Gene Copy-Number Alterations: A Cost-Benefit Analysis
Open accessAbstract
Changes in DNA copy number, whether confined to specific genes or affecting whole chromosomes, have been identified as causes of diseases and developmental abnormalities and as sources of adaptive potential. Here, we discuss the costs and benefits of DNA copy-number alterations. Changes in DNA copy number are largely detrimental. Amplifications or deletions of specific genes can elicit discrete defects. Large-scale changes in DNA copy number can also cause detrimental phenotypes that are due to the cumulative effects of copy-number alterations of many genes simultaneously. On the other hand, studies in microorganisms show that DNA copy-number alterations can be beneficial, increasing survival under selective pressure. As DNA copy-number alterations underlie many human diseases, we will end with a discussion of gene copy-number changes as therapeutic targets.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The toolbox model suggests that prokaryotic metabolic pathways emerge through horizontal gene transfer and are rapidly acquired and lost based on nutrient availability.
“This so-called toolbox model suggests that prokaryotic metabolic pathways emerge through horizontal gene transfer (HGT) and are rapidly acquired and lost based on nutrient availability [132].”
From Adaptive laboratory evolution—Principles and applications for biotechnology (2013) · cites this paper as [132]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Slamon, D. J., Clark, G. M., Wong, S. G., Levin, W. J., Ullrich, A., & McGuire, W. L. (1987) · Science · doi:10.1126/science.3798106 · Cited by 11,760 · see citing works
<i>EGFR</i> Mutations in Lung Cancer: Correlation with Clinical Response to Gefitinib Therapy
Paez, J. G., Jänne, P. A., Lee, J. C., Tracy, S., Greulich, H., Gabriel, S., Herman, P., Kaye, F. J., Lindeman, N., Boggon, T. J., et al. (2004) · Science · doi:10.1126/science.1099314 · Cited by 9,368 · see citing works
Oncogenic ras provokes premature cell senescence associated with accumulation of p53 and p16INK4a
Serrano, M., Lin, A. W., McCurrach, M. E., Beach, D., & Lowe, S. W. (1997) · Cell · doi:10.1016/s0092-8674(00)81902-9 · Cited by 5,178 · see citing works
Genomic Expression Programs in the Response of Yeast Cells to Environmental Changes
Gasch, A. P., Spellman, P. T., Kao, C. M., Carmel-Harel, O., Eisen, M. B., Storz, G., Botstein, D., & Brown, P. O. (2000) · Molecular Biology of the Cell · doi:10.1091/mbc.11.12.4241 · Cited by 4,815 · see citing works
α-Synuclein Locus Triplication Causes Parkinson's Disease
Singleton, A. B., Farrer, M., Johnson, J., Singleton, A., Hague, S., Kachergus, J., Hulihan, M., Peuralinna, T., Dutra, A., Nussbaum, R., et al. (2003) · Science · doi:10.1126/science.1090278 · Cited by 4,383 · see citing works
Detection of large-scale variation in the human genome
Iafrate, A. J., Feuk, L., Rivera, M. N., Listewnik, M. L., Donahoe, P. K., Qi, Y., Scherer, S. W., & Lee, C. (2004) · Nature Genetics · doi:10.1038/ng1416 · Cited by 2,892 · see citing works
Large-scale copy number polymorphism in the human genome
Sebat, J., Lakshmi, B., Troge, J., Alexander, J., Young, J., Lundin, P., Månér, S., Massa, H., Walker, M., Chi, M., et al. (2004) · Science · doi:10.1126/science.1098918 · Cited by 2,557 · see citing works
Bortezomib or High-Dose Dexamethasone for Relapsed Multiple Myeloma
Richardson, P. G. G., Sonneveld, P., Schuster, M. W., Irwin, D. H., Stadtmauer, E. A., Facon, T. T. F., Harousseau, J., Ben‐Yehuda, D., Lonial, S., Goldschmidt, H., et al. (2005) · New England Journal of Medicine · doi:10.1056/nejmoa043445 · Cited by 2,488 · see citing works
Massive genomic rearrangement acquired in a single catastrophic event during cancer development
Stephens, P. J., Greenman, C. D., Fu, B., Yang, F., Bignell, G. R., Mudie, L. J., Pleasance, E. D., Lau, K. W., Beare, D., Stebbings, L. A., et al. (2011) · Cell · doi:10.1016/j.cell.2010.11.055 · Cited by 2,414 · see citing works
Structural variation in the human genome
Feuk, L., Carson, A. R., & Scherer, S. W. (2006) · Nature Reviews Genetics · doi:10.1038/nrg1767 · Cited by 2,051 · see citing works
Relative Impact of Nucleotide and Copy Number Variation on Gene Expression Phenotypes
Stranger, B. E., Forrest, M. S., Dunning, M., Ingle, C., Beazley, C., Thorne, N., Redon, R., Bird, C., Grassi, A., Lee, C., et al. (2007) · Science · doi:10.1126/science.1136678 · Cited by 1,709 · see citing works
Genome structural variation discovery and genotyping
Alkan, C., Coe, B. P., & Eichler, E. E. (2011) · Nature Reviews Genetics · doi:10.1038/nrg2958 · Cited by 1,630 · see citing works
Kruse, J.-P., & Gu, W. (2009) · Cell · doi:10.1016/j.cell.2009.04.050 · Cited by 1,610 · cited 1× · see citing works
“Indeed, p53 inactivation is a major contributor to tumorigenesis (Dai and Gu, 2010; Kruse and Gu, 2009; Toledo and Wahl, 2006).”
Regulating the p53 pathway: in vitro hypotheses, in vivo veritas
Toledo, F., & Wahl, G. M. (2006) · Nature reviews. Cancer · doi:10.1038/nrc2012 · Cited by 1,286 · see citing works
DNA breaks and chromosome pulverization from errors in mitosis
Crasta, K., Ganem, N. J., Dagher, R., Lantermann, A. B., Ivanova, E. V., Pan, Y., Nezi, L., Protopopov, A., Chowdhury, D., & Pellman, D. (2012) · Nature · doi:10.1038/nature10802 · Cited by 1,227 · see citing works
Copy number variation in human health, disease, and evolution
Zhang, F., Gu, W., Hurles, M. E., & Lupski, J. R. (2009) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev.genom.9.081307.164217 · Cited by 1,207 · see citing works
The AMP-activated protein kinase cascade – a unifying system for energy control
Carling, D. (2003) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2003.11.005 · Cited by 1,112 · see citing works
THE MOLECULAR BASIS OF DOMINANCE
KACSER, H., & Burns, J. A. (1981) · Genetics · doi:10.1093/genetics/97.3-4.639 · Cited by 1,040 · see citing works
Zhong, Y., Wang, Q. J., Li, X., Yan, Y., Backer, J. M., Chait, B. T., Heintz, N., & Yue, Z. (2009) · Nature Cell Biology · doi:10.1038/ncb1854 · Cited by 1,005 · see citing works
Baselga, J. M., Norton, L., Albanell, J., Kim, Y. M., & Mendelsohn, J. M. (1998) · PubMed · Cited by 996 · see citing works
Enhancement of proteasome activity by a small-molecule inhibitor of USP14
Lee, B., Lee, M. J., Park, S., Oh, D., Elsasser, S., Chen, P., Gartner, C. A., Dimova, N. V., Hanna, J. W., Gygi, S. P., et al. (2010) · Nature · doi:10.1038/nature09299 · Cited by 943 · see citing works
Effects of Aneuploidy on Cellular Physiology and Cell Division in Haploid Yeast
Torres, E. M., Sokolsky, T., Tucker, C. M., Chan, L. Y., Boselli, M., Dunham, M. J., & Amon, A. (2007) · Science · doi:10.1126/science.1142210 · Cited by 935 · see citing works
Self-citationCNVs: Harbingers of a Rare Variant Revolution in Psychiatric Genetics
Malhotra, D., & Sebat, J. (2012) · Cell · doi:10.1016/j.cell.2012.02.039 · Cited by 854 · see citing works
