Molecular and Structural Basis of DNA Sensors in Antiviral Innate Immunity
Open accessAbstract
DNA viruses are a source of great morbidity and mortality throughout the world by causing many diseases; thus, we need substantial knowledge regarding viral pathogenesis and the host’s antiviral immune responses to devise better preventive and therapeutic strategies. The innate immune system utilizes numerous germ-line encoded receptors called pattern-recognition receptors (PRRs) to detect various pathogen-associated molecular patterns (PAMPs) such as viral nucleic acids, ultimately resulting in antiviral immune responses in the form of proinflammatory cytokines and type I interferons. The immune-stimulatory role of DNA is known for a long time; however, DNA sensing ability of the innate immune system was unraveled only recently. At present, multiple DNA sensors have been proposed, and most of them use STING as a key adaptor protein to exert antiviral immune responses. In this review, we aim to provide molecular and structural underpinnings on endosomal DNA sensor Toll-like receptor 9 (TLR9) and multiple cytosolic DNA sensors including cyclic GMP-AMP synthase (cGAS), interferon-gamma inducible 16 (IFI16), absent in melanoma 2 (AIM2), and DNA-dependent activator of IRFs (DAI) to provide new insights on their signaling mechanisms and physiological relevance. We have also addressed less well-understood DNA sensors such as DEAD-box helicase DDX41, RNA polymerase III (RNA pol III), DNA-dependent protein kinase (DNA-PK), and meiotic recombination 11 homolog A (MRE11). By comprehensive understanding of molecular and structural aspects of DNA-sensing antiviral innate immune signaling pathways, potential new targets for viral and autoimmune diseases can be identified.
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Multiple DNA sensors have been described, including cGAS, AIM2, IFI16, and TLR9.
“Multiple sensors have been described, depending on their subcellular localization, their specificity towards nucleic acids, as well as their associated adaptor protein, including cGAS, AIM2, IFI16, and TLR9 [78] (Figure 3).”
From Risk mitigation of immunogenicity: a key to personalized retinal gene therapy (2021) · cites this paper as [78]
IFI16 is predominantly nuclear with smaller quantities in cytoplasm, recognizes dsDNA, is linked with STING adaptor, and is involved in inflammasome formation.
“Interferon (IFN)-γ inducible protein 16 (IFI16) is another DNA sensor from the same family as AIM2, which can be found predominantly in the nucleus, with smaller quantities in the cytoplasm.Also capable of recognizing dsDNA, IFI16 is linked with STING adaptor and is involved in inflammasome formation [78,81].”
From Risk mitigation of immunogenicity: a key to personalized retinal gene therapy (2021) · cites this paper as [78]
TLR9 is the only DNA sensor expressed in the endosome and the only one experimentally proven to trigger rAAV-associated immunity.
“Finally, toll-like receptor (TLR)-9, member of the wellstudied TLR sub-family of PRRs, is the only DNA sensor expressed in the endosome and the only one, to date, experimentally proven to trigger rAAV-associated immunity.”
From Risk mitigation of immunogenicity: a key to personalized retinal gene therapy (2021) · cites this paper as [78]
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Ginkgetin Alleviates Inflammation and Senescence by Targeting STING
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Poly(I:C), a double stranded RNA analog, activates the anti-viral DNA sensors in buffalo fibroblasts
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Messenger RNA and Plasmid DNA Vaccines for the Treatment of Cancer
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African swine fever virus L11L interferes with antiviral responses by targeting the IRF3 and PKR
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Structural insights into the atypical filament assembly of pyrin domain-containing IFI16
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Toll-Like Receptors and Emerging Viral Infections
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Unleashing the potential of a low CpG Passer transposon for superior CAR-T cell therapy
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SIRT4 regulates antiviral and autoimmune responses by promoting cGAS-mediated signaling pathways
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Kudome, N., Ito, A., Ota, A., Kobayashi, M., Ikeda, M., & Hamajima, R. (2023) · Developmental & Comparative Immunology · doi:10.1016/j.dci.2023.104897 · Cited by 2 · see citing works
Polymer Nanocomposites of 2D Nanomaterials for Biosensing and Imaging Applications
Poornima, A. P., Ankur, T. D., Priyanga, P., Preethi, R. A., Nihala, S., Kamalesh, M., Elamathi, S., Al-Dhabi, N. A., Mariadhas, V. A., & Anand, A. V. (2025) · Wiley eBooks · doi:10.1002/9781394200375.ch19 · Cited by 2 · see citing works
Gene Electrotransfer and DNA Sensing
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Research on cGAS STING Signaling Pathway
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The DAMP-Driven Host Immune Defense Program Against Pathogens
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Type I IFN expression is inhibited during cell division by CDK4/6Preprint
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Varicellovirus bovinealpha 1 UL42 targets host IRF3 to inhibit type I interferon β production
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MRE11A Regulates Sepsis Through the mtDNA/STING Pathway of T Lymphocyte ApoptosisPreprint
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Epigenetic regulation of transgenes
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Enterovirus infections in children
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ZBP1 and IFI16: novel innate sensors and inflammation regulation under infection stress
Lu, C., Xu, B., & Xiong, Y. (2026) · Frontiers in Immunology · doi:10.3389/fimmu.2026.1869593
Stealthy lentiviral vectors: Breaking the barriers to systemic in vivo gene delivery
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- Authors
- Zahid, A., Ismail, H., Li, B., & Jin, T.
- Affiliations
- University of Science and Technology of China (CN)
- Corresponding author
- Li, Bofeng
- Jin, Tengchuan
- Venue
- Frontiers in Immunology
- Publisher
- Frontiers Media SA
- Published
- 2020-11-30
- Volume
- 11
- Pages
- 613039-613039
- ISSN
- 1664-3224 (ISSN-L)
- PMC
- PMC7734173
- OpenAlex
- W3108522903
- Cited by
- 100
- References
- 171
- Citations by year
- 2026: 10 · 2025: 24 · 2024: 15 · 2023: 25 · 2022: 15 · 2021: 11
- FWCI
- 1.24
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Frontiers in Immunology (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- National Natural Science Foundation of China (31971129, U1732109, 31870731)
- Chinese Academy of Sciences (XDB29030104, 31971129, 31870731)
- Chinese Government Scholarship
- Fundamental Research Funds for the Central Universities
- Topics
- Life Sciences › Immunology and Microbiology › Immunology › interferon and immune responses
- Life Sciences › Immunology and Microbiology › Immunology › Immune Response and Inflammation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA and Nucleic Acid Chemistry
- Keywords
- DNA sensing, antiviral innate immunity, pattern recognition receptors, TLR9, STING, cGAS, IFI16, AIM2, DAI, DDX41, RNA polymerase III, DNA-dependent protein kinase, MRE11, type I interferon, inflammatory cytokines, DNA viruses, viral pathogenesis, autoimmune disease
- MeSH terms
- Animals, Antiviral Agents, DNA Viruses, DNA, Viral, Humans, Immunity, Innate, Signal Transduction, Toll-Like Receptor 9
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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