Rassf5 and Ndr kinases act in a novel pathway regulating neuronal polarity through Par3 phosphorylation
Open accessAbstract
The morphology and polarized growth of cells depend on pathways that control the asymmetric distribution of regulatory factors. The evolutionarily conserved Ndr kinases play important roles in cell polarity and morphogenesis in yeast and invertebrates but it is unclear if they perform a similar function in mammalian cells. Here we analyze the function of mammalian Ndr1 and 2 in the establishment of polarity in neurons. We show that they act downstream of the tumor suppressor Rassf5 and upstream of the polarity protein Par3. Rassf5 and Ndr1/2 are required during the polarization of hippocampal neurons to prevent the formation of supernumerary axons. Mechanistically, the Ndr kinases act by phosphorylating Par3 at Ser383 to inhibit the interaction with dynein. Thereby they polarize the distribution of Par3 and reinforce axon specification. Our results identify a novel Rassf5/Ndr/Par3 signaling cascade that regulates the transport of Par3 during the establishment of neuronal. Their role in neuronal polarity suggests that Ndr kinases perform a conserved function as regulators of cell polarity.
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Written from the paper’s full text.
TL;DR
This paper identifies a Rassf5–Ndr–Par3 signaling cascade that regulates neuronal polarity by phosphorylating Par3 at Ser383 and altering its dynein-dependent transport. Loss of Rassf5 or Ndr1/2 causes supernumerary axons, while phospho-mimetic Par3 rescues the polarity defect.
Key findings
- Simultaneous knockdown of Ndr1 and Ndr2 in hippocampal neurons reduced neurons with a single axon from 74±2% to 50±2% and increased supernumerary axons from 23±2% to 47±1%; RNAi-resistant Ndr1 or Ndr2 rescued the phenotype.
- Rassf5 knockdown increased multiple-axon neurons from 24±2% to 50±4%, rescued to 23±4% by RNAi-resistant Rassf5; Rassf5−/− cultures showed 41±2% multiple axons versus 13±3% in Rassf5+/− cultures.
- Ndr2 phosphorylated Par3 at Ser383; phospho-Ser383-Par3 signal in axons was reduced from 80±14 a.u. in controls to 7±2 a.u. after Ndr1/2 knockdown and from 36±4 a.u. to 9±2 a.u. after Rassf5 knockdown.
- Par3-S383,1196D rescued Ndr1/2 knockdown (multiple axons 50±3% to 28±1%) and Rassf5 knockdown (43±1% to 19±2%), whereas Par3-S383,1196A did not; Par3-S383D localized preferentially to axons (49±1% of signal) versus Par3-S383A (29±4%), and S383D abolished Dlic2 binding.
Methods
- Primary E18 hippocampal neuron cultures were transfected with shRNAs against Ndr1, Ndr2, or Rassf5 and analyzed at 3 DIV for axon number using Tau-1 and MAP2 staining; rescue experiments used RNAi-resistant and phospho-mutant constructs.
- Rassf5−/− mice and ex vivo electroporation of E14.5 cortical slices with live imaging were used to assess neuronal polarization and migration.
- Biochemistry included GST pulldowns, immunoprecipitation, in vitro kinase assays, mass spectrometry, and a phospho-Ser383-Par3 antibody.
Limitations
- The paper does not include a dedicated limitations section. It states that constitutive Rassf5 knockout may allow compensatory changes, that future work is needed to dissect Rassf5/Mst signaling in detail, and that an antibody against phospho-Ser1196-Par3 could not be obtained.
- Evident from the text: much of the mechanistic evidence relies on cultured hippocampal neurons, shRNA knockdown, and overexpression/rescue constructs, with cortical slice electroporation rather than direct in vivo demonstration of supernumerary axons in the Rassf5 knockout brain.
Model-written summary. Check it against the paper before relying on it.
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Cites
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Claims the paper makes
14 of 39 cited sources checked · 7 supported · 1 flagged · accuracy not yet measured
- Premisecitation§ DISCUSSION
Par3 acts as a microtubule-binding protein that bundles and stabilizes microtubules to promote axon extension.
“Recently, it was shown that Par3 also acts as a microtubule-binding protein that bundles and stabilizes microtubules to promote axon extension (Chen et al., 2013).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Chen et al., 2013 source
The Results section reports that mPar3 directly binds and bundles microtubules, and the Discussion says it stabilizes them in the emerging axon. The paper links this activity to axon specification and neuronal polarization, but does not establish that it promotes axon extension; the Results instead report impaired axonal outgrowth with mPar3 overexpression. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Premisecitation§ DISCUSSION
Par3's concentration-dependent oligomerization determines its ability to bind microtubules.
“Its concentration-dependent oligomerization determines its ability to bind microtubules.”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Chen et al., 2013 source
- Premisecitation§ DISCUSSION
During the establishment of polarity, kinesin-2 transports Par3 into the axon where it is released after phosphorylation by Erk2.
“During the establishment of polarity, kinesin-2 transports Par3 into the axon where it is released after phosphorylation by Erk2 (Funahashi et al., 2013).”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites Funahashi et al., 2013 source
The passage on Par3 transport says kinesin-2 (KIF3A) carries Par3 toward the tip of a developing axon. The Methods and Results passage reports that ERK2 phosphorylates Par3 in the distal axon and weakens its binding to KIF3A. The Conclusion discusses unloading as a proposed mechanism, but does not establish that Par3 is released there after phosphorylation. (LLM, conf=0.84)
Experimental — accuracy not yet measured
- Findingown data§ RESULTS
After polarization, Ndr kinases are detectable mainly in the axon, with only weak signals in minor neurites.
