Molecular Signals of Epigenetic States
Open accessAbstract
Epigenetic signals are responsible for the establishment, maintenance, and reversal of metastable transcriptional states that are fundamental for the cell’s ability to “remember” past events, such as changes in the external environment or developmental cues. Complex epigenetic states are orchestrated by several converging and reinforcing signals, including transcription factors, noncoding RNAs, DNA methylation, and histone modifications. Although all of these pathways modulate transcription from chromatin in vivo, the mechanisms by which epigenetic information is transmitted through cell division remain unclear. Because epigenetic states are metastable and change in response to the appropriate signals, a deeper understanding of their molecular framework will allow us to tackle the dysregulation of epigenetics in disease.
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Cites
Takahashi, K., & Yamanaka, S. (2006) · Cell · doi:10.1016/j.cell.2006.07.024 · Cited by 26,673 · see citing works
Chromatin modifications and their function
Kouzarides, T. (2007) · Cell · doi:10.1016/j.cell.2007.02.005 · Cited by 10,883 · see citing works
Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1
Tahiliani, M., Koh, K. P., Shen, Y., Pastor, W. A., Bandukwala, H., Brudno, Y., Agarwal, S., Iyer, L. M., Liu, D. R., Aravind, L., et al. (2009) · Science · doi:10.1126/science.1170116 · Cited by 5,836 · see citing works
Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs
Rinn, J. L., Kertesz, M., Wang, J. K., Squazzo, S. L., Xu, X. H., Brugmann, S. A., Goodnough, L. H., Helms, J. A., Farnham, P., Segal, E., et al. (2007) · Cell · doi:10.1016/j.cell.2007.05.022 · Cited by 4,246 · see citing works
The Role of Chromatin during Transcription
Li, B., Carey, M., & Workman, J. L. (2007) · Cell · doi:10.1016/j.cell.2007.01.015 · Cited by 3,503 · see citing works
Muramatsu, M., Kinoshita, K., Fagarasan, S., Yamada, S., Shinkai, Y., & Honjo, T. (2000) · Cell · doi:10.1016/s0092-8674(00)00078-7 · Cited by 3,475 · see citing works
Epigenetic Reprogramming in Mammalian Development
Reik, W., Dean, W., & Walter, J. (2001) · Science · doi:10.1126/science.1063443 · Cited by 3,078 · see citing works
Bird, A. (2007) · Nature · doi:10.1038/nature05913 · Cited by 3,011 · see citing works
An Introduction to Systems Biology: Design Principles of Biological Circuits
Alon, U. (2006) · doi:10.1201/9781420011432 · Cited by 2,825 · see citing works
Ito, S., D’Alessio, A. C., Taranova, O., Hong, K., Sowers, L. C., & Zhang, Y. (2010) · Nature · doi:10.1038/nature09303 · Cited by 2,542 · see citing works
Genome-scale DNA methylation maps of pluripotent and differentiated cells
Meissner, A., Mikkelsen, T. S., Gu, H., Wernig, M., Hanna, J., Sivachenko, A., Zhang, X., Bernstein, B. E., Nusbaum, C., Jaffe, D. B., et al. (2008) · Nature · doi:10.1038/nature07107 · Cited by 2,536 · see citing works
Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila
Brennecke, J., Aravin, A. A., Stark, A., Dus, M., Kellis, M., Sachidanandam, R., & Hannon, G. J. (2007) · Cell · doi:10.1016/j.cell.2007.01.043 · Cited by 2,524 · see citing works
Linking DNA methylation and histone modification: patterns and paradigms
Cedar, H., & Bergman, Y. (2009) · Nature Reviews Genetics · doi:10.1038/nrg2540 · Cited by 2,267 · see citing works
EUKARYOTIC CYTOSINE METHYLTRANSFERASES
