Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome

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Functional interactions between the gut microbiota and host metabolism

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A framework for human microbiome research

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Commensal Host-Bacterial Relationships in the Gut

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Reduced diversity of faecal microbiota in Crohn’s disease revealed by a metagenomic approach

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The NIH Human Microbiome ProjectPreprint

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Artificial sweeteners induce glucose intolerance by altering the gut microbiota

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The Intestinal Microbiota Modulates the Anticancer Immune Effects of Cyclophosphamide

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Phages and the Evolution of Bacterial Pathogens: from Genomic Rearrangements to Lysogenic Conversion

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The microglial sensome revealed by direct RNA sequencing

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Genomic analysis of uncultured marine viral communities

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Host lifestyle affects human microbiota on daily timescales

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A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes

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Viruses manipulate the marine environment

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A historical overview of bacteriophage therapy as an alternative to antibiotics for the treatment of bacterial pathogens

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Profound alterations of intestinal microbiota following a single dose of clindamycin results in sustained susceptibility to Clostridium difficile-induced colitis

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Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

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The GEM mapper: fast, accurate and versatile alignment by filtration

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A simple, fast, and accurate method of phylogenomic inference

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Chapter 12: Human Microbiome Analysis

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Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonizationPreprint

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Molecular analysis of the gut microbiota of identical twins with Crohn's disease

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De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification

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Biodegradation of Polyester Polyurethane by Endophytic Fungi

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