
Vega, N. M., Allison, K. R., Samuels, A. N., Klempner, M. S., & Collins, J. J. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1308085110 · Cited by 185
Reactive Oxygen Species in the Signaling and Adaptation of Multicellular Microbial Communities
Čáp, M., Váchová, L., & Palková, Z. (2012) · Oxidative Medicine and Cellular Longevity · doi:10.1155/2012/976753 · Cited by 185
Quorum Quenching Agents: Resources for Antivirulence Therapy
Tang, K., & Zhang, X. (2014) · Marine Drugs · doi:10.3390/md12063245 · Cited by 184
Trastoy, R., Manso, T., Fernández-García, L., Blasco, L., Ambroa, A., del Molino, M. L. P., Bou, G., García‐Contreras, R., Wood, T. K., & Tomás, M. (2018) · Clinical Microbiology Reviews · doi:10.1128/cmr.00023-18 · Cited by 185
Biodegradation and Biotransformation of Indole: Advances and Perspectives
Ma, Q., Zhang, X., & Qu, Y. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02625 · Cited by 178
Glyphosate, pathways to modern diseases II: Celiac sprue and gluten intolerance
Samsel, A., & Seneff, S. (2013) · Interdisciplinary Toxicology · doi:10.2478/intox-2013-0026 · Cited by 177
Collective antibiotic tolerance: mechanisms, dynamics and intervention
Meredith, H. R., Srimani, J. K., Lee, A. J., Lopatkin, A. J., & You, L. (2015) · Nature Chemical Biology · doi:10.1038/nchembio.1754 · Cited by 166
Synthetic small molecules as anti-biofilm agents in the struggle against antibiotic resistance
Parrino, B., Schillaci, D., Carnevale, I., Giovannetti, E., Diana, P., Cirrincione, G., & Cascioferro, S. (2018) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2018.10.036 · Cited by 174
Indole prevents Escherichia coli cell division by modulating membrane potential
Chimerel, C., Field, C. M., Piñero-Fernández, S., Keyser, U. F., & Summers, D. (2012) · Biochimica et Biophysica Acta (BBA) - Biomembranes · doi:10.1016/j.bbamem.2012.02.022 · Cited by 170
Cason, C. A., Dolan, K. T., Sharma, G., Tao, M., Kulkarni, R. N., Helenowski, I., Doane, B. M., Avram, M. J., McDermott, M. M., Chang, E. B., et al. (2017) · Journal of Vascular Surgery · doi:10.1016/j.jvs.2017.09.029 · Cited by 172
Bacterial Metabolites of Human Gut Microbiota Correlating with Depression
Averina, O. V., Zorkina, Y., Yunes, R. А., Kovtun, A. S., Ushakova, V. M., Morozova, A. Y., Kostyuk, G. P., Даниленко, В. Н., & Chekhonin, V. P. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21239234 · Cited by 171
Bacterial Quorum-Sensing Systems and Their Role in Intestinal Bacteria-Host Crosstalk
Wu, L., & Luo, Y. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.611413 · Cited by 173
Airborne medicine: bacterial volatiles and their influence on plant health
Garbeva, P., & Weisskopf, L. (2019) · New Phytologist · doi:10.1111/nph.16282 · Cited by 169
Unraveling the Evolution of Auxin Signaling
Smet, I. D., Voß, U., Lau, S., Wilson, M. H., Shao, N., Timme, R., Swarup, R., Kerr, I. D., Hodgman, C. T., Bock, R., et al. (2010) · PLANT PHYSIOLOGY · doi:10.1104/pp.110.168161 · Cited by 161
Ryall, B., Eydallin, G., & Ferenci, T. (2012) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.05028-11 · Cited by 160
Gut Bacteria and Hydrogen Sulfide: The New Old Players in Circulatory System Homeostasis
Tomášová, L., Konopelski, P., & Ufnal, M. (2016) · Molecules · doi:10.3390/molecules21111558 · Cited by 161
Tennoune, N., Andriamihaja, M., & Blachier, F. (2022) · Microorganisms · doi:10.3390/microorganisms10050930 · Cited by 169
A Rapid and Specific Method for the Detection of Indole in Complex Biological Samples