Goll, M. G., & Bestor, T. H. (2005) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.74.010904.153721 · Cited by 2,066 · see citing works
An operational definition of epigenetics: Figure 1.Preprint
Berger, S. L., Kouzarides, T., Shiekhattar, R., & Shilatifard, A. (2009) · Genes & Development · doi:10.1101/gad.1787609 · Cited by 1,889 · see citing works
Insights into social insects from the genome of the honeybee Apis mellifera
Weinstock, G. M., Gibbs, R. A., Worley, K. C., Sodergren, E. J., Milosavljević, A., Richards, S., Miller, J., Jiang, H., Zhang, L., Wei, X., et al. (2006) · Nature · doi:10.1038/nature05260 · Cited by 1,871 · see citing works
Huangfu, D., Maehr, R., Guo, W., Eijkelenboom, A., Snitow, M. E., Chen, A. E., & Melton, D. A. (2008) · Nature Biotechnology · doi:10.1038/nbt1418 · Cited by 1,601 · see citing works
DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA
Ooi, S. K. T., Qiu, C., Bernstein, E., Li, K., Jia, D., Yang, Z., Erdjument‐Bromage, H., Tempst, P., Lin, S., Allis, C. D., et al. (2007) · Nature · doi:10.1038/nature05987 · Cited by 1,558 · see citing works
Dissecting direct reprogramming through integrative genomic analysis
Mikkelsen, T. S., Hanna, J. H., Zhang, X., Ku, M., Wernig, M., Schorderet, P., Bernstein, B., Jaenisch, R., Lander, E. S., & Meissner, A. (2008) · Nature · doi:10.1038/nature07056 · Cited by 1,472 · see citing works
Asymmetric and symmetric stem-cell divisions in development and cancer
Morrison, S. J., & Kimble, J. E. (2006) · Nature · doi:10.1038/nature04956 · Cited by 1,393 · see citing works
Demethylation of the zygotic paternal genome
Mayer, W., Niveleau, A., Walter, J., Fundele, R. H., & Haaf, T. (2000) · Nature · doi:10.1038/35000656 · Cited by 1,330 · see citing works
Distinctive chromatin in human sperm packages genes for embryo development
Hammoud, S. S., Nix, D. A., Zhang, H., Purwar, J., Carrell, D. T., & Cairns, B. R. (2009) · Nature · doi:10.1038/nature08162 · Cited by 1,326 · see citing works
Mechanisms of Polycomb gene silencing: knowns and unknowns
Simon, J. A., & Kingston, R. E. (2009) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2763 · Cited by 1,320 · see citing works
MicroRNA control of signal transduction
Inui, M., Martello, G., & Piccolo, S. (2010) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2868 · Cited by 1,262 · see citing works
Lehnertz, B., Ueda, Y., Derijck, A. A. H. A., Braunschweig, U., Perez-Burgos, L., Kubicek, S., Chen, T., Li, E., Jenuwein, T., & Peters, A. H. F. M. (2003) · Current Biology · doi:10.1016/s0960-9822(03)00432-9 · Cited by 1,248 · see citing works
Role of the polycomb protein EED in the propagation of repressive histone marks
Margueron, R., Justin, N., Ohno, K., Sharpe, M. L., Son, J., Drury, W. J., Voigt, P., Martin, S. R., Taylor, W. R., Marco, V. D., et al. (2009) · Nature · doi:10.1038/nature08398 · Cited by 1,203 · see citing works
Self-citationEpigenetic reprogramming in mouse primordial germ cells
Hájková, P., Erhardt, S., Lane, N., Haaf, T., El‐Maarri, O., Reik, W., Walter, J., & Surani, M. A. (2002) · Mechanisms of Development · doi:10.1016/s0925-4773(02)00181-8 · Cited by 1,190 · see citing works
A piRNA Pathway Primed by Individual Transposons Is Linked to De Novo DNA Methylation in Mice
Aravin, A. A., Sachidanandam, R., Bourc’his, D., Schaefer, C. B., Pezić, D., Tóth, K. F., Bestor, T. H., & Hannon, G. J. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.09.003 · Cited by 1,173 · see citing works
Epigenetic Reprogramming in Plant and Animal Development