Mortality associated with Down's syndrome in the USA from 1983 to 1997: a population-based study
Yang, Q., Rasmussen, S. A., & Friedman, J. M. (2002) · The Lancet · doi:10.1016/s0140-6736(02)08092-3 · Cited by 847 · see citing works
Causes and consequences of aneuploidy in cancer
Gordon, D. J., Resio, B. J., & Pellman, D. S. (2012) · Nature Reviews Genetics · doi:10.1038/nrg3123 · Cited by 818 · see citing works
Specific Gene Amplification in Oocytes
Brown, D. D., & Dawid, I. B. (1968) · Science · doi:10.1126/science.160.3825.272 · Cited by 809 · see citing works
Aneuploidy and Isochromosome Formation in Drug-Resistant <i>Candida albicans</i>
Selmecki, A., Forche, A., & Berman, J. (2006) · Science · doi:10.1126/science.1128242 · Cited by 733 · see citing works
BubR1 insufficiency causes early onset of aging-associated phenotypes and infertility in mice
Baker, D. J., Jeganathan, K. B., Cameron, J. D., Thompson, M., Juneja, S., Kopecka, A., Kumar, R., Jenkins, R. B., de Groen, P. C., Roche, P., et al. (2004) · Nature Genetics · doi:10.1038/ng1382 · Cited by 731 · see citing works
Aneuploidy Acts Both Oncogenically and as a Tumor Suppressor
Weaver, B. A. A., Silk, A. D., Montagna, C., Verdier-Pinard, P., & Cleveland, D. W. (2007) · Cancer Cell · doi:10.1016/j.ccr.2006.12.003 · Cited by 729 · see citing works
Amyloid-like Aggregates Sequester Numerous Metastable Proteins with Essential Cellular Functions
Olzscha, H., Schermann, S. M., Woerner, A. C., Pinkert, S., Hecht, M. H., Tartaglia, G. G., Vendruscolo, M., Hayer-Hartl, M. K., Hartl, F. U., & Vabulas, R. M. (2011) · Cell · doi:10.1016/j.cell.2010.11.050 · Cited by 679 · see citing works
Aneuploidy Affects Proliferation and Spontaneous Immortalization in Mammalian Cells
Williams, B. R., Prabhu, V. R., Hunter, K. E., Glazier, C. M., Whittaker, C. A., Housman, D. E., & Amon, A. (2008) · Science · doi:10.1126/science.1160058 · Cited by 665 · see citing works
Self-citationHassold, T. J., & Jacobs, P. A. (1984) · Annual Review of Genetics · doi:10.1146/annurev.ge.18.120184.000441 · Cited by 653 · see citing works
Constitutional aneuploidy and cancer predisposition caused by biallelic mutations in BUB1B
Hanks, S., Coleman, K., Reid, S., Plaja, A., Firth, H., Fitzpatrick, D., Kidd, A., Méhes, K., Nash, R., Robin, N. H., et al. (2004) · Nature Genetics · doi:10.1038/ng1449 · Cited by 627 · see citing works
E1A signaling to p53 involves the p19ARFtumor suppressorPreprint
de Stanchina, E., McCurrach, M. E., Zindy, F., Shieh, S.-Y., Ferbeyre, G., Samuelson, A. V., Prives, C. L., Roussel, M. F., Sherr, C. J., & Lowe, S. W. (1998) · Genes & Development · doi:10.1101/gad.12.15.2434 · Cited by 607 · see citing works
Population analysis of large copy number variants and hotspots of human genetic disease
Itsara, A., Cooper, G. M., Baker, C., Girirajan, S., Li, J., Absher, D., Krauss, R. M., Myers, R. M., Ridker, P. M., Chasman, D. I., et al. (2009) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2008.12.014 · Cited by 591 · see citing works
Chromosome Segregation Errors as a Cause of DNA Damage and Structural Chromosome Aberrations
Janssen, A., van der Burg, M. J., Szuhai, K., Kops, G. J. P. L., & Medema, R. H. (2011) · Science · doi:10.1126/science.1210214 · Cited by 582 · see citing works
Aneuploidy confers quantitative proteome changes and phenotypic variation in budding yeast
Pavelka, N., Rancati, G., Zhu, J., Bradford, W. D., Saraf, A., Florens, L., Sanderson, B. W., Hattem, G. L., & Li, R. (2010) · Nature · doi:10.1038/nature09529 · Cited by 577 · see citing works
Dunham, M. J., Badrane, H., Ferea, T., Adams, J., Brown, P. O., Rosenzweig, F., & Botstein, D. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.242624799 · Cited by 564 · see citing works
Coordination of Growth Rate, Cell Cycle, Stress Response, and Metabolic Activity in Yeast
Brauer, M. J., Huttenhower, C., Airoldi, E. M., Rosenstein, R., Matese, J. C., Gresham, D., Boer, V. M., Troyanskaya, O. G., & Botstein, D. (2008) · Molecular Biology of the Cell · doi:10.1091/mbc.e07-08-0779 · Cited by 558 · see citing works
The ploidy conveyor of mature hepatocytes as a source of genetic variation
Duncan, A. W., Taylor, M. H., Hickey, R. D., Hanlon Newell, A. E., Lenzi, M. L., Olson, S. B., Finegold, M. J., & Grompe, M. (2010) · Nature · doi:10.1038/nature09414 · Cited by 525 · see citing works
Chromosome Missegregation and Apoptosis in Mice Lacking the Mitotic Checkpoint Protein Mad2
Dobles, M., Liberal, V., Scott, M. L., Benezra, R., & Sorger, P. K. (2000) · Cell · doi:10.1016/s0092-8674(00)80875-2 · Cited by 525 · see citing works
p53 post-translational modification: deregulated in tumorigenesis
Dai, C., & Gu, W. J. (2010) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2010.09.002 · Cited by 523 · see citing works
Examining the link between chromosomal instability and aneuploidy in human cells
Thompson, S. L., & Compton, D. A. (2008) · The Journal of Cell Biology · doi:10.1083/jcb.200712029 · Cited by 521 · see citing works
Dosage compensation of the active X chromosome in mammals
Nguyen, D. K., & Distèche, C. M. (2005) · Nature Genetics · doi:10.1038/ng1705 · Cited by 495 · see citing works
Proliferation of aneuploid human cells is limited by a p53-dependent mechanism
Thompson, S. L., & Compton, D. A. (2010) · Journal of Cell Biology · doi:10.1083/jcb.200905057 · Cited by 494 · see citing works
Gresham, D., Desai, M. M., Tucker, C. M., Jenq, H. T., Pai, D. A., Ward, A., DeSevo, C. G., Botstein, D., & Dunham, M. J. (2008) · PLoS Genetics · doi:10.1371/journal.pgen.1000303 · Cited by 482 · see citing works
Yang, Y., Chung, E. K., Wu, Y. L., Savelli, S., Nagaraja, H. N., Zhou, B., Hebert, M., Jones, K. N., Shu, Y., Kitzmiller, K. J., et al. (2007) · The American Journal of Human Genetics · doi:10.1086/518257 · Cited by 471 · see citing works
Stingele, S., Stoehr, G., Peplowska, K., Cox, J., Mann, M., & Štorchová, Z. (2012) · Molecular Systems Biology · doi:10.1038/msb.2012.40 · Cited by 449 · see citing works
Genomic rearrangements and sporadic disease
Lupski, J. R. (2007) · Nature Genetics · doi:10.1038/ng2084 · Cited by 424 · see citing works
Aneuploidy: Cells Losing Their Balance
Torres, E. M., Williams, B. R., & Amon, A. (2008) · Genetics · doi:10.1534/genetics.108.090878 · Cited by 409 · see citing works
Self-citationAneuploidy Drives Genomic Instability in Yeast
Sheltzer, J. M., Blank, H. M., Pfau, S. J., Tange, Y., George, B. M., Humpton, T. J., Brito, I., Hiraoka, Y., Niwa, O., & Amon, A. (2011) · Science · doi:10.1126/science.1206412 · Cited by 398 · see citing works
Self-citationKobayashi, T., Heck, D. J., Nomura, M., & Horiuchi, T. (1998) · Genes & Development · doi:10.1101/gad.12.24.3821 · Cited by 389 · see citing works
Genes that escape from X inactivation
Berletch, J. B., Yang, F., Xu, J., Carrel, L., & Disteche, C. M. (2011) · Human Genetics · doi:10.1007/s00439-011-1011-z · Cited by 384 · see citing works
Differential synthesis of the genes for ribosomal RNA during amphibian oögenesis.
