Graph theoretical analysis of functional brain networks: test-retest evaluation on short- and long-term resting-state functional MRI data
Open accessAbstract
Graph-based computational network analysis has proven a powerful tool to quantitatively characterize functional architectures of the brain. However, the test-retest (TRT) reliability of graph metrics of functional networks has not been systematically examined. Here, we investigated TRT reliability of topological metrics of functional brain networks derived from resting-state functional magnetic resonance imaging data. Specifically, we evaluated both short-term (<1 hour apart) and long-term (>5 months apart) TRT reliability for 12 global and 6 local nodal network metrics. We found that reliability of global network metrics was overall low, threshold-sensitive and dependent on several factors of scanning time interval (TI, long-term>short-term), network membership (NM, networks excluding negative correlations>networks including negative correlations) and network type (NT, binarized networks>weighted networks). The dependence was modulated by another factor of node definition (ND) strategy. The local nodal reliability exhibited large variability across nodal metrics and a spatially heterogeneous distribution. Nodal degree was the most reliable metric and varied the least across the factors above. Hub regions in association and limbic/paralimbic cortices showed moderate TRT reliability. Importantly, nodal reliability was robust to above-mentioned four factors. Simulation analysis revealed that global network metrics were extremely sensitive (but varying degrees) to noise in functional connectivity and weighted networks generated numerically more reliable results in compared with binarized networks. For nodal network metrics, they showed high resistance to noise in functional connectivity and no NT related differences were found in the resistance. These findings provide important implications on how to choose reliable analytical schemes and network metrics of interest.
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Multiple studies have found evidence for limited test-retest reliability using a multitude of conventional rs-fcMRI network characteristics and analytic approaches.
“Multiple studies have found evidence for limited test-retest reliability using a multitude of conventional rs-fcMRI network characteristics and analytic approaches (Braun et al., 2012; Wang et al., 2011; Wisner et al., 2013; Zuo et al., 2010; Zuo and Xing, 2014).”
From Development of large-scale functional networks from birth to adulthood: A guide to the neuroimaging literature (2017) · cites this paper as Wang et al., 2011
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Self-citation
- Authors
- Wang, J.-H., Zuo, X.-N., Gohel, S., Milham, M. P., Biswal, B. B., & He, Y.
- Affiliations
- Chinese Academy of Sciences (CN)
- University of Medicine and Dentistry of New Jersey (US)
- NYU Langone Health (US)
- Venue
- PLoS ONE
- Publisher
- Public Library of Science (PLoS)
- Published
- 2011-07-19
- Volume
- 6
- Issue
- 7
- Pages
- e21976
- ISSN
- 1932-6203 (ISSN-L)
- PMC
- PMC3139595
- OpenAlex
- W2020617938
- Cited by
- 416
- References
- 74
- Citations by year
- 2026: 21 · 2025: 24 · 2024: 29 · 2023: 35 · 2022: 30 · 2021: 33 · 2020: 27 · 2019: 19 · 2018: 27 · 2017: 36 · 2016: 19 · 2015: 40 · 2014: 27 · 2013: 25 · 2012: 19
- FWCI
- 12.50
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- PLoS ONE (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Institutional Repository of Institute of Psychology, Chinese Academy of Sciences (Institute of Psychology, Chinese Academy of Sciences) (submittedVersion, cc-by)
- RePEc: Research Papers in Economics (submittedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Figshare (submittedVersion, cc-by)
- Institutional Repository of Institute of Psychology, Chinese Academy of Sciences (Institute of Psychology, Chinese Academy of Sciences) (submittedVersion, cc-by-nc-sa)
- Funders
- National Natural Science Foundation of China (30870667, 81030028)
- Topics
- Life Sciences › Neuroscience › Cognitive Neuroscience › Functional Brain Connectivity Studies
- Physical Sciences › Physics and Astronomy › Statistical and Nonlinear Physics › Complex Network Analysis Techniques
- Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Advanced Neuroimaging Techniques and Applications
- Keywords
- test-retest reliability, functional brain networks, resting-state functional connectivity, graph theory, hub regions, association cortex, noise sensitivity, network topology
- MeSH terms
- Adult, Brain, Computer Simulation, Female, Humans, Magnetic Resonance Imaging, Male, Models, Neurological, Nerve Net, Rest, Statistics as Topic, Time Factors, Reproducibility of Results
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