“After polarization, Ndr kinases were detectable mainly in the axon, and only weak signals were present in minor neurites (Fig. 1A).”
Quote in the paperNot a substantial claim - Findingown data§ DISCUSSION
Ser383 phosphorylation of Par3 depends on Ndr1/2 and Rassf5.
“Ser383 phosphorylation of Par3 depends on Ndr1/2 and Rassf5, and only the Ser383 Par3 phospho-mimic is sufficient to rescue the loss of Ndr kinases or the loss of Rassf5, whereas the non-phosphorylatable mutant did not show rescuing activity.”
Quote in the paperSubstantial claim
- Findingown data§ ABSTRACT
Phosphorylation of Par3 at Ser383 inhibits its interaction with dynein.
“Mechanistically, the Ndr kinases act by phosphorylating Par3 at Ser383 to inhibit its interaction with dynein, thereby polarizing the distribution of Par3 and reinforcing axon specification.”
- Also stated in: § INTRODUCTION · plain
“This phosphorylation blocks its interaction with dynein light intermediate chain 2 (Dlic2, also known as DYNC1LI2) and thereby facilitates the asymmetric localization of Par3.”
Quote in the paperSubstantial claim - Also stated in: § INTRODUCTION · plain
- Findingown data§ RESULTS
When Ndr1 or Ndr2 are suppressed individually, no effect on axon formation is detected.
“When Ndr1 or Ndr2 were suppressed individually, no effect on the formation of axons was detected (data not shown).”
Quote in the paperSubstantial claim - Findingown data§ RESULTS
The percentage of neurons with a single axon is reduced from 74±2% in controls to 50±2% after knockdown of both Ndr1 and Ndr2.
“The percentage of neurons with a single axon was reduced from 74±2% (mean±s.e.m.) in controls to 50±2% after knockdown of both Ndr1 and Ndr2, whereas the proportion of neurons with supernumerary axons increased from 23±2% to 47±1%.”
Quote in the paperSubstantial claim - Findingown data§ ABSTRACT
Rassf5 and Ndr1 or Ndr2 are required during the polarization of hippocampal neurons to prevent the formation of supernumerary axons.
“Rassf5 and Ndr1 or Ndr2 are required during the polarization of hippocampal neurons to prevent the formation of supernumerary axons.”
- Also stated in: § INTRODUCTION · plain
“The loss of Rassf5 or simultaneous suppression of Ndr1 and 2 disrupts neuronal polarity and induces the formation of supernumerary axons.”
Quote in the paperSubstantial claim - Also stated in: § INTRODUCTION · plain
- Findingown data§ RESULTS
The proportion of neurons with supernumerary axons increases from 23±2% to 47±1% after knockdown of both Ndr1 and Ndr2.
“The percentage of neurons with a single axon was reduced from 74±2% (mean±s.e.m.) in controls to 50±2% after knockdown of both Ndr1 and Ndr2, whereas the proportion of neurons with supernumerary axons increased from 23±2% to 47±1%.”
Quote in the paperSubstantial claim - Findingown data§ DISCUSSION
Ser383 is the major regulatory site of Par3 involved in neuronal polarization.
“By using a phospho-specific antibody, we confirmed Ser383 as the major regulatory site involved in neuronal polarization but we did not observe a role for Ser1196 phosphorylation in Par3 localization.”
Quote in the paperSubstantial claim - Findingown data§ ABSTRACT
Ndr kinases phosphorylate Par3 at Ser383.
“Mechanistically, the Ndr kinases act by phosphorylating Par3 at Ser383 to inhibit its interaction with dynein, thereby polarizing the distribution of Par3 and reinforcing axon specification.”
- Also stated in: § INTRODUCTION · plain
“Ndr1 and Ndr2 regulate the distribution of Par3 by phosphorylating it at Ser383.”
Quote in the paperSubstantial claim - Also stated in: § INTRODUCTION · plain
- Findingown data§ DISCUSSION
Ser1196 phosphorylation of Par3 has no observed role in Par3 localization.
“By using a phospho-specific antibody, we confirmed Ser383 as the major regulatory site involved in neuronal polarization but we did not observe a role for Ser1196 phosphorylation in Par3 localization.”
Quote in the paperNot a substantial claim - Findingown data§ RESULTS
Ndr1/2 immunoreactivity is present in all neurites of unpolarized neurons.
“Staining with an antibody recognizing the conserved C-terminal region of both Ndr1 and Ndr2 (Hergovich et al., 2007) revealed Ndr1/2 immunoreactivity in all neurites of unpolarized neurons (Fig. 1A).”
Quote in the paperNot a substantial claim - Findingown data§ DISCUSSION
Par3-S383A and Par3-S383D mutants exhibit different subcellular localizations when expressed in hippocampal neurons.
“The Par3-S383A and Par3-S383D mutants exhibited different subcellular localizations when expressed in hippocampal neurons.”
Quote in the paperSubstantial claim - Findingown data§ DISCUSSION
Par3-Ser383D shows a strongly reduced interaction with Dlic2 compared with that of Par3-Ser383A.