Gall, J. G. (1968) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.60.2.553 · Cited by 383 · see citing works
Chromosomal duplication is a transient evolutionary solution to stress
Yona, A. H., Manor, Y. S., Herbst, R. H., Romano, G. H., Mitchell, A., Kupiec, M., Pilpel, Y., & Dahan, O. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1211150109 · Cited by 376 · see citing works
Identification of Aneuploidy-Tolerating Mutations
Torres, E. M., Dephoure, N., Panneerselvam, A., Tucker, C. M., Whittaker, C. A., Gygi, S. P., Dunham, M. J., & Amon, A. (2010) · Cell · doi:10.1016/j.cell.2010.08.038 · Cited by 371 · see citing works
Self-citationIntrinsic Protein Disorder and Interaction Promiscuity Are Widely Associated with Dosage Sensitivity
Vavouri, T., Semple, J. I., García-Verdugo, R., & Lehner, B. (2009) · Cell · doi:10.1016/j.cell.2009.04.029 · Cited by 368 · see citing works
Human Copy Number Variation and Complex Genetic Disease
Girirajan, S., Campbell, C. D., & Eichler, E. E. (2011) · Annual Review of Genetics · doi:10.1146/annurev-genet-102209-163544 · Cited by 367 · see citing works
Genome-wide genetic analysis of polyploidy in yeast
Štorchová, Z., Breneman, A., Cande, J., Dunn, J. G., Burbank, K. S., O'Toole, E. T., & Pellman, D. S. (2006) · Nature · doi:10.1038/nature05178 · Cited by 360 · see citing works
Identification of Aneuploidy-Selective Antiproliferation Compounds
Tang, Y., Williams, B. R., Siegel, J. J., & Amon, A. (2011) · Cell · doi:10.1016/j.cell.2011.01.017 · Cited by 347 · see citing works
Self-citationRancati, G. I., Pavelka, N., Fleharty, B., Noll, A. C., Trimble, R., Walton, K., Perera, A. G., Staehling‐Hampton, K., Seidel, C. W., & Li, R. (2008) · Cell · doi:10.1016/j.cell.2008.09.039 · Cited by 335 · see citing works
Unstable Kinetochore-Microtubule Capture and Chromosomal Instability Following Deletion of CENP-E
Putkey, F. R., Cramer, T., Morphew, M. K., Silk, A. D., Johnson, R. S., McIntosh, J. R., & Cleveland, D. W. (2002) · Developmental Cell · doi:10.1016/s1534-5807(02)00255-1 · Cited by 331 · see citing works
Chromosomal variation in neurons of the developing and adult mammalian nervous system
Rehen, S. K., McConnell, M. J., Kaushal, D., Kingsbury, M. A., Yang, A. H., & Chun, J. J. M. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.231487398 · Cited by 328 · see citing works
De novo rates and selection of large copy number variation
Itsara, A., Wu, H., Smith, J. D., Nickerson, D. A., Romieu, I., London, S. J., & Eichler, E. E. (2010) · Genome Research · doi:10.1101/gr.107680.110 · Cited by 328 · cited 2× · see citing works
“Sequencing of human populations revealed that CNVs are rare, occurring at a frequency of less than 1 percent (Itsara et al., 2009) and that they are under strong negative selection (Itsara et al., 2010).”
Regulation of APC/C Activators in Mitosis and Meiosis
Pesin, J. A., & Orr‐Weaver, T. L. (2008) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev.cellbio.041408.115949 · Cited by 321 · see citing works
Constitutional Aneuploidy in the Normal Human Brain
Rehen, S. K., Yung, Y. C., McCreight, M. P., Kaushal, D., Yang, A. H., Almeida, B. S. V., Kingsbury, M. A., Cabral, K. M. D. S., McConnell, M. J., Anliker, B., et al. (2005) · Journal of Neuroscience · doi:10.1523/jneurosci.4560-04.2005 · Cited by 320 · see citing works
Kao, K. C., & Sherlock, G. J. (2008) · Nature Genetics · doi:10.1038/ng.280 · Cited by 314 · see citing works
Segmental copy number variation shapes tissue transcriptomes
Hor, C. N., Vinckenbosch, N., Zöllner, S. K., Chaignat, E., Pradervand, S., Schütz, F., Rüedi, M., Kaessmann, H., & Reymond, A. (2009) · Nature Genetics · doi:10.1038/ng.345 · Cited by 308 · see citing works
Aneuploidy causes proteotoxic stress in yeastPreprint
Oromendia, A. B., Dodgson, S. E., & Amon, A. (2012) · Genes & Development · doi:10.1101/gad.207407.112 · Cited by 307 · see citing works
Self-citationBrown, C. J., Todd, K., & Rosenzweig, R. F. (1998) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a026009 · Cited by 307 · see citing works
Transcriptional consequences of aneuploidy
Sheltzer, J. M., Torres, E. M., Dunham, M. J., & Amon, A. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1209227109 · Cited by 290 · see citing works
Self-citationExploring the etiology of haploinsufficiency
Veitia, R. A. (2002) · BioEssays · doi:10.1002/bies.10023 · Cited by 289 · see citing works
Losing balance: the origin and impact of aneuploidy in cancer
Holland, A. J., & Cleveland, D. W. (2012) · EMBO Reports · doi:10.1038/embor.2012.55 · Cited by 288 · see citing works
Geiler‐Samerotte, K., Dion, M. F., Budnik, B., Wang, S. M., Hartl, D. L., & Drummond, D. A. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1017570108 · Cited by 285 · see citing works
The organization and amplification of two chromosomal domains containing drosophila chorion genes
Spradling, A. C. (1981) · Cell · doi:10.1016/0092-8674(81)90373-1 · Cited by 260 · see citing works
The ATM–p53 pathway suppresses aneuploidy-induced tumorigenesis
Li, M., Fang, X., Baker, D. J., Guo, L., Gao, X., Wei, Z., Han, S., van Deursen, J. M., & Zhang, P. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1005960107 · Cited by 257 · see citing works
Kahlem, P., Sultan, M., Herwig, R., Steinfath, M., Balzereit, D., Eppens, B., Saran, N. G., Pletcher, M. T., South, S. T., Stetten, G., et al. (2004) · Genome Research · doi:10.1101/gr.1951304 · Cited by 249 · see citing works
Regenberg, B., Grotkjær, T., Winther, O., Fausbøll, A., Åkesson, M., Bro, C., Hansen, L. K., Brunak, S., & Nielsen, J. (2006) · Genome biology · doi:10.1186/gb-2006-7-11-r107 · Cited by 238 · see citing works
Cancer vulnerabilities unveiled by genomic loss
Nijhawan, D., Zack, T., Ren, Y., Strickland, M., Lamothe, R., Schumacher, S., Tsherniak, A., Besche, H. C., Rosenbluh, J., Shehata, S., et al. (2012) · Cell · doi:10.1016/j.cell.2012.07.023 · Cited by 224 · see citing works
Systematic approach to the study of trisomy in the mouse. II
Gropp, A., Kolbus, U., & Giers, D. (2008) · Cytogenetics and Cell Genetics · doi:10.1159/000130318 · Cited by 211 · see citing works