Feng, S., Jacobsen, S. E., & Reik, W. (2010) · Science · doi:10.1126/science.1190614 · Cited by 1,171 · see citing works
Epigenetic mechanisms of gene regulation
Russo, V. E. A., Martienssen, R. A., & Riggs, A. D. (1996) · Medical Entomology and Zoology · Cited by 1,088 · see citing works
Epigenetic Regulation of Cellular Memory by the Polycomb and Trithorax Group Proteins
Ringrose, L., & Paro, R. (2004) · Annual Review of Genetics · doi:10.1146/annurev.genet.38.072902.091907 · Cited by 1,077 · see citing works
Non‐coding RNAs: regulators of disease
Taft, R. J., Pang, K. C., Mercer, T. R., Dinger, M. E., & Mattick, J. S. (2009) · The Journal of Pathology · doi:10.1002/path.2638 · Cited by 1,056 · see citing works
Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen
Slotkin, R. K., Vaughn, M. W., Borges, F., Tanurdžić, M., Becker, J. D., Feijó, J. A., & Martienssen, R. A. (2009) · Cell · doi:10.1016/j.cell.2008.12.038 · Cited by 993 · see citing works
An Introduction to Systems Biology: Design Principles of Biological Circuits
Alon, U. (2019) · doi:10.1201/9780429283321 · Cited by 955 · see citing works
RNA-mediated non-mendelian inheritance of an epigenetic change in the mouse
Rassoulzadegan, M., Grandjean, V., Gounon, P., Vincent, S. D., Gillot, I., & Cuzin, F. (2006) · Nature · doi:10.1038/nature04674 · Cited by 921 · see citing works
Forcing cells to change lineages
Graf, T., & Enver, T. (2009) · Nature · doi:10.1038/nature08533 · Cited by 899 · see citing works
Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency
Popp, C., Dean, W., Feng, S., Cokus, S. J., Andrews, S., Pellegrini, M. A., Jacobsen, S. E., & Reik, W. (2010) · Nature · doi:10.1038/nature08829 · Cited by 860 · see citing works
Histone variants — ancient wrap artists of the epigenome
Talbert, P. B., & Henikoff, S. (2010) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2861 · Cited by 844 · see citing works
Small RNAs in transcriptional gene silencing and genome defence
Moazed, D. (2009) · Nature · doi:10.1038/nature07756 · Cited by 825 · see citing works
Making a commitment: cell lineage allocation and axis patterning in the early mouse embryo
Arnold, S. J., & Robertson, E. J. (2009) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2618 · Cited by 816 · see citing works
An Epigenetic Role for Maternally Inherited piRNAs in Transposon Silencing
Brennecke, J., Malone, C. D., Aravin, A. A., Sachidanandam, R., Stark, A., & Hannon, G. J. (2008) · Science · doi:10.1126/science.1165171 · Cited by 773 · see citing works
Aberrant silencing of imprinted genes on chromosome 12qF1 in mouse induced pluripotent stem cells
Stadtfeld, M., Apostolou, E., Akutsu, H., Fukuda, A., Follett, P., Natesan, S., Kono, T., Shioda, T., & Hochedlinger, K. (2010) · Nature · doi:10.1038/nature09017 · Cited by 763 · see citing works
Active DNA Demethylation Mediated by DNA Glycosylases
Zhu, J. (2009) · Annual Review of Genetics · doi:10.1146/annurev-genet-102108-134205 · Cited by 746 · see citing works
Small Silencing RNAs in Plants Are Mobile and Direct Epigenetic Modification in Recipient Cells
Molnár, A., Melnyk, C. W., Bassett, A. R., Hardcastle, T. J., Dunn, R. M., & Baulcombe, D. C. (2010) · Science · doi:10.1126/science.1187959 · Cited by 734 · see citing works
A model for transmission of the H3K27me3 epigenetic mark
Hansen, K. H., Bracken, A. P., Pasini, D., Dietrich, N., Gehani, S. S., Monrad, A., Rappsilber, J., Lerdrup, M., & Helin, K. (2008) · Nature Cell Biology · doi:10.1038/ncb1787 · Cited by 720 · see citing works