“Par3-Ser383D shows a strongly reduced interaction with Dlic2 compared with that of Par3-Ser383A, suggesting that Par3 phosphorylated at Ser383 does not undergo dynein-mediated retrograde transport.”
Quote in the paperSubstantial claim - Interpretationown data§ DISCUSSION
Par3 phosphorylation by Ndr kinases is functionally important for the normal establishment of neuronal polarity.
“This confirms the functional importance of Par3 phosphorylation by Ndr kinases for the normal establishment of neuronal polarity.”
Quote in the paperSubstantial claim - Interpretationreasoning§ DISCUSSION
The differential interaction with dynein is a possible explanation for the difference in the distribution of Par3-Ser383D and Par3-Ser383A.
“Their differential interaction with dynein is a possible explanation for the difference in the distribution of Par-Ser383D and Par-Ser383A.”
Quote in the paperNot a substantial claim - Premisecitation§ DISCUSSION
The asymmetric distribution of Par3 is crucial for the polarization of neurons.
“The asymmetric distribution of Par3 is crucial for the polarization of neurons (Nishimura et al., 2004; Shi et al., 2003).”
Quote in the paperSubstantial claim0 of 2 sources checked - Interpretationreasoning§ ABSTRACT
Phosphorylation of Par3 at Ser383 polarizes the distribution of Par3.
“Mechanistically, the Ndr kinases act by phosphorylating Par3 at Ser383 to inhibit its interaction with dynein, thereby polarizing the distribution of Par3 and reinforcing axon specification.”
- Also stated in: § INTRODUCTION · plain
“This phosphorylation blocks its interaction with dynein light intermediate chain 2 (Dlic2, also known as DYNC1LI2) and thereby facilitates the asymmetric localization of Par3.”
Quote in the paperSubstantial claim - Also stated in: § INTRODUCTION · plain
- Interpretationreasoning§ ABSTRACT
Ndr kinases perform a conserved function as regulators of cell polarity.
“Their role in neuronal polarity suggests that Ndr kinases perform a conserved function as regulators of cell polarity.”
Quote in the paperSubstantial claim - Interpretationown data§ DISCUSSION
Par3 phosphorylated at Ser383 does not undergo dynein-mediated retrograde transport.
“Par3-Ser383D shows a strongly reduced interaction with Dlic2 compared with that of Par3-Ser383A, suggesting that Par3 phosphorylated at Ser383 does not undergo dynein-mediated retrograde transport.”
Quote in the paperSubstantial claim - Interpretationreasoning§ INTRODUCTION
By polarizing the distribution of Par3, the Rassf5-Ndr pathway prevents the formation of supernumerary axons.
“By polarizing the distribution of Par3, the Rassf5–Ndr pathway prevents the formation of supernumerary axons.”
Quote in the paperSubstantial claim - Interpretationreasoning§ DISCUSSION
A reduced retrograde transport of Par3 would increase its local concentration in the axon, favoring its oligomerization and microtubule-binding and thereby promoting axon extension.
“A reduced retrograde transport of Par3 would increase its local concentration in the axon, favoring its oligomerization and microtubule-binding and thereby promoting axon extension.”
Quote in the paperSubstantial claim - Interpretationreasoning§ DISCUSSION
The suppression of retrograde Par3 transport together with kinesin-2-mediated anterograde transport establishes the enrichment of Par3 in a single neurite.
“Thus, the suppression of retrograde Par3 transport together with kinesin-2-mediated anterograde transport establishes the enrichment of Par3 in a single neurite.”
Quote in the paperSubstantial claim - Interpretationreasoning§ DISCUSSION
The interaction with kinesin and dynein subunits initially distributes Par3 uniformly to all neurites at stage 2.
“The interaction with kinesin and dynein subunits initially distributes Par3 uniformly to all neurites at stage 2.”
Quote in the paperSubstantial claim - Study design and conductnone given§ RESULTS
The shRNAs used efficiently suppress Ndr1 or Ndr2.
“To analyze the function of Ndr, hippocampal neurons were transfected at 0 days in vitro (DIV) with vectors for short-hairpin RNAs (shRNAs) that efficiently suppress Ndr1 or Ndr2 (Fig. 1B).”
Quote in the paperSubstantial claim - Interpretationreasoning§ DISCUSSION
Rassf5 and Ndr regulate the localization of Par3 to the axon by changing the balance between anterograde and retrograde transport to favor Par3 retention in the axon.
“Our results indicate that Rassf5 and Ndr regulate the localization of Par3 to the axon by changing the balance between anterograde and retrograde transport to favor Par3 retention in the axon.”
Quote in the paperSubstantial claim - Interpretationreasoning§ ABSTRACT
Phosphorylation of Par3 at Ser383 reinforces axon specification.
“Mechanistically, the Ndr kinases act by phosphorylating Par3 at Ser383 to inhibit its interaction with dynein, thereby polarizing the distribution of Par3 and reinforcing axon specification.”
Quote in the paperSubstantial claim - Interpretationown data§ ABSTRACT
The Rassf5-Ndr-Par3 signaling cascade regulates the transport of Par3 during the establishment of neuronal polarity.
“Our results identify a novel Rassf5–Ndr–Par3 signaling cascade that regulates the transport of Par3 during the establishment of neuronal polarity.”
Quote in the paperSubstantial claim - Interpretationreasoning§ DISCUSSION
It is unlikely that the Rassf5-Ndr-Par3 signaling cascade regulates neuronal polarity through an effect on centrosomes.