Comparative genomics of the environmental stress response in ascomycete fungi
Gasch, A. P. (2007) · Yeast · doi:10.1002/yea.1512 · Cited by 210 · see citing works
Gene Expression From the Aneuploid Chromosome in a Trisomy Mouse Model of Down SyndromePreprint
Lyle, R., Gehrig, C., Neergaard-Henrichsen, C., Deutsch, S., & Antonarakis, S. E. (2004) · Genome Research · doi:10.1101/gr.2090904 · Cited by 202 · see citing works
Chromosomal instability and aneuploidy in cancer: from yeast to man
Pfau, S. J., & Amon, A. (2012) · EMBO Reports · doi:10.1038/embor.2012.65 · Cited by 201 · see citing works
Self-citationTrans-Acting Dosage Effects on the Expression of Model Gene Systems in Maize Aneuploids
Guo, M., & Birchler, J. A. (1994) · Science · doi:10.1126/science.266.5193.1999 · Cited by 197 · see citing works
Upender, M. B., Habermann, J. K., McShane, L. M., Korn, E. L., Barrett, J. C., Difilippantonio, M. J., & Ried, T. (2004) · Cancer Research · doi:10.1158/0008-5472.can-04-0474 · Cited by 188 · see citing works
Recombination between short DNA homologies causes tandem duplication
Edlund, H., & Normark, S. J. (1981) · Nature · doi:10.1038/292269a0 · Cited by 188 · see citing works
Aneuploidy as a mechanism for stress-induced liver adaptation
Duncan, A. W., Newell, A. E. H., Bi, W., Finegold, M. J., Olson, S. B., Beaudet, A. L., & Grompe, M. (2012) · Journal of Clinical Investigation · doi:10.1172/jci64026 · Cited by 185 · see citing works
Gresham, D., Usaite, R., Germann, S. M., Lisby, M., Botstein, D., & Regenberg, B. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1014023107 · Cited by 140 · see citing works
Karyotypic Determinants of Chromosome Instability in Aneuploid Budding Yeast
Zhu, J., Pavelka, N., Bradford, W. D., Rancati, G. I., & Li, R. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1002719 · Cited by 136 · see citing works
Loss of spindle assembly checkpoint–mediated inhibition of Cdc20 promotes tumorigenesis in mice
Li, M., Fang, X., Wei, Z., York, J. P., & Zhang, P. (2009) · The Journal of Cell Biology · doi:10.1083/jcb.200904020 · Cited by 129 · see citing works
Katz, W. S., Weinstein, B. M., & Solomon, F. (1990) · Molecular and Cellular Biology · doi:10.1128/mcb.10.10.5286 · Cited by 127 · see citing works
Increase in GSK3β gene copy number variation in bipolar disorder
Lachman, H. M., Pedrosa, E., Petruolo, O. A., Cockerham, M. S., Papolos, A., Novák, T., Papolos, D. F., & Stopková, P. (2007) · American Journal of Medical Genetics Part B Neuropsychiatric Genetics · doi:10.1002/ajmg.b.30498 · Cited by 127 · see citing works
Mechanisms Underlying the Dual-Mode Regulation of Microtubule Dynamics by Kip3/Kinesin-8
Su, X., Qiu, W., Gupta, M. L., Pereira‐Leal, J. B., Reck‐Peterson, S. L., & Pellman, D. S. (2011) · Molecular Cell · doi:10.1016/j.molcel.2011.06.027 · Cited by 123 · see citing works
Aneuploid mosaicism in the developing and adult cerebellar cortex
Westra, J. W., Peterson, S. E., Yung, Y. C., Mutoh, T., Barral, S., & Chun, J. J. M. (2008) · The Journal of Comparative Neurology · doi:10.1002/cne.21648 · Cited by 122 · see citing works
Yao, M.-C., Kimmel, A. R., & Gorovsky, M. A. (1974) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.71.8.3082 · Cited by 117 · see citing works
Developmental gene amplification: insights into DNA replication and gene expression
Claycomb, J. M., & Orr‐Weaver, T. L. (2005) · Trends in Genetics · doi:10.1016/j.tig.2005.01.009 · Cited by 113 · see citing works
Generating chromosome instability through the simultaneous deletion of Mad2 and p53
Burds, A. A., Lutum, A. S., & Sorger, P. K. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0505053102 · Cited by 109 · see citing works
Hüettel, B., Kreil, D. P., Matzke, M. A., & Matzke, A. J. M. (2008) · PLoS Genetics · doi:10.1371/journal.pgen.1000226 · Cited by 109 · see citing works
Regulation of DNA replication during development
Nordman, J. T., & Orr‐Weaver, T. L. (2012) · Development · doi:10.1242/dev.061838 · Cited by 104 · see citing works
Toxic Effects of Excess Cloned Centromeres
Futcher, B., & Carbon, J. A. (1986) · Molecular and Cellular Biology · doi:10.1128/mcb.6.6.2213-2222.1986 · Cited by 96 · see citing works
Aneuploidy in the normal and diseased brain
Kingsbury, M. A., Yung, Y. C., Peterson, S. E., Westra, J. W., & Chun, J. J. M. (2006) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-006-6169-5 · Cited by 94 · see citing works
Runge, K. W., & Zakian, V. A. (1989) · Molecular and Cellular Biology · doi:10.1128/mcb.9.4.1488 · Cited by 94 · see citing works
Wolman, S. R., Gundacker, H. M., Appelbaum, F. R., & Slovak, M. L. (2002) · Blood · doi:10.1182/blood.v100.1.29 · Cited by 93 · see citing works
Another way to move chromosomes
Chikashige, Y., Haraguchi, T., & Hiraoka, Y. (2007) · Chromosoma · doi:10.1007/s00412-007-0114-8 · Cited by 90 · see citing works
Painting of fourth, a chromosome-specific protein in Drosophila
Larsson, J., Chen, J. D., Rasheva, V. I., Rasmuson-Lestander, Å., & Pirrotta, V. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.111581298 · Cited by 80 · see citing works
Dosage compensation and the global re-balancing of aneuploid genomes
Prestel, M., Feller, C., & Becker, P. B. (2010) · Genome biology · doi:10.1186/gb-2010-11-8-216 · Cited by 75 · see citing works
Growth arrest and chromosome instability in aneuploid yeast
Niwa, O., Tange, Y., & Kurabayashi, A. (2006) · Yeast · doi:10.1002/yea.1411 · Cited by 74 · see citing works
Gain of MYC underlies recurrent trisomy of the MYC chromosome in acute promyelocytic leukemia
Jones, L. C., Wei, G., Ševčı́ková, S., Phan, V. T., Jain, S., Shieh, A., Wong, J. C. Y., Li, M., Dubansky, J., Maunakea, M. L., et al. (2010) · The Journal of Experimental Medicine · doi:10.1084/jem.20091071 · Cited by 71 · see citing works
Pathogenesis of Charcot–Marie–Tooth 1A (CMT1A) neuropathy
Hanemann, C. O., & Müller, H. W. (1998) · Trends in Neurosciences · doi:10.1016/s0166-2236(97)01222-8 · Cited by 65 · see citing works
Toxic effects of excess cloned centromeres.
