PAUP (phylogenetic analysis using parsimony)

Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus

Korber, B., Fischer, W. M., Gnanakaran, S., Yoon, H., Theiler, J., Abfalterer, W., Hengartner, N., Giorgi, E. E., Bhattacharya, T., Foley, B., et al. (2020) · Cell · doi:10.1016/j.cell.2020.06.043 · Cited by 4,281

A Molecular Timeline for the Origin of Photosynthetic Eukaryotes

Yoon, H. S., Hackett, J. D., Ciniglia, C., Pinto, G., & Bhattacharya, D. (2004) · Molecular Biology and Evolution · doi:10.1093/molbev/msh075 · Cited by 945

Two period Homologs: Circadian Expression and Photic Regulation in the Suprachiasmatic Nuclei

Shearman, L. P., Zylka, M. J., Weaver, D. R., Kolakowski, L. F., & Reppert, S. M. (1997) · Neuron · doi:10.1016/s0896-6273(00)80417-1 · Cited by 781

Ecological and immunological determinants of influenza evolution.

Ferguson, N. M., Galvani, A. P., & Bush, R. M. (2003) · Nature · doi:10.1038/nature01509 · Cited by 746

Origin and evolution of the 1918 “Spanish” influenza virus hemagglutinin gene

Reid, A. H., Fanning, T. G., Hultin, J. V., & Taubenberger, J. K. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.4.1651 · Cited by 607

Sulfate-reducing bacterium grows with Cr(VI), U(VI), Mn(IV), and Fe(III) as electron acceptors

Tebo, B. M., & Obraztsova, A. Y. (1998) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.1998.tb12998.x · Cited by 477

PHYLOGENETIC ANALYSIS IN MOLECULAR EVOLUTIONARY GENETICS

Nei, M. (1996) · Annual Review of Genetics · doi:10.1146/annurev.genet.30.1.371 · Cited by 349

Molecular Evidence for Cryptic Species of Aurelia aurita(Cnidaria, Scyphozoa)

Dawson, M. N., & Jacobs, D. K. (2001) · The Biological Bulletin · doi:10.2307/1543089 · Cited by 329

The Ediacaran Biotas in Space and Time

Waggoner, B. (2003) · Integrative and Comparative Biology · doi:10.1093/icb/43.1.104 · Cited by 283

vanishing tassel2 Encodes a Grass-Specific Tryptophan Aminotransferase Required for Vegetative and Reproductive Development in Maize

Phillips, K. A., Skirpan, A. L., Liu, X., Christensen, A., Slewinski, T. L., Hudson, C., Barazesh, S., Cohen, J. D., Malcomber, S., & McSteen, P. (2011) · The Plant Cell · doi:10.1105/tpc.110.075267 · Cited by 286

Morphological and Molecular Evidence for a Stepwise Evolutionary Transition from Teeth to Baleen in Mysticete Whales

Deméré, T. A., McGowen, M. R., Berta, A., & Gatesy, J. (2008) · Systematic Biology · doi:10.1080/10635150701884632 · Cited by 283

Calreticulin and calnexin in the endoplasmic reticulum are important for phagocytosis

Müller‐Taubenberger, A., Lupas, A. N., Li, H., Ecke, M., Simmeth, E., & Gerisch, G. (2001) · The EMBO Journal · doi:10.1093/emboj/20.23.6772 · Cited by 242

Genomic evolution during a 10,000-generation experiment with bacteria

Papadopoulos, D., Schneider, D., Meier-Eiss, J., Arber, W., Lenski, R. E., & Blot, M. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.7.3807 · Cited by 234

Hierarchical patterns of global human Y-chromosome diversity.

Hammer, M. F., Karafet, T. M., Redd, A. J., Jarjanazi, H., Santachiara-Benerecetti, S., Soodyall, H., & Zegura, S. L. (2001) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a003906 · Cited by 192

Human gut bacterial communities are altered by addition of cruciferous vegetables to a controlled fruit- and vegetable-free diet

Fei, L., Meredith A. J., H., Yvonne, S., & Johanna W., L. (2009) · The Journal of Nutrition · doi:10.3945/jn.109.108191 · Cited by 181

Metschnikowia fructicola, a New Ascosporic Yeast with Potential for Biocontrol of Postharvest Fruit Rots

Kurtzman, C. P., & Droby, S. (2001) · Systematic and Applied Microbiology · doi:10.1078/0723-2020-00045 · Cited by 175

Colletotrichum species associated with cultivated citrus in China

Huang, F., Chen, G. Q., Hou, X., Fu, Y. S., Cai, L., Hyde, K. D., & Li, H. Y. (2013) · Fungal Diversity · doi:10.1007/s13225-013-0232-y · Cited by 171

Limitations of Metazoan 18S rRNA Sequence Data: Implications for Reconstructing a Phylogeny of the Animal Kingdom and Inferring the Reality of the Cambrian Explosion

Abouheif, E., Zardoya, R., & Meyer, A. (1998) · Journal of Molecular Evolution · doi:10.1007/pl00006397 · Cited by 167

Identification of tgh-2, a Filarial Nematode Homolog of Caenorhabditis elegans daf-7 and Human Transforming Growth Factor β, Expressed in Microfilarial and Adult Stages of Brugia malayi

Gomez-Escobar, N., Gregory, W. F., & Maizels, R. M. (2000) · Infection and Immunity · doi:10.1128/iai.68.11.6402-6410.2000 · Cited by 162

Phylogeny of eukaryotes based on ribosomal RNA: Long-branch attraction and models of sequence evolution

Philippe* and, H., & Germot, A. (2000) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a026362 · Cited by 154

Genomic data support the hominoid slowdown and an Early Oligocene estimate for the hominoid-cercopithecoid divergence.