“Therefore, it is unlikely that the Rassf5–Ndr–Par3 signaling cascade regulates neuronal polarity through an effect on centrosomes.”
Quote in the paperSubstantial claim - Interpretationreasoning§ DISCUSSION
Rassf5 and Ndr kinases have a novel function.
“Taken together, we identify a novel function of Rassf5 and Ndr kinases, which might also play important roles in other types of polarized cells, such as epithelial cells, where Par3 performs an important function.”
Quote in the paperSubstantial claim
- Classified as probably not a substantial claim. 16
- May combine two claims. 22
Classified as probably not a substantial claim.
Premisecitation§ DISCUSSIONThe dynein-dependent transport of the Drosophila Par3 homolog Bazooka is required for the segregation of apically localized proteins during the establishment of epithelial polarity.
“The dynein-dependent transport of the Drosophila Par3 homolog Bazooka is required for the segregation of apically localized proteins during the establishment of epithelial polarity (Harris and Peifer, 2005).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Harris and Peifer, 2005 source
The Results section ‘Baz positioning also requires dynein-mediated basal-to-apical transport’ supports dynein’s role in positioning Baz during cellularization. But ‘aPKC and PAR-6 positioning is dynein independent’ reports that apical and basal proteins still segregate in dynein mutants during gastrulation, contrary to the claim that dynein-dependent Baz transport is required for their segregation. (LLM, conf=0.87)
Checked by a reasoning model — may be wrong.
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing).
Premisecitation§ INTRODUCTIONMammalian Ndr1 and Ndr2 share a conserved kinase domain with Drosophila Warts and mammalian Lats1 and Lats2.
“Mammalian Ndr1 (also known as STK38) and Ndr2 (also known as STK38L) share a conserved kinase domain with Drosophila Warts and mammalian Large tumor suppressor (Lats) 1 and 2 (Hergovich et al., 2006a; Hergovich et al., 2006b; Yu and Guan, 2013).”
Quote in the paperNot a substantial claim1 of 3 sources checked- cites Hergovich et al., 2006a
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- cites Hergovich et al., 2006b
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- cites Yu and Guan, 2013 source
The paper identifies mammalian Lats1/2 as orthologs of Drosophila Warts in its Hippo-pathway discussion and Table 1 (page unavailable). It does not state that Ndr1 or Ndr2 shares a conserved kinase domain with them; searches for Ndr1 and NDR kinase domain found no supporting passage. (LLM, conf=0.81)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Premisecitation§ INTRODUCTIONNdr kinases are conserved from yeast to human and act as components of an essential pathway.
“The nuclear Dbf2-related (Ndr) kinases act as components of one of these essential pathways and are conserved from yeast to human (Hergovich et al., 2006b; Yu and Guan, 2013).”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites Hergovich et al., 2006b
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- cites Yu and Guan, 2013 source
The passage describing the core Hippo pathway (indexed under Abstract; page unavailable) identifies Lats1/2 as components of a kinase cascade conserved between Drosophila and mammals. It does not identify them as Ndr kinases or establish conservation from yeast to humans, and it does not call the pathway essential. (LLM, conf=0.78)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Premisecitation§ INTRODUCTIONMammalian Ndr kinases have been implicated in the regulation of centrosome duplication and in dendrite arborization and spine formation during neuronal development.
“Mammalian Ndr kinases have been implicated in the regulation of centrosome duplication and in dendrite arborization and spine formation during neuronal development (Hergovich et al., 2007; Ultanir et al., 2012).”
Quote in the paperNot a substantial claim1 of 2 sources checkedClassified as probably not a substantial claim.
Premisecitation§ INTRODUCTIONA crucial step in neuronal differentiation is the transition from an unpolarized neuron with multiple short neurites to a polarized neuron with a single axon.
“A crucial step in neuronal differentiation is the transition from an unpolarized neuron with multiple short neurites to a polarized neuron with a single axon (Barnes and Polleux, 2009).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Barnes and Polleux, 2009 source
Classified as probably not a substantial claim. May combine two claims.
Premisecitation§ DISCUSSIONNdr kinases and Par3 have been implicated in the regulation of centrosome duplication and orientation, respectively.
“Ndr kinases and Par3 have been implicated in the regulation of centrosome duplication and orientation, respectively (Hergovich et al., 2007; Schmoranzer et al., 2009).”
Quote in the paperSubstantial claim1 of 2 sources checkedMay combine two claims.
Premisecitation§ DISCUSSIONPar3 interacts not only with KIF3A but also with the dynein subunit Dlic2.
“Par3 interacts not only with KIF3A but also with the dynein subunit Dlic2 (Schmoranzer et al., 2009).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Schmoranzer et al., 2009 source
The Results section, “Par3 associates with dynein” (page unavailable), reports that dynein light intermediate chain 2 (LIC2) co-immunoprecipitated with Par3, supporting the Dlic2 portion of the claim. Our copy does not establish the claimed interaction between Par3 and KIF3A; searches for KIF3A found no relevant passage. (LLM, conf=0.88)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing).
Premisecitation§ INTRODUCTIONHippocampal neurons go through five stages of differentiation.
“Hippocampal neurons go through five stages of differentiation (Banker and Cowan, 1977; Dotti et al., 1988).”