Futcher, B., & Carbon, J. A. (1986) · Molecular and Cellular Biology · doi:10.1128/mcb.6.6.2213 · Cited by 65 · see citing works
Buffering and the evolution of chromosome-wide gene regulation
Stenberg, P., & Larsson, J. (2011) · Chromosoma · doi:10.1007/s00412-011-0319-8 · Cited by 57 · see citing works
Kim, J. C., Nordman, J. T., Xie, F., Kashevsky, H., Eng, T., Li, S., MacAlpine, D. M., & Orr‐Weaver, T. L. (2011) · Genes & Development · doi:10.1101/gad.2043111 · Cited by 53 · see citing works
Katz, W. S., Weinstein, B. M., & Solomon, F. (1990) · Molecular and Cellular Biology · doi:10.1128/mcb.10.10.5286-5294.1990 · Cited by 48 · see citing works
Fragilities Caused by Dosage Imbalance in Regulation of the Budding Yeast Cell Cycle
Kaizu, K., Moriya, H., & Kitano, H. (2010) · PLoS Genetics · doi:10.1371/journal.pgen.1000919 · Cited by 47 · see citing works
Segmental trisomy of chromosome 17: A mouse model of human aneuploidy syndromes
Vacı́k, T., Ort, M., Gregorová, S., Strnad, P., Blatný, R., Conte, N., Bradley, A., Bureš, J., & Forejt, J. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0500802102 · Cited by 43 · see citing works
Differential Gene Expression and Epiregulation of Alpha Zein Gene Copies in Maize Haplotypes
Miclăuș, M., Xu, J., & Messing, J. W. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002131 · Cited by 39 · see citing works
Runge, K. W., & Zakian, V. A. (1989) · Molecular and Cellular Biology · doi:10.1128/mcb.9.4.1488-1497.1989 · Cited by 31 · see citing works
Oakes, M., Johzuka, K., Vũ, L., Eliason, K., & Nomura, M. (2006) · Molecular and Cellular Biology · doi:10.1128/mcb.02324-05 · Cited by 30 · see citing works
[Behavior of mice with robertsonian translocations of chromosomes].
Krushinskiĭ, L. V., Dyban, A. P., Баранов, В. С., Poletaeva, I. I., & Lg, R. (1986) · PubMed · Cited by 6 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
On the Dependency of Cellular Protein Levels on mRNA Abundance
Liu, Y., Beyer, A., & Aebersold, R. (2016) · Cell · doi:10.1016/j.cell.2016.03.014 · Cited by 3,221 · see citing works
Genomic and Functional Approaches to Understanding Cancer Aneuploidy
Taylor, A. M., Shih, J., Ha, G., Gao, G. F., Zhang, X., Berger, A. C., Schumacher, S. E., Wang, C., Hu, H., Liu, J., et al. (2018) · Cancer Cell · doi:10.1016/j.ccell.2018.03.007 · Cited by 1,027 · see citing works
Intratumor Heterogeneity: The Rosetta Stone of Therapy Resistance
Marusyk, A., Janiszewska, M., & Polyak, K. (2020) · Cancer Cell · doi:10.1016/j.ccell.2020.03.007 · Cited by 1,009 · see citing works
Adaptive laboratory evolution—Principles and applications for biotechnology
Dragosits, M., & Mattanovich, D. (2013) · Microbial Cell Factories · doi:10.1186/1475-2859-12-64 · Cited by 827 · see citing works
Davoli, T., Xu, A. W., Mengwasser, K. E., Sack, L. M., Yoon, J. C., Park, P. J., & Elledge, S. J. (2013) · Cell · doi:10.1016/j.cell.2013.10.011 · Cited by 815 · see citing works
Resolving genetic heterogeneity in cancer
Turajlic, S., Sottoriva, A., Graham, T. A., & Swanton, C. (2019) · Nature Reviews Genetics · doi:10.1038/s41576-019-0114-6 · Cited by 655 · see citing works
Copy number variation at the GL7 locus contributes to grain size diversity in rice
Wang, Y., Xiong, G., Hu, J., Jiang, L., Yu, H. J., Xu, J., Fang, Y., Zeng, L., Xu, E., Xu, J., et al. (2015) · Nature Genetics · doi:10.1038/ng.3346 · Cited by 647 · see citing works
Short- and long-term effects of chromosome mis-segregation and aneuploidy
Santaguida, S., & Amon, A. (2015) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm4025 · Cited by 551 · see citing works
Self-citationNi, X., Zhuo, M., Su, Z., Duan, J., Gao, Y., Wang, Z., Zong, C., Bai, H., Chapman, A. R., Zhao, J., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1320659110 · Cited by 454 · see citing works
Determinants and clinical implications of chromosomal instability in cancer
Sansregret, L., Vanhaesebroeck, B., & Swanton, C. (2018) · Nature Reviews Clinical Oncology · doi:10.1038/nrclinonc.2017.198 · Cited by 396 · see citing works
Santaguida, S., Richardson, A., Iyer, D., M’Saad, O., Zasadil, L. M., Knouse, K. A., Wong, Y. L., Rhind, N., Desai, A. B., & Amon, A. (2017) · Developmental Cell · doi:10.1016/j.devcel.2017.05.022 · Cited by 355 · see citing works
Self-citationThe evolution of drug resistance in clinical isolates of Candida albicans.
Ford, C. B., Funt, J. M., Abbey, D., Issi, L., Guiducci, C., Martinez, D. A., Delorey, T., Li, B. Y., White, T. C., Cuomo, C., et al. (2015) · eLife · doi:10.7554/elife.00662 · Cited by 348 · see citing works
Giladi, M., Schneiderman, R. S., Voloshin, T., Porat, Y., Munster, M., Blat, R., Sherbo, S., Bomzon, Z., Urman, N., Itzhaki, A., et al. (2015) · Scientific Reports · doi:10.1038/srep18046 · Cited by 327 · see citing works
Selection and adaptation during metastatic cancer progression
Klein, C. A. (2013) · Nature · doi:10.1038/nature12628 · Cited by 268 · see citing works
Bursty Gene Expression in the Intact Mammalian Liver
Halpern, K. B., Tanami, S., Landen, S., Chapal, M., Szlak, L., Hutzler, A., Nizhberg, A., & Itzkovitz, S. (2015) · Molecular Cell · doi:10.1016/j.molcel.2015.01.027 · Cited by 248 · see citing works
Proteome complexity and the forces that drive proteome imbalance
Harper, J. W., & Bennett, E. J. (2016) · Nature · doi:10.1038/nature19947 · Cited by 234 · see citing works
Low-pass whole-genome sequencing in clinical cytogenetics: a validated approach
Dong, Z., Zhang, J., Hu, P., Chen, H., Xu, J., Tian, Q., Meng, L., Ye, Y., Wang, J., Zhang, M., et al. (2016) · Genetics in Medicine · doi:10.1038/gim.2015.199 · Cited by 209 · see citing works
Plissonneau, C., Hartmann, F. E., & Croll, D. (2018) · BMC Biology · doi:10.1186/s12915-017-0457-4 · Cited by 197 · see citing works
Genome-wide Consequences of Deleting Any Single Gene
Teng, X., Dayhoff-Brannigan, M., Cheng, W., Gilbert, C. E., Sing, C. N., Diny, N. L., Wheelan, S. J., Dunham, M. J., Boeke, J. D., Pineda, F. J., et al. (2013) · Molecular Cell · doi:10.1016/j.molcel.2013.09.026 · Cited by 193 · see citing works
Aneuploidy as a promoter and suppressor of malignant growth
Vasudevan, A., Schukken, K. M., Sausville, E. L., Girish, V., Adebambo, O. A., & Sheltzer, J. M. (2021) · Nature reviews. Cancer · doi:10.1038/s41568-020-00321-1 · Cited by 176 · see citing works