Steiper, M. E., Young, N. M., & Sukarna, T. Y. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0407270101 · Cited by 149

Budhead,a Fork Head/HNF-3 Homologue, Is Expressed during Axis Formation and Head Specification in Hydra

Martinez, D. E., Dirksen, M.-L., Bode, P. M., Jamrich, M., Steele, R. E., & Bode, H. R. (1997) · Developmental Biology · doi:10.1006/dbio.1997.8715 · Cited by 150

Acoustic Signals and Speciation: The Roles of Natural and Sexual Selection in the Evolution of Cryptic Species

Jones, G. (1997) · Advances in the Study of Behavior · doi:10.1016/s0065-3454(08)60383-6 · Cited by 135

Untitled work

(1994) · PubMed · Cited by 123

A fully resolved genus level phylogeny of neotropical primates (Platyrrhini)

Wildman, D. E., Jameson, N. M., Opazo, J. C., & Yi, S. V. (2009) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2009.07.019 · Cited by 122

Indo-European and Asian origins for Chilean and Pacific chickens revealed by mtDNA

Gongora, J., Rawlence, N. J., Mobegi, V. A., Jianlin, H., Alcalde, J. A., Matus, J. T., Hanotte, O., Moran, C., Austin, J. J., Ulm, S., et al. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0801991105 · Cited by 117

Sequence divergence of mitochondrial DNA indicates cryptic biodiversity in octopus vulgaris and supports the taxonomic distinctiveness of octopus mimus (Cephalopoda: Octopodidae)

Söller, R., Warnke, K., Saint-Paul, U., & Blohm, D. (2000) · Marine Biology · doi:10.1007/s002270050004 · Cited by 112

Multiple ancient origins of neoteny in Lycidae (Coleoptera): consequences for ecology and macroevolution

Bocak, L., Bocakova, M., Hunt, T., & Vogler, A. P. (2008) · Proceedings of the Royal Society B: Biological Sciences · doi:10.1098/rspb.2008.0476 · Cited by 103

SEQUESTRATION, PERFORMANCE, AND FUNCTIONAL CONTROL OF CRYPTOPHYTE PLASTIDS IN THE CILIATE MYRIONECTA RUBRA (CILIOPHORA)1

Johnson, M. D., Tengs, T., Oldach, D., & Stoecker, D. K. (2006) · Journal of Phycology · doi:10.1111/j.1529-8817.2006.00275.x · Cited by 97

Evolutionary affinities of the enigmatic saola (Pseudoryx nghetinhensis) in the context of the molecular phylogeny of Bovidae

Hassanin, A., & Douzery, E. J. P. (1999) · Proceedings of the Royal Society of London. Series B: Biological Sciences · doi:10.1098/rspb.1999.0720 · Cited by 90

Organization of an echinoderm Hox gene cluster

Martinez, P., Rast, J. P., Arenas-Mena, C., & Davidson, E. H. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.4.1469 · Cited by 85

Aryl hydrocarbon receptor polymorphisms and dioxin resistance in Atlantic killifish (Fundulus heteroclitus)

Hahn, M. E., Karchner, S. I., Franks, D. G., & Merson, R. R. (2004) · Pharmacogenetics · doi:10.1097/00008571-200402000-00007 · Cited by 71

Quantitative assessment of Hox complex expression in the indirect development of the polychaete annelid Chaetopterus sp.

Peterson, K. J., Irvine, S. Q., Cameron, R. A., & Davidson, E. H. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.97.9.4487 · Cited by 47

Sex- and tissue-specific expression of aspartic proteinases in Danio rerio (zebrafish)

Riggio, M., Scudiero, R., Filosa, S., & Parisi, E. (2000) · Gene · doi:10.1016/s0378-1119(00)00469-8 · Cited by 38

Lack of host specificity of Colletotrichum spp. isolates associated with anthracnose symptoms on mango in Brazil

de Souza, A., Delphino Carboni, R. C., Wickert, E., de Macedo Lemos, E. G., & de Goes, A. (2013) · Plant Pathology · doi:10.1111/ppa.12021 · Cited by 33

CDR4 is the major contributor to azole resistance among four Pdr5p-like ABC transporters in Neurospora crassa.

Zhang, Y., Zhang, Z., Zhang, X., Zhang, H., Sun, X., Hu, C., & Li, S. (2012) · Fungal Biology · doi:10.1016/j.funbio.2012.05.002 · Cited by 32

Patterns of genetic polymorphism in five species of penguins

Karron, J. D. (1994) · The Auk · doi:10.2307/4088838 · Cited by 12