Quote in the paperNot a substantial claim1 of 2 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Premisecitation§ INTRODUCTIONDisruption of Par3 localization by interfering with the kinesin-2-dependent transport of Par3 causes polarity defects in hippocampal neurons, showing that the restricted localization of Par3 to the axon is essential for neuronal polarity.
“Disruption of Par3 localization by interfering with the kinesin-2-dependent transport of Par3 causes polarity defects in hippocampal neurons, showing that the restricted localization of Par3 to the axon is essential for neuronal polarity (Funahashi et al., 2013; Nishimura et al., 2004).”
Quote in the paperNot a substantial claim1 of 2 sources checkedMay combine two claims.
Interpretationcitation§ DISCUSSIONThe Ndr phosphorylation sites in Par3 (Ser383 and Ser1196) are novel and distinct from the sites for Aurora A, ROCK and Erk2 that regulate Par3 function in neuronal polarity.
“The Ndr phosphorylation sites in Par3 are novel and distinct from the sites for Aurora A, ROCK and Erk2 that regulate its function in neuronal polarity (Chen et al., 2006; Funahashi et al., 2013; Khazaei and Püschel, 2009; Nakayama et al., 2008).”
Quote in the paperSubstantial claim1 of 3 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing).
Premisecitation§ INTRODUCTIONOne key pathway depends on the sequential activity of phosphatidylinositol 3-kinase and the GTPases Rap1 and Cdc42 that act through the Par polarity complex.
“One key pathway depends on the sequential activity of phosphatidylinositol 3-kinase and the GTPases Rap1 and Cdc42 that act through the Par polarity complex (Garvalov et al., 2007; Schwamborn and Püschel, 2004).”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites Garvalov et al., 2007 source
The Introduction (p. 1) places Cdc42 downstream of Rap1B in neuronal polarity, supporting that part of the proposed sequence. But the paper does not establish phosphatidylinositol 3-kinase as an upstream step, and its analysis of the Par3/Par6/aPKC complex found no consistent differences between Cdc42-knockout and wild-type neurons (p. 11). It therefore does not support the full pathway attributed to it. (LLM, conf=0.87)
Experimental — accuracy not yet measured - cites Schwamborn and Püschel, 2004 source
May combine two claims.
Findingown data§ DISCUSSIONOnly the Ser383 Par3 phospho-mimic is sufficient to rescue the loss of Ndr kinases or the loss of Rassf5, whereas the non-phosphorylatable mutant did not show rescuing activity.
“Ser383 phosphorylation of Par3 depends on Ndr1/2 and Rassf5, and only the Ser383 Par3 phospho-mimic is sufficient to rescue the loss of Ndr kinases or the loss of Rassf5, whereas the non-phosphorylatable mutant did not show rescuing activity.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown data§ DISCUSSIONPar3-S383D is located preferentially in the axon, whereas the majority of Par3-S383A remains in the soma.
“Par3-S383D is located preferentially in the axon, whereas the majority of Par3-S383A remains in the soma.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown data§ RESULTSSimultaneous knockdown of both Ndr1 and Ndr2 disrupts neuronal polarity and results in the formation of multiple Tau-1-positive axons.
“However, simultaneous knockdown of both Ndr1 and Ndr2 disrupted neuronal polarity and resulted in the formation of multiple Tau-1-positive axons.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown data§ DISCUSSIONNdr kinases phosphorylate Par3 at Ser383 and Ser1196.
“We identified two phosphorylation sites in Par3 for Ndr kinases (Ser383 and Ser1196) using kinase assays and mass spectrometry.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown data§ DISCUSSIONPar3 phosphorylated at Ser383 is highly concentrated in the distal axon and largely absent from dendrites.
“Par3 phosphorylated at Ser383 is highly concentrated in the distal axon and largely absent from dendrites, which is consistent with the function of Par3 in axon specification.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Premisecitation§ INTRODUCTIONNdr1 and Ndr2 show similar substrate specificity and appear to act redundantly.
“Ndr1 and Ndr2 show similar substrate specificity and appear to act redundantly as suggested by the phenotype of knockout mice (Cornils et al., 2010; Hergovich et al., 2006a).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Cornils et al., 2010 source
- cites Hergovich et al., 2006a
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
Probably not a substantial claim: may not pass S3 (load-bearing).
Premisecitation§ INTRODUCTIONNdr kinases play important roles in cell polarity and morphogenesis in yeast.
“Ndr kinases play important roles in cell polarity and morphogenesis in yeast (Hergovich et al., 2006b), but their function in mammalian cells is less well studied.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Hergovich et al., 2006b
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
Probably not a substantial claim: may not pass S3 (load-bearing).
Premisecitation§ INTRODUCTIONDrosophila and C. elegans Ndr homologs Tricornered and SAX-1 are involved in patterning dendrites.
“The Drosophila and Caenorhabditis elegans Ndr homologs Tricornered and SAX-1 are involved in patterning dendrites (Emoto et al., 2004; Emoto et al., 2006; Gallegos and Bargmann, 2004; He et al., 2005).”
Quote in the paperNot a substantial claim0 of 3 sources checkedMay combine two claims.
Premisecitation§ DISCUSSIONA uniform distribution after overexpression of Par3 or a block of its KIF3A-dependent anterograde transport into the axon disrupts the establishment of neuronal polarity.
“A uniform distribution after overexpression of Par3 or a block of its KIF3A-dependent anterograde transport into the axon disrupts the establishment of neuronal polarity (Nishimura et al., 2004; Shi et al., 2003).”