Quantitative nature of overexpression experiments
Moriya, H. (2015) · Molecular Biology of the Cell · doi:10.1091/mbc.e15-07-0512 · Cited by 172 · see citing works
Kotini, A. G., Chang, C.-J., Boussaad, I., Delrow, J. J., Dolezal, E. K., Nagulapally, A. B., Perna, F., Fishbein, G. A., Klimek, V. M., Hawkins, R. D., et al. (2015) · Nature Biotechnology · doi:10.1038/nbt.3178 · Cited by 171 · see citing works
Acute phase reactant serum amyloid A in inflammation and other diseases
Zhang, Y., Zhang, J., Sheng, H., Li, H., & Wang, R. (2019) · Advances in clinical chemistry · doi:10.1016/bs.acc.2019.01.002 · Cited by 165 · see citing works
Aneuploidy: implications for protein homeostasis and disease
Oromendia, A. B., & Amon, A. (2014) · Disease Models & Mechanisms · doi:10.1242/dmm.013391 · Cited by 154 · see citing works
Self-citationCook, D. E., Bayless, A. M., Wang, K., Guo, X., Song, Q., Jiang, J., & Bent, A. F. (2014) · PLANT PHYSIOLOGY · doi:10.1104/pp.114.235952 · Cited by 151 · see citing works
MYC Is a Major Determinant of Mitotic Cell Fate
Topham, C. H., Tighe, A., Ly, P., Bennett, A., Sloss, O., Nelson, L., Ridgway, R. A., Huels, D. J., Littler, S., Schandl, C., et al. (2015) · Cancer Cell · doi:10.1016/j.ccell.2015.06.001 · Cited by 142 · see citing works
Samata, M., & Akhtar, A. (2018) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-062917-011816 · Cited by 143 · see citing works
Expandable and reversible copy number amplification drives rapid adaptation to antifungal drugs
Todd, R. T., & Selmecki, A. (2020) · eLife · doi:10.7554/elife.58349 · Cited by 138 · see citing works
FoxM1 repression during human aging leads to mitotic decline and aneuploidy-driven full senescence
Macedo, J. C., Vaz, S., Bakker, B., Ribeiro, R., Bakker, P. L., Escandell, J. M., Ferreira, M. G., Medema, R., Foijer, F., & Logarinho, E. (2018) · Nature Communications · doi:10.1038/s41467-018-05258-6 · Cited by 131 · see citing works
Zhou, C., Yang, F., Yuan, S., Ma, J., Liu, F., Yuan, J., Bi, F., Lin, K., Yin, J., Cao, G., et al. (2015) · Hepatology · doi:10.1002/hep.28393 · Cited by 122 · see citing works
Widespread Post-transcriptional Attenuation of Genomic Copy-Number Variation in Cancer
Gonçalves, E., Fragoulis, A., García‐Alonso, L., Cramer, T., Sáez-Rodríguez, J., & Beltrão, P. (2017) · Cell Systems · doi:10.1016/j.cels.2017.08.013 · Cited by 113 · see citing works
DNA Repair Mechanisms and Their Biological Roles in the Malaria Parasite Plasmodium falciparum
Lee, A. H., Symington, L. S., & Fidock, D. A. (2014) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00059-13 · Cited by 113 · see citing works
Systematic analysis of somatic mutations impacting gene expression in 12 tumour types
Ding, J., McConechy, M. K., Horlings, H. M., Ha, G., Chan, F. C., Funnell, T., Mullaly, S. C., Reimand, J., Bashashati, A., Bader, G. D., et al. (2015) · Nature Communications · doi:10.1038/ncomms9554 · Cited by 104 · see citing works
Molecular mechanisms of paralogous compensation and the robustness of cellular networks
Diss, G., Ascencio, D., DeLuna, A., & Landry, C. R. (2013) · Journal of Experimental Zoology Part B Molecular and Developmental Evolution · doi:10.1002/jez.b.22555 · Cited by 105 · see citing works
Transcriptional effects of copy number alterations in a large set of human cancers
Bhattacharya, A., Bense, R. D., Urzúa-Traslaviña, C. G., de Vries, E. G. E., van Vugt, M. A. T. M., & Fehrmann, R. S. N. (2020) · Nature Communications · doi:10.1038/s41467-020-14605-5 · Cited by 102 · see citing works
Liu, X., Xiao, M., Zhang, L., Li, L., Zhu, G., Shen, E., Lv, M., Lu, X., & Sun, Z. (2020) · Journal of Clinical Laboratory Analysis · doi:10.1002/jcla.23655 · Cited by 97 · see citing works
Aneuploidy in Cancer: Seq-ing Answers to Old Questions
Knouse, K. A., Davoli, T., Elledge, S. J., & Amon, A. (2016) · Annual Review of Cancer Biology · doi:10.1146/annurev-cancerbio-042616-072231 · Cited by 87 · see citing works
Self-citationStress, genomic adaptation, and the evolutionary trade-off
Horne, S., Chowdhury, S. K., & Heng, H. H. Q. (2014) · Frontiers in Genetics · doi:10.3389/fgene.2014.00092 · Cited by 84 · see citing works
High-Throughput Identification of Adaptive Mutations in Experimentally Evolved Yeast Populations
Payen, C., Sunshine, A. B., Ong, G. T., Pogachar, J. L., Zhao, W. D., & Dunham, M. J. (2016) · PLoS Genetics · doi:10.1371/journal.pgen.1006339 · Cited by 83 · see citing works
Cell size control – a mechanism for maintaining fitness and function
Miettinen, T. P., Caldez, M. J., Kaldis, P., & Björklund, M. (2017) · BioEssays · doi:10.1002/bies.201700058 · Cited by 89 · see citing works
Wang, H., Gong, P., Chen, T., Gao, S., Wu, Z., Wang, X., Li, J., Marjani, S. L., Costa, J. C., Weissman, S. M., et al. (2021) · Advanced Science · doi:10.1002/advs.202004320 · Cited by 89 · see citing works
Gene duplication and the evolution of moonlighting proteins
Espinosa‐Cantú, A., Ascencio, D., Barona‐Gómez, F., & DeLuna, A. (2015) · Frontiers in Genetics · doi:10.3389/fgene.2015.00227 · Cited by 84 · see citing works
Ploidy plasticity: a rapid and reversible strategy for adaptation to stress
Berman, J. G. (2016) · FEMS Yeast Research · doi:10.1093/femsyr/fow020 · Cited by 80 · see citing works
A Relay Race on the Evolutionary Adaptation Spectrum
Yona, A. H., Frumkin, I., & Pilpel, Y. (2015) · Cell · doi:10.1016/j.cell.2015.10.005 · Cited by 79 · see citing works
Hypoxia drives transient site-specific copy gain and drug-resistant gene expressionPreprint
Black, J. C., Atabakhsh, E., Kim, J., Biette, K. M., Rechem, C. V., Ladd, B., Burrowes, P. D., Donado, C. A., Mattoo, H., Kleinstiver, B. P., et al. (2015) · Genes & Development · doi:10.1101/gad.259796.115 · Cited by 83 · see citing works
Genes on B chromosomes: Old questions revisited with new tools
Banaei‐Moghaddam, A. M., Martis, M. M., Macas, J., Gundlach, H., Himmelbach, A., Altschmied, L., Mayer, K., & Houben, A. (2014) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2014.11.007 · Cited by 82 · see citing works
Liu, H., Shi, J., Sun, C., Gong, H., Fan, X., Qiu, F., Huang, X., Feng, Q., Zheng, X., Yuan, N., et al. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1601352113 · Cited by 82 · see citing works