Bransteitter, R., Pham, P., Scharff, M. D., & Goodman, M. F. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0730835100 · Cited by 681 · see citing works
Reprogramming towards pluripotency requires AID-dependent DNA demethylation
Bhutani, N., Brady Jennifer, J., Damian, M., Sacco, A., Corbel, S. Y., & Blau, H. M. (2009) · Nature · doi:10.1038/nature08752 · Cited by 676 · see citing works
W. H. Fox Talbot and the history of photography
Gernsheim, H. (1977) · Endeavour · doi:10.1016/0160-9327(77)90005-9 · Cited by 565 · see citing works
The Colorful History of Active DNA Demethylation
Ooi, S. K. T., & Bestor, T. H. (2008) · Cell · doi:10.1016/j.cell.2008.06.009 · Cited by 537 · see citing works
Polycomb/Trithorax response elements and epigenetic memory of cell identity
Ringrose, L., & Paro, R. (2007) · Development · doi:10.1242/dev.02723 · Cited by 515 · see citing works
De novo DNA methylation promoted by G9a prevents reprogramming of embryonically silenced genes
Epsztejn‐Litman, S., Feldman, N., Abu-Remaileh, M., Shufaro, Y., Gerson, A., Ueda, J., Deplus, R., Fuks, F., Shinkai, Y., Cedar, H., et al. (2008) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1476 · Cited by 454 · see citing works
Genomic Comparison of the Ants Camponotus floridanus and Harpegnathos saltator
Bonasio, R., Zhang, G., Ye, C., Mutti, N. S., Fang, X., Qin, N., Donahue, G., Yang, P., Li, Q., Li, C., et al. (2010) · Science · doi:10.1126/science.1192428 · Cited by 453 · see citing works
Self-citationThe logic of chromatin architecture and remodelling at promoters
Cairns, B. R. (2009) · Nature · doi:10.1038/nature08450 · Cited by 447 · see citing works
Papp, B., & Müller, J. (2006) · Genes & Development · doi:10.1101/gad.388706 · Cited by 397 · see citing works
Nanney, D. L. (1958) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.44.7.712 · Cited by 377 · see citing works
The somatic replication of DNA methylation
Wigler, M. H. (1981) · Cell · doi:10.1016/0092-8674(81)90498-0 · Cited by 373 · see citing works
Kanhere, A., Viiri, K. M., Araújo, C. C., Rasaiyaah, J., Bouwman, R. D., Whyte, W. A., Pereira, C., Brookes, E., Walker, K., Bell, G. W., et al. (2010) · Molecular Cell · doi:10.1016/j.molcel.2010.03.019 · Cited by 370 · see citing works
Cell cycle control of centromeric repeat transcription and heterochromatin assembly
Chen, E. S., Zhang, K., Nicolas, E., Cam, H. P., Zofall, M., & Grewal, S. I. S. (2008) · Nature · doi:10.1038/nature06561 · Cited by 356 · see citing works
Stewart, M. D., Li, J., & Wong, J. (2005) · Molecular and Cellular Biology · doi:10.1128/mcb.25.7.2525-2538.2005 · Cited by 352 · see citing works
<i>Drosophila</i> PIWI associates with chromatin and interacts directly with HP1a
Brower-Toland, B., Findley, S. D., Jiang, L., Liu, L., Yin, H., Dus, M., Zhou, P., Elgin, S. C. R., & Lin, H. (2007) · Genes & Development · doi:10.1101/gad.1564307 · Cited by 350 · see citing works
Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenomePreprint
Lee, J. T. (2009) · Genes & Development · doi:10.1101/gad.1811209 · Cited by 349 · see citing works
Transcription is required for establishment of germline methylation marks at imprinted genesPreprint
Chotalia, M., Smallwood, S. A., Ruf, N., Dawson, C., Lucifero, D., Frontera, M., James, K., Dean, W., & Kelsey, G. (2009) · Genes & Development · doi:10.1101/gad.495809 · Cited by 346 · see citing works