Quote in the paperSubstantial claim0 of 2 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing).
Interpretationcitation§ DISCUSSIONDynein might perform a similar function in neurons to mediate the retrograde transport of Par3 and segregate dendritic and axonal properties.
“Thus, dynein might perform a similar function in neurons to mediate the retrograde transport of Par3 and segregate dendritic and axonal properties.”
Quote in the paperNot a substantial claimMay combine two claims.
Interpretationnone given§ INTRODUCTIONRassf5 acts upstream of the Ndr kinases and stimulates their activity.
“Rassf5 acts upstream of the Ndr kinases and stimulates their activity.”
Quote in the paperNot a substantial claimMay combine two claims.
Interpretationown data§ DISCUSSIONPhosphorylation at Ser383 by Ndr kinases prevents the interaction of Par3 with dynein and thereby blocks its retrograde transport to the soma, which allows the accumulation of Par3 in a single neurite to promote axon formation.
“Phosphorylation at Ser383 by Ndr kinases then prevents the interaction of Par3 with dynein and thereby blocks its retrograde transport to the soma, which allows the accumulation of Par3 in a single neurite to promote axon formation.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationreasoning§ DISCUSSIONAs a consequence, Par3 continues to be equally distributed to all neurites, which results in the formation of supernumerary axons.
“As a consequence, Par3 continues to be equally distributed to all neurites, which results in the formation of supernumerary axons.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationreasoning§ DISCUSSIONIn the absence of Ndr kinases, Par3 Ser383 remains unphosphorylated and the retrograde transport of Par3 persists.
“In the absence of Ndr kinases, Par3 Ser383 remains unphosphorylated and the retrograde transport of Par3 persists.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown data§ ABSTRACTNdr1 and Ndr2 act downstream of Rassf5 and upstream of Par3.
“We show that they act downstream of the tumor suppressor Rassf5 and upstream of the polarity protein Par3 (also known as PARD3).”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown data§ DISCUSSIONSer383 phosphorylation affects the localization and/or transport of Par3.
“This difference in the distribution pattern suggests that Ser383 phosphorylation affects the localization and/or transport of Par3.”
Quote in the paperSubstantial claimClassified as probably not a substantial claim. May combine two claims.
Premisecitation§ INTRODUCTIONThe function of Par3 depends on its specific subcellular localization; it is present in all neurites at stage 2 but becomes restricted to the axon at stage 3.
“The function of Par3 depends on its specific subcellular localization; it is present in all neurites at stage 2 but becomes restricted to the axon at stage 3 (Schwamborn and Püschel, 2004; Shi et al., 2003).”
Quote in the paperSubstantial claim0 of 2 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing).
Premisecitation§ INTRODUCTIONSeveral signaling cascades that direct the establishment of neuronal polarity have been identified.
“Several signaling cascades that direct the establishment of neuronal polarity have been identified (Arimura and Kaibuchi, 2007).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Arimura and Kaibuchi, 2007 source
May combine two claims.
Premisecitation§ DISCUSSIONIn stage 2 neurons, Par3 is present in all neurites but becomes restricted to the axon upon its formation at stage 3.
“In stage 2 neurons, Par3 is present in all neurites but becomes restricted to the axon upon its formation at stage 3.”
Quote in the paperSubstantial claim0 of 2 sources checkedMay combine two claims.
Interpretationreasoning§ DISCUSSIONPar3 Ser383 is not phosphorylated in the remaining minor neurites, allowing its depletion from these processes by continued retrograde transport.
“By contrast, Par3 Ser383 is not phosphorylated in the remaining minor neurites, allowing its depletion from these processes by continued retrograde transport.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S2 (checkable), S3 (load-bearing), S4 (based).
Interpretationreasoning§ DISCUSSIONRassf5 and Ndr kinases might also play important roles in other types of polarized cells, such as epithelial cells.
“Taken together, we identify a novel function of Rassf5 and Ndr kinases, which might also play important roles in other types of polarized cells, such as epithelial cells, where Par3 performs an important function.”
Quote in the paperNot a substantial claim- Rests on an assumption: Par3 performs an important function in epithelial cells.
The paper relies on this without support.
Par3 performs an important function in epithelial cells.
“where Par3 performs an important function.”
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
Each contradiction between two passages listed here was confirmed by an independent check.
Cell line differs between the Dlic2 immunoprecipitation result and methods
MinorThe Dlic2 interaction experiment is described as using HEK 239T cells, whereas the immunoprecipitation methods specify HEK 293T cells. The text does not clarify which cell line was used.
“Myc-tagged Par3, Par3-S383A and Par3-S383D were coexpressed with RFP-tagged Dlic2 in HEK 239T cells, and their interaction was analyzed by immunoprecipitation using an anti-RFP antibody.”
“For immunoprecipitation, transfected HEK 293T cells were lysed at 48 h after transfection.”
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Self-citationAblation of the kinase NDR1 predisposes mice to the development of T cell lymphoma.
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Self-citationERK2-mediated phosphorylation of Par3 regulates neuronal polarization.
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Wilson, C., & González-Billault, C. (2015) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2015.00381 · Cited by 238 · see citing works
“NDR1 and NDR2 contribute to targeting the Par3/Par6/aPKC complex to growing axons, a mechanism that promotes neuronal polarity (Yang et al., 2014).”