Abedalthagafi, M., Merrill, P. H., Bi, W. L., Jones, R. T., Listewnik, M. L., Ramkissoon, S. H., Thorner, A. R., Dunn, I. F., Beroukhim, R., Alexander, B. M., et al. (2014) · Oncotarget · doi:10.18632/oncotarget.2517 · Cited by 79 · see citing works
Payen, C., Rienzi, S. C. D., Ong, G. T., Pogachar, J. L., Sanchez, J. C., Sunshine, A. B., Raghuraman, M. K., Brewer, B. J., & Dunham, M. J. (2013) · G3 Genes Genomes Genetics · doi:10.1534/g3.113.009365 · Cited by 75 · see citing works
Bhosale, P. G., Cristea, S., Ambatipudi, S., Desai, R. S., Kumar, R., Patil, A. J., Kane, S., Borges, A. M., Schäffer, A. A., Beerenwinkel, N., et al. (2017) · Translational Oncology · doi:10.1016/j.tranon.2017.03.008 · Cited by 78 · see citing works
Reconstructing the molecular life history of gliomas
Barthel, F. P., Wesseling, P., & Verhaak, R. G. W. (2018) · Acta Neuropathologica · doi:10.1007/s00401-018-1842-y · Cited by 78 · see citing works
Parasexuality and mosaic aneuploidy in Leishmania: alternative genetics
Sterkers, Y., Crobu, L., Lachaud, L., Pagès, M., & Bastien, P. (2014) · Trends in Parasitology · doi:10.1016/j.pt.2014.07.002 · Cited by 77 · see citing works
Bolognesi, B., & Lehner, B. (2018) · eLife · doi:10.7554/elife.39804 · Cited by 73 · see citing works
Sladky, V. C., Knapp, K., Soratroi, C., Heppke, J., Eichin, F., Rocamora-Reverte, L., Szabo, T., Bongiovanni, L., Westendorp, B., Moreno, E., et al. (2020) · Developmental Cell · doi:10.1016/j.devcel.2019.12.016 · Cited by 55 · see citing works
Mechanisms of X Chromosome Dosage Compensation
Ercan, S. (2014) · Journal of Genomics · doi:10.7150/jgen.10404 · Cited by 64 · see citing works
Mutation–selection balance and compensatory mechanisms in tumour evolution
Persi, E., Wolf, Y. I., Horn, D., Ruppin, E., Demichelis, F., Gatenby, R. A., Gillies, R. J., & Koonin, E. V. (2020) · Nature Reviews Genetics · doi:10.1038/s41576-020-00299-4 · Cited by 62 · see citing works
Ma, W., Gabriel, T. S., Martis, M. M., Gursinsky, T., Schubert, V., Vrána, J., Doležel, J., Grundlach, H., Altschmied, L., Scholz, U., et al. (2016) · New Phytologist · doi:10.1111/nph.14110 · Cited by 65 · see citing works
Patterns of Chromosomal Aberrations in Solid Tumors
Grade, M., Difilippantonio, M. J., & Camps, J. (2015) · Recent results in cancer research/Recent Results in Cancer Research · doi:10.1007/978-3-319-20291-4_6 · Cited by 64 · see citing works
Gene Dosage Imbalance Contributes to Chromosomal Instability-Induced Tumorigenesis
Clemente‐Ruiz, M., Murillo-Maldonado, J. M., Benhra, N., Barrio, L., Pérez, L., Quiroga-Artigas, G., Nebreda, Á. R., & Milán, M. (2016) · Developmental Cell · doi:10.1016/j.devcel.2016.01.008 · Cited by 62 · see citing works
A Practical Guide for Structural Variation Detection in the Human Genome
Yang, L. (2020) · Current Protocols in Human Genetics · doi:10.1002/cphg.103 · Cited by 63 · see citing works
Global Analysis of Gene Expression in Response to Whole-Chromosome Aneuploidy in Hexaploid Wheat
Zhang, A., Li, N., Gong, L., Gou, X., Wang, B., Deng, X., Li, C., Dong, Q., Zhang, H., & Liu, B. (2017) · PLANT PHYSIOLOGY · doi:10.1104/pp.17.00819 · Cited by 59 · see citing works
Rapid and extensive karyotype diversification in haploid clinical Candida auris isolates
Bravo Ruiz, G., Ross, Z. K., Holmes, E., Schelenz, S., Gow, N. A. R., & Lorenz, A. (2019) · Current Genetics · doi:10.1007/s00294-019-00976-w · Cited by 60 · see citing works
Zhang, X., Xu, Y., Liu, D., Geng, J., Chen, S., Jiang, Z., Fu, Q., & Sun, K. (2015) · BMC Genomics · doi:10.1186/s12864-015-1590-5 · Cited by 59 · see citing works
Myosin IIA suppresses glioblastoma development in a mechanically sensitive manner
Picariello, H. S., Kenchappa, R. S., Rai, V., Crish, J. F., Dovas, A., Pogoda, K., McMahon, M. M., Bell, E. S., Chandrasekharan, U. M., Luu, A., et al. (2019) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1902847116 · Cited by 58 · see citing works
Polar bear evolution is marked by rapid changes in gene copy number in response to dietary shift
Rinker, D. C., Specian, N. K., Zhao, S., & Gibbons, J. G. (2019) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1901093116 · Cited by 57 · see citing works
The population genetics of adaptation through copy number variation in a fungal plant pathogen
Stalder, L., Oggenfuss, U., Mohd‐Assaad, N., & Croll, D. (2022) · Molecular Ecology · doi:10.1111/mec.16435 · Cited by 54 · see citing works
Aneuploid embryonic stem cells exhibit impaired differentiation and increased neoplastic potential
Zhang, M., Cheng, L., Jia, Y., Liu, G., Li, C., Song, S., Bradley, A., & Huang, Y. (2016) · The EMBO Journal · doi:10.15252/embj.201593103 · Cited by 58 · see citing works
Industrial Relevance of Chromosomal Copy Number Variation in Saccharomyces Yeasts
de Vries, A. R. G., Pronk, J. T., & Daran, J.-M. G. (2017) · Applied and Environmental Microbiology · doi:10.1128/aem.03206-16 · Cited by 54 · see citing works
Relevance of chromosomal band 11q13 in oral carcinogenesis: An update of current knowledge
Ramos‐García, P., Ruiz‐Ávila, I., Montoya, J. A. G., Ayén, Á., González‐Ruiz, L., Navarro‐Triviño, F. J., & González‐Moles, M. Á. (2017) · Oral Oncology · doi:10.1016/j.oraloncology.2017.04.016 · Cited by 56 · see citing works
Chromosome evolution screens recapitulate tissue-specific tumor aneuploidy patterns
Watson, E. V., Lee, J. J.-K., Gulhan, D., Melloni, G. E. M., Venev, S. V., Magesh, R. Y., Frederick, A., Chiba, K., Wooten, E. C., Naxerova, K., et al. (2024) · Nature Genetics · doi:10.1038/s41588-024-01665-2 · Cited by 51 · see citing works
Pan, Y.-L., Cao, F., Guo, A., Chang, W., Chen, X., Ma, W., Gao, X., Guo, S., Fu, C., & Zhu, J. (2015) · British Journal of Cancer · doi:10.1038/bjc.2015.260 · Cited by 54 · see citing works
Margres, M. J., Bigelow, A. T., Lemmon, E. M., Lemmon, A. R., & Rokyta, D. R. (2017) · Genetics · doi:10.1534/genetics.117.202655 · Cited by 54 · see citing works
A copy number variant at the HPDA‐D12 locus confers compact plant architecture in cotton
Ji, G., Liang, C., Cai, Y., Pan, Z., Meng, Z., Li, Y., Jia, Y., Miao, Y., Pei, X., Gong, W., et al. (2020) · New Phytologist · doi:10.1111/nph.17059 · Cited by 54 · see citing works
Duarte, G. T., Volkova, P., Pérez, F. F., & Horemans, N. (2023) · Plants · doi:10.3390/plants12051178 · Cited by 53 · see citing works
Cell Death Response to DNA Damage.