Epigenetic factors in aging and longevity
Gravina, S., & Vijg, J. (2009) · Pflügers Archiv - European Journal of Physiology · doi:10.1007/s00424-009-0730-7 · Cited by 326 · see citing works
Brain function and chromatin plasticity
Dulac, C. G. (2010) · Nature · doi:10.1038/nature09231 · Cited by 299 · see citing works
Ezh2 Requires PHF1 To Efficiently Catalyze H3 Lysine 27 Trimethylation In Vivo
Sarma, K., Margueron, R., Ivanov, A. V., Pirrotta, V., & Reinberg, D. (2008) · Molecular and Cellular Biology · doi:10.1128/mcb.02017-07 · Cited by 286 · see citing works
Self-citationDNA methylation in ES cells requires the lysine methyltransferase G9a but not its catalytic activity
Dong, K., Maksakova, I. A., Mohn, F., Leung, D., Appanah, R., Lee, S., Yang, H. C., Lam, L. L. C., Mager, D. L., Schübeler, D., et al. (2008) · The EMBO Journal · doi:10.1038/emboj.2008.193 · Cited by 242 · see citing works
Intergenic transcription through a Polycomb group response element counteracts silencingPreprint
Schmitt, S., Prestel, M., & Paro, R. (2005) · Genes & Development · doi:10.1101/gad.326205 · Cited by 230 · see citing works
Targets of RNA-directed DNA methylation
Matzke, M. A., Kanno, T., Hüettel, B., Daxinger, L., & Matzke, A. J. M. (2007) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2007.06.007 · Cited by 228 · see citing works
Epigenetics in the Extreme: Prions and the Inheritance of Environmentally Acquired Traits
Halfmann, R., & Lindquist, S. L. (2010) · Science · doi:10.1126/science.1191081 · Cited by 218 · see citing works
Birke, M. T. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.4.958 · Cited by 216 · see citing works
Stc1: A Critical Link between RNAi and Chromatin Modification Required for Heterochromatin Integrity
Bayne, E. H., White, S. A., Kagansky, A., Bijos, D. A., Sánchez‐Pulido, L., Hoe, K., Kim, D.-U., Park, H.-O., Ponting, C. P., Rappsilber, J., et al. (2010) · Cell · doi:10.1016/j.cell.2010.01.038 · Cited by 214 · see citing works
Dnmt3/transcription factor interactions as crucial players in targeted DNA methylation
Hervouet, É., Vallette, F. M., & Cartron, P. (2009) · Epigenetics · doi:10.4161/epi.4.7.9883 · Cited by 211 · see citing works
Blobel, G. A., Kadauke, S., Wang, E., Lau, A. W., Zuber, J. A., Chou, M. M., & Vakoc, C. R. (2009) · Molecular Cell · doi:10.1016/j.molcel.2009.12.001 · Cited by 194 · see citing works
A Small-RNA Perspective on Gametogenesis, Fertilization, and Early Zygotic Development
Bourc’his, D., & Voinnet, O. (2010) · Science · doi:10.1126/science.1194776 · Cited by 188 · see citing works
Immortal Strands? Give Me a Break
Lansdorp, P. M. (2007) · Cell · doi:10.1016/j.cell.2007.06.017 · Cited by 188 · see citing works
Escudé, C., Francçois, J.-C., Sun, J., Ott, G., Sprinzl, M., Garestier, T., & Heéle`ne, J.-C. (1993) · Nucleic Acids Research · doi:10.1093/nar/21.24.5547 · Cited by 183 · see citing works
Polycomb Proteins Remain Bound to Chromatin and DNA during DNA Replication In Vitro
Francis, N. J., Follmer, N. E., Simon, M. D., Aghia, G., & Butler, J. D. (2009) · Cell · doi:10.1016/j.cell.2009.02.017 · Cited by 181 · see citing works
Planarian Regeneration: Its End Is Its Beginning
Alvarado, A. S. (2006) · Cell · doi:10.1016/j.cell.2006.01.012 · Cited by 173 · see citing works
RNA traffic control of chromatin complexes
Koziol, M. J., & Rinn, J. L. (2010) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2010.03.003 · Cited by 167 · see citing works