BackgroundThe Roles of NDR Protein Kinases in Hippo Signalling
Hergovich, A. (2016) · Genes · doi:10.3390/genes7050021 · Cited by 105 · see citing works
Self-citationDogliotti, G., Kullmann, L., Dhumale, P., Thiele, C., Panichkina, O., Mendl, G., Houben, R., Haferkamp, S., Püschel, A. W., & Krahn, M. P. (2017) · Nature Communications · doi:10.1038/ncomms15747 · Cited by 47 · see citing works
“Hippocampal neurons were isolated from the brains of E18 rat embryos and cultured as described previously 69 .”
Self-citationChung, S., Awal, M. R., Shay, J., McLoed, M., Mazur, E., & Gabel, C. V. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1600564113 · Cited by 44 · see citing works
“In mammals, NDR kinases suppress formation of supernumerary axons during polarization of developing hippocampal neurons in vitro and are activated by calcium (47, 48), suggesting a possible regulatory link with neuronal activity and the underlying calcium signal (9).”
BackgroundPAR3–PAR6–atypical PKC polarity complex proteins in neuronal polarization
Hapak, S. M., Rothlin, C. V., & Ghosh, S. (2018) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-018-2828-6 · Cited by 43 · see citing works
Neuronal polarization in the developing cerebral cortex
Sakakibara, A., & Hatanaka, Y. (2015) · Frontiers in Neuroscience · doi:10.3389/fnins.2015.00116 · Cited by 41 · see citing works
“…plays a central role in axon specification: for example, aPKC inhibition suppresses axon formation in hippocampal neurons (Zhang et al., 2007). aPKC/Par complex function is differentially regulated by Par3 phosphorylation via multiple kinase pathways (Funahashi et al., 2013; Yang et al., 2014).”
BackgroundThe guanine nucleotide exchange factor Arhgef7/βPix promotes axon formation upstream of TC10
Tobon, A., Suresh, M., Jin, J., Vitriolo, A., Pietralla, T., Tedford, K., Bossenz, M., Mahnken, K., Kiefer, F., Testa, G., et al. (2018) · Scientific Reports · doi:10.1038/s41598-018-27081-1 · Cited by 36 · see citing works
Self-citationZhang, L., & Wei, X. (2022) · Journal of Neuroscience · doi:10.1523/jneurosci.0059-22.2022 · Cited by 34 · see citing works
Nuñez, I., Pino, M. R., Wiley, D. J., Das, M. E., Chen, C., Goshima, T., Kume, K., Hirata, D., Toda, T., & Verde, F. (2016) · eLife · doi:10.7554/elife.14216 · Cited by 26 · see citing works
“Recent work has shown that mammalian NDR1 and NDR2 promote polarity in neurons upstream of the polarity protein Par3 (Yang et al., 2014).”
BackgroundPTEN–GSK3β–MOB1 axis controls neurite outgrowth in vitro and in vivo
Song, Z., Han, X., Zou, H., Zhang, B., Ding, Y., Xu, X., Zeng, J., Liu, J., & Gong, A. (2018) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-018-2890-0 · Cited by 23 · see citing works
Transcriptomic analysis and novel insights into lens fibre cell differentiation regulated by Gata3
Martynova, E. U., Zhao, Y., Xie, Q. M., et al. (2019) · Open Biology · doi:10.1098/rsob.190220 · Cited by 21 · see citing works
The Sema3A receptor Plexin-A1 suppresses supernumerary axons through Rap1 GTPases
Wang, N., Dhumale, P., Chiang, J., & Püschel, A. W. (2018) · Scientific Reports · doi:10.1038/s41598-018-34092-5 · Cited by 19 · see citing works
Self-citationDhumale, P., Menon, S. A., Chiang, J., & Püschel, A. W. (2018) · PLoS ONE · doi:10.1371/journal.pone.0196698 · Cited by 15 · see citing works
“Neuronal morphology and axon formation were analyzed as described before using a Zeiss Axiophot microscope equipped with a Visitron CCD camera and the SPOT Advanced Imaging software or a Zeiss LSM 700 using the ZEN (black edition) software [40, 41].”
MethodSelf-citationNdr2 Kinase Controls Neurite Outgrowth and Dendritic Branching Through α1 Integrin Expression
Demiray, Y. E., Rehberg, K., Kliche, S., & Stork, O. (2018) · Frontiers in Molecular Neuroscience · doi:10.3389/fnmol.2018.00066 · Cited by 12 · see citing works
“Further research confirmed that Ndr2 is indeed critical for neuronal polarization (Yang et al., 2014) and dendritic differentiation in mammalian neurons.”
BackgroundThe Role of Rab GTPases in the development of genetic and malignant diseases
Erol, Ö. D., Şenocak, Ş., & Aerts‐Kaya, F. (2023) · Molecular and Cellular Biochemistry · doi:10.1007/s11010-023-04727-x · Cited by 11 · see citing works
ALS-linked C9orf72–SMCR8 complex is a negative regulator of primary ciliogenesis
Tang, D., Zheng, K., Zhu, J., Jin, X., Bao, H., Jiang, L., Li, H., Wang, Y.-C., Lu, Y., Liu, J., et al. (2023) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2220496120 · Cited by 9 · see citing works
“Primary cells were performed as described previously (70, 71).”