Wang, J. Y. J. (2019) · Europe PMC (PubMed Central) · Cited by 52 · see citing works
Developmental Dynamics of X-Chromosome Dosage Compensation by the DCC and H4K20me1 in C. elegans
Kramer, M., Kranz, A.-L., Su, A., Winterkorn, L. H., Albritton, S. E., & Ercan, S. (2015) · PLoS Genetics · doi:10.1371/journal.pgen.1005698 · Cited by 52 · see citing works
Singh, G., Kaur, N., Khanna, R., Kaur, R. P., Gudi, S., Kaur, R., Sidhu, N. S., Vikal, Y., & Mangat, G. S. (2022) · Critical Reviews in Biotechnology · doi:10.1080/07388551.2022.2112648 · Cited by 51 · see citing works
Yeast: a simple model system to study complex phenomena of aneuploidy
Mulla, W. A., Zhu, J., & Li, R. (2013) · FEMS Microbiology Reviews · doi:10.1111/1574-6976.12048 · Cited by 51 · see citing works
Different Facets of Copy Number Changes: Permanent, Transient, and Adaptive
Mishra, S., & Whetstine, J. R. (2016) · Molecular and Cellular Biology · doi:10.1128/mcb.00652-15 · Cited by 51 · see citing works
The unfolded protein response links tumor aneuploidy to local immune dysregulation
Su, X., Dosset, M., Almanza, G., Searles, S. C., Sahani, P., Waller, T. C., Jepsen, K., Carter, H. K., & Zanetti, M. (2021) · EMBO Reports · doi:10.15252/embr.202152509 · Cited by 51 · see citing works
Cimino, P. J., Kim, Y., Wu, H., Alexander, J., Wirsching, H., Szulzewsky, F., Pitter, K. L., Ozawa, T., Wang, J., Vazquez, J., et al. (2018) · Genes & Development · doi:10.1101/gad.312157.118 · Cited by 50 · see citing works
The evolving paradigm of cell-nonautonomous UPR-based regulation of immunity by cancer cells
Zanetti, M., Rodvold, J. J., & Mahadevan, N. R. (2015) · Oncogene · doi:10.1038/onc.2015.108 · Cited by 48 · see citing works
Cuproptosis predicts the risk and clinical outcomes of lung adenocarcinoma
Hu, Q., Wang, R., Ma, H., Zhang, Z., & Xue, Q. (2022) · Frontiers in Oncology · doi:10.3389/fonc.2022.922332 · Cited by 46 · see citing works
Loss of the SUMO protease Ulp2 triggers a specific multichromosome aneuploidyPreprint
Ryu, H., Wilson, N. R., Mehta, S. S., Hwang, S. S., & Hochstrasser, M. (2016) · Genes & Development · doi:10.1101/gad.282194.116 · Cited by 45 · see citing works
Identification of a quality-control factor that monitors failures during proteasome assembly
Zavodszky, E., Peak-Chew, S.-Y., Juszkiewicz, S., Narvaez, A. J., & Hegde, R. S. (2021) · Science · doi:10.1126/science.abc6500 · Cited by 45 · see citing works
Brouwers, N., de Vries, A. R. G., van den Broek, M. A., Weening, S. M., Schuurman, T. D. E., Kuijpers, N. G. A., Pronk, J. T., & Daran, J.-M. G. (2019) · PLoS Genetics · doi:10.1371/journal.pgen.1007853 · Cited by 44 · see citing works
Wang, X., Yang, S.-A., Gong, S., Chang, C.-H., Portilla, J.-M., Chatterjee, D., Irianto, J., Bao, H., Huang, Y., & Deng, W. (2021) · Developmental Cell · doi:10.1016/j.devcel.2021.05.017 · Cited by 40 · see citing works
Contemporary, yeast-based approaches to understanding human genetic variation
Dunham, M. J., & Fowler, D. M. (2013) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2013.10.001 · Cited by 37 · see citing works
Herbicide resistance evolution, fitness cost, and the fear of the superweeds
Damalas, C. A., & Koutroubas, S. D. (2023) · Plant Science · doi:10.1016/j.plantsci.2023.111934 · Cited by 38 · see citing works
Steenwyk, J. L., Soghigian, J., Perfect, J. R., & Gibbons, J. G. (2016) · BMC Genomics · doi:10.1186/s12864-016-3044-0 · Cited by 38 · see citing works
Meur, Q. D., Deutschbauer, A. M., Koch, M., Wattiez, R., & Leroy, B. (2017) · Applied and Environmental Microbiology · doi:10.1128/aem.02038-17 · Cited by 38 · see citing works
Koh, Y. W., Lee, S. J., Han, J., Haam, S., Jung, J., & Lee, H. W. (2019) · Lung Cancer · doi:10.1016/j.lungcan.2019.01.004 · Cited by 38 · see citing works
Genetic Determinants of IgA Nephropathy: Eastern Perspective
Li, M., & Yu, X. (2018) · Seminars in Nephrology · doi:10.1016/j.semnephrol.2018.05.015 · Cited by 38 · see citing works
Multi-Layered Cancer Chromosomal Instability Phenotype
Roschke, A. V., & Rozenblum, E. (2013) · Frontiers in Oncology · doi:10.3389/fonc.2013.00302 · Cited by 37 · see citing works
NDRG1 links p53 with proliferation-mediated centrosome homeostasis and genome stability
Croessmann, S., Wong, H. Y., Zabransky, D. J., Chu, D. T. W., Mendonca, J., Sharma, A. R., Mohseni, M., Rosen, D. M., Scharpf, R. B., Cidado, J. R., et al. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1503683112 · Cited by 36 · see citing works
Effects of selective inhibitors of Aurora kinases on anaplastic thyroid carcinoma cell lines
Baldini, E., Tuccilli, C., Prinzi, N., Sorrenti, S., Antonelli, A., Gnessi, L., Morrone, S., Moretti, C., Bononi, M., Arlot‐Bonnemains, Y., et al. (2014) · Endocrine Related Cancer · doi:10.1530/erc-14-0299 · Cited by 36 · see citing works
Low α-defensin gene copy number increases the risk for IgA nephropathy and renal dysfunction
Ai, Z., Li, M., Liu, W., Foo, J. N., Mansouri, O. A., Yin, P., Zhou, Q., Tang, X., Dong, X., Feng, S., et al. (2016) · Science Translational Medicine · doi:10.1126/scitranslmed.aaf2106 · Cited by 36 · see citing works
Mitotic Dysfunction Associated with Aging Hallmarks.
Macedo, J. C., Vaz, S., & Logarinho, E. (2017) · Advances in Experimental Medicine and Biology · doi:10.1007/978-3-319-57127-0_7 · Cited by 33 · see citing works
Sim, T. Y., Harith, H. H., Tham, C. L., Hashim, N. F. M., Shaari, K., Sulaiman, M. R., & Israf, D. A. (2018) · Molecules · doi:10.3390/molecules23061355 · Cited by 36 · see citing works
DNA Copy Number Variations as Markers of Mutagenic Impact
Hovhannisyan, G. G., Harutyunyan, T. A., Aroutiounian, R. M., & Liehr, T. (2019) · International Journal of Molecular Sciences · doi:10.3390/ijms20194723 · Cited by 36 · see citing works
- Authors
- Tang, Y.-C., & Amon, A.
- Affiliations
- Howard Hughes Medical Institute (US)
- Corresponding author
- Amon, Angelika
- Venue
- Cell
- Publisher
- Elsevier BV
- Published
- 2013-01
- Volume
- 152
- Issue
- 3
- Pages
- 394-405
- ISSN
- 0092-8674 (ISSN-L)
- PMC
- PMC3641674
- OpenAlex
- W2011172223
- Cited by
- 348
- References
- 119
- Citations by year
- 2026: 14 · 2025: 15 · 2024: 22 · 2023: 36 · 2022: 17 · 2021: 27 · 2020: 34 · 2019: 25 · 2018: 35 · 2017: 25 · 2016: 24 · 2015: 33 · 2014: 25 · 2013: 15
- FWCI
- 3.97
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Cell (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- DSpace@MIT (Massachusetts Institute of Technology) (submittedVersion, cc-by-nc-nd)
- PMC
- Funders
- Howard Hughes Medical Institute
- National Institutes of Health
- National Institute of General Medical Sciences (R01GM056800, GM 56800, R29GM056800)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomic variations and chromosomal abnormalities
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genome Rearrangement Algorithms
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Chromosomal and Genetic Variations
- Keywords
- copy number alterations, gene amplification, gene deletion, chromosomal instability, adaptive evolution, microorganisms, developmental abnormalities, therapeutic target
- MeSH terms
- Aneuploidy, Animals, Humans, Neoplasms, Plants, Polyploidy, Yeasts, Gene Expression, Gene Dosage, Genetic Fitness, DNA Copy Number Variations
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review