The Immortal Strand Hypothesis: Segregation and Reconstruction
Rando, T. A. (2007) · Cell · doi:10.1016/j.cell.2007.06.019 · Cited by 163 · see citing works
Histone H4 lysine 20 monomethylation promotes transcriptional repression by L3MBTL1
Kalakonda, N., Fischle, W., Boccuni, P., Gurvich, N., Hoya-Arias, R., Zhao, X., Miyata, Y., MacGrogan, D., Zhang, J., Sims, J. K., et al. (2008) · Oncogene · doi:10.1038/onc.2008.67 · Cited by 152 · see citing works
SWI/SNF is required for transcriptional memory at the yeast GAL gene clusterPreprint
Kundu, S., Horn, P. J., & Peterson, C. L. (2007) · Genes & Development · doi:10.1101/gad.1506607 · Cited by 152 · see citing works
A Yeast Catabolic Enzyme Controls Transcriptional Memory
Zacharioudakis, I. M., Gligoris, T. G., & Tzamarias, D. (2007) · Current Biology · doi:10.1016/j.cub.2007.10.044 · Cited by 147 · see citing works
Epigenetic memory transmission through mitosis and meiosis in plants
Saze, H. (2008) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2008.07.017 · Cited by 93 · see citing works
The central role of chromatin maintenance in aging
Pegoraro, G., & Misteli, T. (2009) · Aging · doi:10.18632/aging.100106 · Cited by 52 · see citing works
A Possible Epigenetic Mechanism for the Persistence of MemoryPreprint
SI, K., Lindquist, S., & Kandel, E. R. (2004) · Cold Spring Harbor Symposia on Quantitative Biology · doi:10.1101/sqb.2004.69.497 · Cited by 18 · see citing works
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Integrative analysis of 111 reference human epigenomes
Roadmap Epigenomics Consortium, Kundaje, A., Meuleman, W., Ernst, J., Bilenky, M., Yen, A., Heravi-Moussavi, A., Kheradpour, P., Zhang, Z., Wang, J., et al. (2015) · Nature · doi:10.1038/nature14248 · Cited by 6,368 · see citing works
Godoy, P., Hewitt, N. J., Albrecht, U., Andersen, M. E., Ansari, N., Bhattacharya, S., Bode, J. G., Bolleyn, J., Borner, C., Böttger, J., et al. (2013) · Archives of Toxicology · doi:10.1007/s00204-013-1078-5 · Cited by 1,280 · see citing works
The Cell–Cycle Arrest and Apoptotic Functions of p53 in Tumor Initiation and Progression
Chen, J. (2016) · Cold Spring Harbor Perspectives in Medicine · doi:10.1101/cshperspect.a026104 · Cited by 1,222 · see citing works
Intergenerational transmission of trauma effects: putative role of epigenetic mechanisms
Yehuda, R., & Lehrner, A. (2018) · World Psychiatry · doi:10.1002/wps.20568 · Cited by 730 · see citing works
Epigenetic reprogramming in cancer
Suvà, M. L., Riggi, N., & Bernstein, B. E. (2013) · Science · doi:10.1126/science.1230184 · Cited by 706 · see citing works
HIV-1 infection accelerates age according to the epigenetic clock
Horvath, S., & Levine, A. J. (2015) · Journal of Infectious Diseases · doi:10.1093/infdis/jiv277 · Cited by 556 · see citing works
Narendra, V., Rocha, P. P., An, D., Raviram, R., Skok, J. A., Mazzoni, E. O., & Reinberg, D. (2015) · Science · doi:10.1126/science.1262088 · Cited by 535 · see citing works
Self-citationAging, Rejuvenation, and Epigenetic Reprogramming: Resetting the Aging Clock
Rando, T. A., & Chang, H. Y. (2012) · Cell · doi:10.1016/j.cell.2012.01.003 · Cited by 520 · see citing works
Factors underlying variable DNA methylation in a human community cohort
Lam, L. L., Emberly, E., Fraser, H. B., Neumann, S. M., Chen, E., Miller, G. E., & Kobor, M. S. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1121249109 · Cited by 476 · see citing works
Spheroid Culture of Mesenchymal Stem Cells