MethodSelf-citationZhang, C., He, Z., Tan, Z., & Tian, F. (2023) · PLoS ONE · doi:10.1371/journal.pone.0284359 · Cited by 4 · see citing works
“NDR2 is a protein kinase important for neuronal polarity and morphogenesis [39], and controls integrin-dependent neurite growth in mouse hippocampal neurons [40].”
BackgroundControl of stress-activated Cdc42 dynamics by the MAP kinase Sty1—NDR kinase Orb6 regulatory axis
Doyle, L. P., Chen, J., Gould, K. L., McCollum, D., & Verde, F. (2025) · iScience · doi:10.1016/j.isci.2025.113298 · Cited by 4 · see citing works
“31,32 38 In S. pombe , the conserved NDR kinase is known as Orb6 and it plays a role in controlling cell polarized growth and cell morphogenesis, 16,17,32,39–44 and it regulates the localization and activity of the key morphological regulator Cdc42 GTPase.”
Fresquez, T., Tam, B. M., Eshelman, S. C., Moritz, O. L., Robichaux, M. A., & Deretic, D. (2025) · Journal of Cell Science · doi:10.1242/jcs.263401 · Cited by 2 · see citing works
del Ángel, M., Tsutiya, A., Hayani, H., Madencioglu, D., Kul, E., Caliskan, G., Demiray, Y. E., Dityatev, A., & Stork, O. (2025) · Journal of Neurochemistry · doi:10.1111/jnc.70094 · Cited by 1 · see citing works
“In mammals, the two NDR isoforms NDR1 ( Stk38 ) and NDR2 ( Stk38l ) have been implicated in neuronal development, including control of neuronal polarity and axon guidance and proliferation of neuronal progenitors (Ultanir et al. 2012; Rehberg et al. 2014; Yang et al. 2014).”
NDR2 kinase: A review of its physiological role and involvement in carcinogenesis
Biojout, T., Bergot, E., Bernay, B., Levallet, G., & Levallet, J. (2025) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2025.143656 · Cited by 1 · see citing works
Doyle, L. P., Tams, R. N., Chen, C., Nuñez, I., Haller, P. R., & Verde, F. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.02.26.432566 · Cited by 1 · see citing works
Banerjee, S. L., Lavoie, N., Jacquet, K., Lessard, F., Osornio-Hernandez, A. I., Lavoie, J. N., Elowe, S., Lambert, J., Laprise, P., & Bisson, N. (2020) · SSRN Electronic Journal · doi:10.2139/ssrn.3720004
“Notably, serine/threonine kinases PKCι (Nagai-Tamai et al. 2002), Par1 (MARK2) (Benton and St Johnston 2003), Aurora A/B (Khazaei and Püschel 2009), ERK2 (Funahashi et al. 2013, Yang et al. 2012), ROCK (Nakayama et al. 2008) and NDR1/2 (Yang et al. 2014) were all described to regulate PAR-3 protein interactions and fu…”
BackgroundGu, J., Marjanović, J., Tomic‐Canic, M., Zhang, F., & Verde, F. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.10.30.685405
Doyle, L. P., Tams, R. N., Chen, C., Nuñez, I., Haller, P. R., & Verde, F. (2026) · Journal of Cell Science · doi:10.1242/jcs.264507 · Cited by 1 · see citing works
“NDR kinases also play a role in neuronal differentiation (Emoto et al., 2004; Yang et al., 2014; Zallen et al., 2000; Demiray et al., 2018).”
- Authors
- Yang, R., Kong, E., Jin, J., Hergovich, A., & Püschel, A. W.
- Affiliations
- University of Münster (DE)
- University College London (GB)
- Corresponding author
- Püschel, Andreas W.
- Venue
- Journal of Cell Science
- Publisher
- The Company of Biologists
- Published
- 2014-01-01
- Volume
- 127
- Issue
- Pt 16
- Pages
- 3463-76
- ISSN
- 0021-9533 (ISSN-L)
- 1477-9137
- PMC
- PMC4132390
- OpenAlex
- W2071198165
- Semantic Scholar
- 39fae687561a4c805e7e271e39ade3625ad8b75a
- Cited by
- 25
- References
- 66
- Citations by year
- 2026: 1 · 2025: 5 · 2023: 3 · 2022: 1 · 2021: 1 · 2020: 1 · 2019: 1 · 2018: 6 · 2017: 1 · 2016: 3 · 2015: 2
- FWCI
- 0.81
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Journal of Cell Science (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (submittedVersion)
- PubMed Central (submittedVersion)
- HighWire Press Open Archive (submittedVersion)
- Funders
- Wellcome Trust (090090/Z/09/Z)
- Topics
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Axon Guidance and Neuronal Signaling
- Life Sciences › Neuroscience › Developmental Neuroscience › Neurogenesis and neuroplasticity mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
- Keywords
- RASSF5, NDR kinase, NDR1, NDR2, STK38, Par3, PARD3, neuronal polarity, axon specification, hippocampal neurons, dynein, protein phosphorylation
- MeSH terms
- Animals, Neurons, Phosphorylation, Protein Binding, Signal Transduction, Cell Adhesion Molecules, Cell Polarity, Protein Serine-Threonine Kinases, Mice, Knockout, Cell Cycle Proteins, Adaptor Proteins, Signal Transducing, Apoptosis Regulatory Proteins, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-18.
Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-18.
Cited sources are checked by gpt-6-sol.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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