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Data mining for traffic information

Clague, Michael J., Urbé, Sylvie·2020·Traffic
DOI 10.1111/tra.12702
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Abstract

Modern cell biology is now rich with data acquired at the whole genome and proteome level. We can add value to this data through integration and application of specialist knowledge. To illustrate, we will focus on the SNARE and RAB proteins; key regulators of intracellular fusion specificity and organelle identity. We examine published mass spectrometry data to gain an estimate of protein copy number and organelle distribution in HeLa cells for each family member. We also survey recent global CRISPR/Cas9 screens for essential genes from these families. We highlight instances of co‐essentiality with other genes across a large panel of cell lines that allows for the identification of functionally coherent clusters. Examples of such correlations include RAB10 with the SNARE protein Syntaxin4 (STX4) and RAB7/RAB21 with the WASH and the CCC ( C OMMD/ C CDC22/ C CDC93) complexes, both of which are linked to endosomal recycling pathways.

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Metadata

Authors
Clague, M. J., & Urbé, S.
Affiliations
Cellular and Molecular Physiology, Institute of Translational Medicine University of Liverpool Liverpool UK
ORCID
Venue
Traffic
Publisher
Wiley
Published
2019-12-19
Volume
21
Issue
1
Pages
162-168
ISSN
  • 1398-9219
  • 1600-0854
DOI
10.1111/tra.12702
Cited by
6
References
1
Language
en
Licence
onlinelibrary.wiley.com/termsAndConditions#vor (vor)

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