Cesarz, Z., & Tamama, K. (2016) · Stem Cells International · doi:10.1155/2016/9176357 · Cited by 475 · see citing works
Dynamics and Memory of Heterochromatin in Living Cells
Hathaway, N. A., Bell, O., Hodges, C., Miller, E. L., Neel, D. S., & Crabtree, G. R. (2012) · Cell · doi:10.1016/j.cell.2012.03.052 · Cited by 446 · see citing works
The emerging role of epigenetic therapeutics in immuno-oncology
Topper, M. J., Vaz, M., Marrone, K. A., Brahmer, J. R., & Baylin, S. B. (2020) · Nature Reviews Clinical Oncology · doi:10.1038/s41571-019-0266-5 · Cited by 433 · see citing works
Microglia: Agents of the CNS Pro-Inflammatory Response
Rodríguez-Gómez, J. A., Kavanagh, E., Engskog-Vlachos, P., Engskog, M. K. R., Herrera, A. J., Espinosa-Oliva, A. M., Joseph, B., Hajji, N., Venero, J. L., & Burguillos, M. A. (2020) · Cells · doi:10.3390/cells9071717 · Cited by 365 · see citing works
Epigenetics of Stress-Related Psychiatric Disorders and Gene × Environment Interactions
Klengel, T., & Binder, E. B. (2015) · Neuron · doi:10.1016/j.neuron.2015.05.036 · Cited by 353 · see citing works
Population-specificity of human DNA methylation
Fraser, H. B., Lam, L. L., Neumann, S. M., & Kobor, M. S. (2012) · Genome Biology · doi:10.1186/gb-2012-13-2-r8 · Cited by 313 · see citing works
The Emerging Field of Neuroepigenetics
Sweatt, J. D. (2013) · Neuron · doi:10.1016/j.neuron.2013.10.023 · Cited by 324 · see citing works
Weng, N.-P., Araki, Y., & Subedi, K. (2012) · Nature Reviews Immunology · doi:10.1038/nri3173 · Cited by 290 · see citing works
Associating cellular epigenetic models with human phenotypes
Lappalainen, T., & Greally, J. M. (2017) · Nature Reviews Genetics · doi:10.1038/nrg.2017.32 · Cited by 282 · see citing works
Genomic views of STAT function in CD4+ T helper cell differentiation
O'Shea, J. J., Lahesmaa, R., Vahedi, G., Laurence, A., & Kanno, Y. (2011) · Nature Reviews Immunology · doi:10.1038/nri2958 · Cited by 295 · see citing works
Causal role for inheritance of H3K27me3 in maintaining the OFF state of a <i>Drosophila</i> HOX gene
Coleman, R. T., & Struhl, G. (2017) · Science · doi:10.1126/science.aai8236 · Cited by 221 · see citing works
Epigenetics of posttraumatic stress disorder: current evidence, challenges, and future directions
Zannas, A. S., Provençal, N., & Binder, E. B. (2015) · Biological Psychiatry · doi:10.1016/j.biopsych.2015.04.003 · Cited by 218 · see citing works
Epigenetics and the regulation of stress vulnerability and resilience
Zannas, A. S., & West, A. E. (2014) · Neuroscience · doi:10.1016/j.neuroscience.2013.12.003 · Cited by 211 · see citing works
DNA methylation in social insects: how epigenetics can control behavior and longevity
Yan, H., Bonasio, R., Simola, D. F., Liebig, J., Berger, S. L., & Reinberg, D. (2015) · Annual Review of Entomology · doi:10.1146/annurev-ento-010814-020803 · Cited by 183 · see citing works
Self-citationTang, W.-Y., Morey, L. M., Cheung, Y. Y., Birch, L., Prins, G. S., & Ho, S.-M. (2012) · Endocrinology · doi:10.1210/en.2011-1308 · Cited by 164 · see citing works
Interplay between Epigenetics and Genetics in Cancer
Choi, J. D., & Lee, J.-S. (2013) · Genomics & Informatics · doi:10.5808/gi.2013.11.4.164 · Cited by 131 · see citing works
Genetic approaches to understanding post-traumatic stress disorder
Almli, L. M., Fani, N., Smith, A. K., & Ressler, K. J. (2014) · The International Journal of Neuropsychopharmacology · doi:10.1017/s1461145713001090 · Cited by 124 · see citing works