Darkoh, C., Chappell, C., Gonzales, C., & Okhuysen, P. (2015) · Applied and Environmental Microbiology · doi:10.1128/aem.02787-15 · Cited by 156
Natural products as inspiration for the development of bacterial antibiofilm agents
Melander, R. J., Basak, A. K., & Melander, C. (2020) · Natural Product Reports · doi:10.1039/d0np00022a · Cited by 154
The gut microbiota contributes to the pathogenesis of anorexia nervosa in humans and mice
Fan, Y., Støving, R. K., Ibraim, S. B., Hyötyläinen, T., Thirion, F., Arora, T., Lyu, L., Stankevič, E., Hansen, T. H., Déchelotte, P., et al. (2023) · Nature Microbiology · doi:10.1038/s41564-023-01355-5 · Cited by 159
Biofilms in the Spotlight: Detection, Quantification, and Removal Methods
Rivas, F. G., Ripolles‐Avila, C., Fontecha‐Umaña, F., Ríos‐Castillo, A. G., & Jerez, J. J. R. (2018) · Comprehensive Reviews in Food Science and Food Safety · doi:10.1111/1541-4337.12378 · Cited by 149
Salminen, A. (2023) · Journal of Molecular Medicine · doi:10.1007/s00109-023-02289-5 · Cited by 161
Whitfield-Cargile, C., Cohen, N. D., Chapkin, R. S., Weeks, B. R., Davidson, L. A., Goldsby, J. S., Hunt, C. L., Steinmeyer, S. H., Menon, R., Suchodolski, J. S., et al. (2016) · Gut Microbes · doi:10.1080/19490976.2016.1156827 · Cited by 148
Liang, H., Dai, Z., Liu, N., Ji, Y. S., Chen, J., Zhang, Y., Yang, Y., Li, J., Wu, Z., & Wu, G. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.01736 · Cited by 154
Specialised metabolites regulating antibiotic biosynthesis inStreptomycesspp.
Niu, G., Chater, K. F., Tian, Y., Zhang, J., & Tan, H. (2016) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuw012 · Cited by 144
Kim, J., & Park, W. (2015) · The Journal of Microbiology · doi:10.1007/s12275-015-5273-3 · Cited by 156
Profiling of Protein Degraders in Cultures of Human Gut Microbiota
Amaretti, A., Gozzoli, C., Simone, M., Raimondi, S., Righini, L., Pérez‐Brocal, V., García-López, R., Moyá, A., & Rossi, M. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.02614 · Cited by 142
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Metadata
- Authors
- Lee, J.-H., & Lee, J.
- Affiliations
- Yeungnam University (KR)
- Corresponding author
- Lee, Jintae
- Venue
- FEMS Microbiology Reviews
- Publisher
- Oxford University Press (OUP)
- Published
- 2010-07
- Volume
- 34
- Issue
- 4
- Pages
- 426-444
- ISSN
- 0168-6445 (ISSN-L)
- 1574-6976
- OpenAlex
- W2049821596
- Cited by
- 1,059
- References
- 174
- Citations by year
- 2026: 82 · 2025: 113 · 2024: 94 · 2023: 115 · 2022: 112 · 2021: 99 · 2020: 89 · 2019: 62 · 2018: 61 · 2017: 42 · 2016: 36 · 2015: 44 · 2014: 42 · 2013: 27 · 2012: 17
- FWCI
- 1.02
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- FEMS Microbiology Reviews (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Yeungnam University
- Directorate for Education and Human Resources
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bacterial biofilms and quorum sensing
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Immunology and Microbiology › Microbiology › Escherichia coli research studies
- Keywords
- intercellular communication, bacterial quorum sensing, microbial communities, sporulation, plasmid stability, drug resistance, biofilm formation, virulence, Gram-positive bacteria, Gram-negative bacteria
- MeSH terms
- Bacteria, Indoles, Plasmids, Virulence, Signal Transduction, Gene Expression Regulation, Bacterial, Bacterial Physiological Phenomena, Biofilms, Drug Resistance, Bacterial, Quorum Sensing
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