TET2 Regulates the Neuroinflammatory Response in Microglia
Carrillo-Jimenez, A., Deniz, Ö., Niklison-Chirou, M. V., Ruiz, R., Bezerra-Salomão, K., Stratoulias, V., Amouroux, R., Yip, P. K., Vilalta, A., Cheray, M., et al. (2019) · Cell Reports · doi:10.1016/j.celrep.2019.09.013 · Cited by 104 · see citing works
Epigenetic inheritance: uncontested
Zhu, B., & Reinberg, D. (2011) · Cell Research · doi:10.1038/cr.2011.26 · Cited by 100 · see citing works
Self-citationAberg, K. A., McClay, J. L., Nerella, S., Xie, L. Y., Clark, S. L., Hudson, A. D., Bukszár, J., Adkins, D., Swedish Schizophrenia Consortium, Hultman, C. M., et al. (2012) · Epigenomics · doi:10.2217/epi.12.59 · Cited by 93 · see citing works
Epigenetic modification of <i>OXT</i> and human sociability
Haas, B. W., Filkowski, M. M., Cochran, R. N., Denison, L., Ishak, A., Nishitani, S., & Smith, A. K. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1602809113 · Cited by 91 · see citing works
Shim, H. S., Horner, J. W., Wu, C.-J., Li, J., Lan, Z. D., Jiang, S., Xu, X., Hsu, W.-H., Zal, T., Flores, I. I., et al. (2021) · Nature Aging · doi:10.1038/s43587-021-00146-z · Cited by 73 · see citing works
The Rpd3/Hda1 family of histone deacetylases regulates azole resistance in <i>Candida albicans</i>
Li, X., Cai, Q., Mei, H., Zhou, X., Shen, Y., Li, D., & Liu, W. (2015) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dkv070 · Cited by 64 · see citing works
Transgenerational epigenetic inheritance of traumatic experience in mammals
Švorcová, J. (2023) · Genes · doi:10.3390/genes14010120 · Cited by 47 · see citing works
Multi-omics integration strategies for animal epigenetic studies — A review
Kim, D.-Y., & Kim, J.-M. (2021) · Animal Bioscience · doi:10.5713/ab.21.0042 · Cited by 47 · see citing works
Moving pharmacoepigenetics tools for depression toward clinical use
Hack, L. M., Fries, G. R., Eyre, H. A., Bousman, C. A., Singh, A. B., Quevedo, J., John, V. P., Baune, B. T., & Dunlop, B. W. (2019) · Journal of Affective Disorders · doi:10.1016/j.jad.2019.02.009 · Cited by 33 · see citing works
- Authors
- Bonasio, R., Tu, S., & Reinberg, D.
- Affiliations
- Howard Hughes Medical Institute (US)
- Corresponding author
- Bonasio, Roberto
- Tu, Shengjiang
- Reinberg, Danny
- Venue
- Science
- Published
- 2010-10-29
- Volume
- 330
- Issue
- 6004
- Pages
- 612-616
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- PMC
- PMC3772643
- OpenAlex
- W2074174832
- Cited by
- 912
- References
- 86
- Citations by year
- 2026: 22 · 2025: 25 · 2024: 37 · 2023: 37 · 2022: 48 · 2021: 49 · 2020: 33 · 2019: 51 · 2018: 56 · 2017: 65 · 2016: 55 · 2015: 83 · 2014: 78 · 2013: 86 · 2012: 91
- FWCI
- 7.61
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- Science (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Howard Hughes Medical Institute
- National Institute of General Medical Sciences (GM037120, R01GM037120, R37GM037120, GM064844, R01GM064844)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chromatin Remodeling and Cancer
- Keywords
- epigenetic states, epigenetic memory, transcription factors, non-coding RNA, DNA methylation, histone modifications, chromatin regulation
- MeSH terms
- Animals, Cell Division, Chromatin, Histones, Humans, Protein Processing, Post-Translational, Transcription Factors, Transcription, Genetic, DNA Methylation, RNA, Untranslated, Epigenesis, Genetic
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